Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0007823

Physical Location & Seq

Genomic Coordinates Reverse (-)

64714324 .. 64714749

Gene Structure 426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG378400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTTGGTTTCTACACTGGACATGCTCACTCAGGCTGCTTCGAATTCTCTCTACGTTTTCTGCTTCTGCAATTTGATCATAGTCATGATCGTCGTGGGCTCCAAACCCGGGTCTTACTCTGATCAAGAAAGTGAACTTCCTCGCTCAAAGGTGACCTACACTATTACAAGTGATAAACAAGTTGATCATGATGCTAATTGTGAGCAGATGGGTATCACCAGTTCATCAGTTGTTATCAGTAGTGAAGCAAATGCCAAGAAAGAACTAGCAAGCCATGAAAAAGCCGGCATTGATGAGCAGATTGTTGTCAGTAATGAGTGTGACAATGACGATGAGCTGAGAAGAAGAGCCGAAGAATTTATCGAAAAAGTTAACAGGGGATGGAGGGCAGAATTGCTGAGAAACTCACCTTTGATCAAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.67

Weight (kDa)

4.83

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07165
fragaria_vesca	FvH4_7g28161 FvH4_7g28170
prunus_persica	Prupe.2G282100_v2.0.a1 Prupe.2G282200_v2.0.a1
pyrus_communis	pycom01g19730 pycom07g23080
rosa_chinensis	RchiOBHm_Chr1g0375111 RchiOBHm_Chr1g0375121
rosa_laevigata	RLG00000026685 RLG00000026686
rosa_multiflora	Rmu_sc0000554.1_g000019 Rmu_sc0000554.1_g000020
rosa_roxburghii	Rroxscaffold_4G00283000
rosa_rugosa	Rorug01G0388600
rosa_samantha	Rh1AG399000 Rh1AG399100 Rh1BG365400 Rh1BG365500 Rh1CG378300 Rh1CG378400 Rh1DG396100 Rh1DG396200
rosa_wichuraiana	Rw1G035430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	43, 356
AfiI	CCNNNNNNNGG	1 cut(s)	108
AluBI	AGCT	1 cut(s)	337
AluI	AGCT	1 cut(s)	337
Ama87I	CYCGRG	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	2 cut(s)	43, 356
AsuC2I	CCSGG	2 cut(s)	108, 109
AsuHPI	GGTGA	3 cut(s)	163, 208, 399
AsuII	TTCGAA	1 cut(s)	41
AvaI	CYCGRG	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	2 cut(s)	202, 375
BclI	TGATCA	4 cut(s)	75, 121, 184, 414
BcnI	CCSGG	2 cut(s)	108, 109
BfaI	CTAG	1 cut(s)	266
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
Bme1390I	CCNGG	2 cut(s)	108, 109
BmeT110I	CYCGRG	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	100
BmrFI	CCNGG	2 cut(s)	108, 109
BmsI	GCATC	1 cut(s)	181
Bpu14I	TTCGAA	1 cut(s)	41
BpuMI	CCSGG	2 cut(s)	108, 109
BsaBI	GATNNNNATC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	2 cut(s)	21, 219
Bse8I	GATNNNNATC	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	107
BseGI	GGATG	1 cut(s)	386
BseJI	GATNNNNATC	1 cut(s)	212
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMII	CTCAG	3 cut(s)	44, 329, 389
BseNI	ACTGG	2 cut(s)	21, 219
BseXI	GCAGC	1 cut(s)	22
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	2 cut(s)	108, 285
BslI	CCNNNNNNNGG	1 cut(s)	108
BsoBI	CYCGRG	1 cut(s)	107
Bsp119I	TTCGAA	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp143I	GATC	5 cut(s)	75, 87, 121, 184, 414
BspCNI	CTCAG	3 cut(s)	43, 330, 390
BspHI	TCATGA	2 cut(s)	84, 187
BspLI	GGNNCC	1 cut(s)	100
BspQI	GCTCTTC	1 cut(s)	340
BspT104I	TTCGAA	1 cut(s)	41
BsrFI	RCCGGY	1 cut(s)	284
BsrI	ACTGG	2 cut(s)	21, 219
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	5 cut(s)	75, 87, 121, 184, 414
Bst6I	CTCTTC	1 cut(s)	340
BstBI	TTCGAA	1 cut(s)	41
BstC8I	GCNNGC	2 cut(s)	271, 286
BstDEI	CTNAG	3 cut(s)	30, 338, 398
BstEII	GGTNACC	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	386
BstKTI	GATC	5 cut(s)	78, 90, 124, 187, 417
BstMBI	GATC	5 cut(s)	75, 87, 121, 184, 414
BstNSI	RCATGY	1 cut(s)	25
BstPI	GGTNACC	1 cut(s)	151
BstSCI	CCNGG	2 cut(s)	106, 107
BstV1I	GCAGC	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	386
BtsIMutI	CAGTG	1 cut(s)	14
Cac8I	GCNNGC	2 cut(s)	271, 286
CciI	TCATGA	2 cut(s)	84, 187
Cfr10I	RCCGGY	1 cut(s)	284
Cfr9I	CCCGGG	1 cut(s)	107
CviAII	CATG	4 cut(s)	22, 85, 188, 275
CviJI	RGCY	6 cut(s)	35, 99, 273, 284, 337, 350
CviKI_1	RGCY	6 cut(s)	35, 99, 273, 284, 337, 350
DdeI	CTNAG	3 cut(s)	30, 338, 398
DpnI	GATC	5 cut(s)	77, 89, 123, 186, 416
DpnII	GATC	5 cut(s)	75, 87, 121, 184, 414
Eam1104I	CTCTTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	340
Eco24I	GRGCYC	1 cut(s)	101
Eco88I	CYCGRG	1 cut(s)	107
Eco91I	GGTNACC	1 cut(s)	151
EcoO65I	GGTNACC	1 cut(s)	151
EcoRI	GAATTC	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	101
FaeI	CATG	4 cut(s)	25, 88, 191, 278
FaiI	YATR	6 cut(s)	23, 80, 86, 189, 276, 424
FatI	CATG	4 cut(s)	21, 84, 187, 274
FbaI	TGATCA	4 cut(s)	75, 121, 184, 414
Fnu4HI	GCNGC	1 cut(s)	36
FokI	GGATG	1 cut(s)	393
FriOI	GRGCYC	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	36
FspBI	CTAG	1 cut(s)	266
GluI	GCNGC	1 cut(s)	36
HapII	CCGG	2 cut(s)	108, 285
Hin1II	CATG	4 cut(s)	25, 88, 191, 278
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HpaI	GTTAAC	1 cut(s)	373
HpaII	CCGG	2 cut(s)	108, 285
HphI	GGTGA	3 cut(s)	163, 208, 399
Hpy166II	GTNNAC	2 cut(s)	134, 373
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	3 cut(s)	85, 125, 188
Hpy8I	GTNNAC	2 cut(s)	134, 373
Hpy99I	CGWCG	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	1 cut(s)	69
HpyF3I	CTNAG	3 cut(s)	30, 338, 398
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	4 cut(s)	25, 88, 191, 278
KroI	GCCGGC	1 cut(s)	284
KroNI	GCCGGC	1 cut(s)	286
Ksp22I	TGATCA	4 cut(s)	75, 121, 184, 414
KspAI	GTTAAC	1 cut(s)	373
Kzo9I	GATC	5 cut(s)	75, 87, 121, 184, 414
LguI	GCTCTTC	1 cut(s)	340
LmnI	GCTCC	1 cut(s)	104
LpnPI	CCDG	6 cut(s)	2, 17, 121, 232, 298, 361
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	2 cut(s)	151, 320
MalI	GATC	5 cut(s)	77, 89, 123, 186, 416
MboI	GATC	5 cut(s)	75, 87, 121, 184, 414
MboII	GAAGA	3 cut(s)	354, 357, 365
MhlI	GDGCHC	1 cut(s)	101
MluCI	AATT	5 cut(s)	43, 70, 196, 356, 392
MnlI	CCTC	2 cut(s)	150, 378
MroNI	GCCGGC	1 cut(s)	284
MseI	TTAA	1 cut(s)	372
MslI	CAYNNNNRTG	1 cut(s)	83
MspI	CCGG	2 cut(s)	108, 285
MspR9I	CCNGG	2 cut(s)	108, 109
NaeI	GCCGGC	1 cut(s)	286
NciI	CCSGG	2 cut(s)	108, 109
NdeII	GATC	5 cut(s)	75, 87, 121, 184, 414
NgoMIV	GCCGGC	1 cut(s)	284
NlaIII	CATG	4 cut(s)	25, 88, 191, 278
NlaIV	GGNNCC	1 cut(s)	100
NmuCI	GTSAC	2 cut(s)	151, 320
NspI	RCATGY	1 cut(s)	25
NspV	TTCGAA	1 cut(s)	41
PagI	TCATGA	2 cut(s)	84, 187
PciSI	GCTCTTC	1 cut(s)	340
PdiI	GCCGGC	1 cut(s)	286
PkrI	GCNGC	1 cut(s)	37
PspEI	GGTNACC	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	100
PsrI	GAACNNNNNNTAC	2 cut(s)	205, 237
RseI	CAYNNNNRTG	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	340
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	5 cut(s)	75, 87, 121, 184, 414
ScrFI	CCNGG	2 cut(s)	108, 109
SduI	GDGCHC	1 cut(s)	101
SetI	ASST	5 cut(s)	57, 153, 158, 339, 412
SfaNI	GCATC	1 cut(s)	181
SfuI	TTCGAA	1 cut(s)	41
SmaI	CCCGGG	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	83
Sse9I	AATT	5 cut(s)	43, 70, 196, 356, 392
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	2 cut(s)	106, 107
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	2 cut(s)	41, 363
TasI	AATT	5 cut(s)	43, 70, 196, 356, 392
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	1 cut(s)	21
TseFI	GTSAC	2 cut(s)	151, 320
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	2 cut(s)	151, 320
TspDTI	ATGAA	2 cut(s)	213, 291
TspMI	CCCGGG	1 cut(s)	107
TspRI	CASTG	1 cut(s)	21
XapI	RAATTY	2 cut(s)	43, 356
XceI	RCATGY	1 cut(s)	25
XmaI	CCCGGG	1 cut(s)	107
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.