Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007823

Physical Location & Seq

Genomic Coordinates Forward (+)

18310148 .. 18310926

Gene Structure 779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g19730.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAGAAAACTAAGGAAGTTCCATGTGAGGTTGTTGGAAGTTATCCAGTCCAATCCAATCTTACGAGTTGTTTGTTCAACCATGTTGGATTCTACATTGGACTTGCTCACTCAGGCCGCTTCCAACTCTCTTTACGTTTTCTGCTTCTGCAACTTGATCATAGTCATGATCCTCGTGGGATCGAAACCCGGCTCTTACTTTGATCAAGAAAGTGAAATTCCCGTCTCGGTTGTCACCAGCAGCTACAAAAACAGAAACACAAGTGATCATAAGCAAGTTGAAGATGGTATATGTGAGCAGGAGGAAGGTTCCATGATCAAATCACCAATTGTTTTCGGCCAAGTGGCGAATCCCGAGGTAGAACTTGCCGCTGCCGGAGATGACAAGGGCAGCAGTGATGATCACAATGAAAGCAAGGAGTGTGACAGCGAAGATGAGCTGAGGAGAAGAGCGGAGGAGTTCATTGAAAAAGTTAACAGAGGATGGAGGGCAGAGTTGTTGATAACCTCCCATTTAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

19.45

Weight (kDa)

4.95

Isoelectric Point (pI)

52.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07165
fragaria_vesca	FvH4_7g28161 FvH4_7g28170
prunus_persica	Prupe.2G282100_v2.0.a1 Prupe.2G282200_v2.0.a1
pyrus_communis	pycom01g19730 pycom07g23080
rosa_chinensis	RchiOBHm_Chr1g0375111 RchiOBHm_Chr1g0375121
rosa_laevigata	RLG00000026685 RLG00000026686
rosa_multiflora	Rmu_sc0000554.1_g000019 Rmu_sc0000554.1_g000020
rosa_roxburghii	Rroxscaffold_4G00283000
rosa_rugosa	Rorug01G0388600
rosa_samantha	Rh1AG399000 Rh1AG399100 Rh1BG365400 Rh1BG365500 Rh1CG378300 Rh1CG378400 Rh1DG396100 Rh1DG396200
rosa_wichuraiana	Rw1G035430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	452
AciI	CCGC	3 cut(s)	117, 369, 452
AclWI	GGATC	2 cut(s)	163, 187
AcoI	YGGCCR	1 cut(s)	337
AcsI	RAATTY	1 cut(s)	216
AgsI	TTSAA	3 cut(s)	78, 281, 467
AluBI	AGCT	2 cut(s)	243, 439
AluI	AGCT	2 cut(s)	243, 439
Alw26I	GTCTC	1 cut(s)	229
AlwI	GGATC	2 cut(s)	163, 187
Ama87I	CYCGRG	1 cut(s)	353
AoxI	GGCC	2 cut(s)	114, 337
ApeKI	GCWGC	3 cut(s)	240, 371, 390
ApoI	RAATTY	1 cut(s)	216
AsuC2I	CCSGG	1 cut(s)	189
AsuHPI	GGTGA	2 cut(s)	226, 315
AvaI	CYCGRG	1 cut(s)	353
BauI	CACGAG	1 cut(s)	173
BbvCI	CCTCAGC	1 cut(s)	440
BbvI	GCAGC	3 cut(s)	252, 358, 402
BccI	CCATC	2 cut(s)	278, 477
BclI	TGATCA	5 cut(s)	156, 202, 265, 315, 400
BcnI	CCSGG	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	229
BfaI	CTAG	1 cut(s)	520
BisI	GCNGC	5 cut(s)	117, 241, 369, 372, 391
BlsI	GCNGC	5 cut(s)	118, 242, 370, 373, 392
Bme1390I	CCNGG	1 cut(s)	189
BmeT110I	CYCGRG	1 cut(s)	353
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	1 cut(s)	189
Bpu10I	CCTNAGC	1 cut(s)	440
BpuMI	CCSGG	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	354
Bse1I	ACTGG	1 cut(s)	46
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	1 cut(s)	488
BseMII	CTCAG	2 cut(s)	125, 431
BseNI	ACTGG	1 cut(s)	46
BseRI	GAGGAG	2 cut(s)	457, 470
BseXI	GCAGC	3 cut(s)	252, 358, 402
BshFI	GGCC	2 cut(s)	116, 339
BsiHKCI	CYCGRG	1 cut(s)	353
BsiSI	CCGG	2 cut(s)	189, 375
BsmAI	GTCTC	1 cut(s)	229
BsmBI	CGTCTC	1 cut(s)	229
BsnI	GGCC	2 cut(s)	116, 339
BsoBI	CYCGRG	1 cut(s)	353
Bsp143I	GATC	7 cut(s)	156, 168, 179, 202, 265, 315, 400
BspACI	CCGC	3 cut(s)	117, 369, 452
BspANI	GGCC	2 cut(s)	116, 339
BspCNI	CTCAG	2 cut(s)	124, 432
BspHI	TCATGA	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	310
BspPI	GGATC	2 cut(s)	163, 187
BspQI	GCTCTTC	1 cut(s)	442
BsrBI	CCGCTC	1 cut(s)	452
BsrI	ACTGG	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	7 cut(s)	156, 168, 179, 202, 265, 315, 400
BssSI	CACGAG	1 cut(s)	173
Bst2BI	CACGAG	1 cut(s)	173
Bst6I	CTCTTC	1 cut(s)	442
BstDEI	CTNAG	3 cut(s)	11, 111, 440
BstF5I	GGATG	1 cut(s)	488
BstKTI	GATC	7 cut(s)	159, 171, 182, 205, 268, 318, 403
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	7 cut(s)	156, 168, 179, 202, 265, 315, 400
BstSCI	CCNGG	1 cut(s)	187
BstV1I	GCAGC	3 cut(s)	252, 358, 402
BsuRI	GGCC	2 cut(s)	116, 339
BtsCI	GGATG	1 cut(s)	488
BtsI	GCAGTG	1 cut(s)	400
BtsIMutI	CAGTG	1 cut(s)	400
CciI	TCATGA	1 cut(s)	165
CviAII	CATG	4 cut(s)	23, 82, 166, 313
CviJI	RGCY	5 cut(s)	116, 192, 243, 339, 439
CviKI_1	RGCY	5 cut(s)	116, 192, 243, 339, 439
DdeI	CTNAG	3 cut(s)	11, 111, 440
DpnI	GATC	7 cut(s)	158, 170, 181, 204, 267, 317, 402
DpnII	GATC	7 cut(s)	156, 168, 179, 202, 265, 315, 400
EaeI	YGGCCR	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	442
EarI	CTCTTC	1 cut(s)	442
Eco88I	CYCGRG	1 cut(s)	353
Esp3I	CGTCTC	1 cut(s)	229
FaeI	CATG	4 cut(s)	26, 85, 169, 316
FaiI	YATR	8 cut(s)	24, 83, 161, 167, 270, 290, 292, 314
FatI	CATG	4 cut(s)	22, 81, 165, 312
FbaI	TGATCA	5 cut(s)	156, 202, 265, 315, 400
Fnu4HI	GCNGC	5 cut(s)	117, 241, 369, 372, 391
FokI	GGATG	1 cut(s)	495
Fsp4HI	GCNGC	5 cut(s)	117, 241, 369, 372, 391
FspBI	CTAG	1 cut(s)	520
GluI	GCNGC	5 cut(s)	117, 241, 369, 372, 391
HaeIII	GGCC	2 cut(s)	116, 339
HapII	CCGG	2 cut(s)	189, 375
Hin1II	CATG	4 cut(s)	26, 85, 169, 316
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	2 cut(s)	89, 349
HpaI	GTTAAC	1 cut(s)	475
HpaII	CCGG	2 cut(s)	189, 375
HphI	GGTGA	2 cut(s)	226, 315
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188III	TCNNGA	3 cut(s)	166, 206, 353
Hpy8I	GTNNAC	1 cut(s)	475
HpyAV	CCTTC	1 cut(s)	299
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	1 cut(s)	150
HpyF3I	CTNAG	3 cut(s)	11, 111, 440
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	4 cut(s)	26, 85, 169, 316
Ksp22I	TGATCA	5 cut(s)	156, 202, 265, 315, 400
KspAI	GTTAAC	1 cut(s)	475
Kzo9I	GATC	7 cut(s)	156, 168, 179, 202, 265, 315, 400
LguI	GCTCTTC	1 cut(s)	442
LpnPI	CCDG	6 cut(s)	59, 98, 202, 250, 284, 388
Lsp1109I	GCAGC	3 cut(s)	252, 358, 402
MaeI	CTAG	1 cut(s)	520
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	2 cut(s)	232, 422
MalI	GATC	7 cut(s)	158, 170, 181, 204, 267, 317, 402
MbiI	CCGCTC	1 cut(s)	452
MboI	GATC	7 cut(s)	156, 168, 179, 202, 265, 315, 400
MboII	GAAGA	3 cut(s)	293, 443, 459
MfeI	CAATTG	1 cut(s)	327
MluCI	AATT	2 cut(s)	216, 327
MmeI	TCCRAC	3 cut(s)	15, 66, 147
MnlI	CCTC	9 cut(s)	21, 182, 295, 349, 435, 448, 473, 480, 517
MseI	TTAA	2 cut(s)	474, 515
MslI	CAYNNNNRTG	1 cut(s)	164
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	2 cut(s)	189, 375
MspR9I	CCNGG	1 cut(s)	189
MunI	CAATTG	1 cut(s)	327
NciI	CCSGG	1 cut(s)	189
NdeII	GATC	7 cut(s)	156, 168, 179, 202, 265, 315, 400
NlaIII	CATG	4 cut(s)	26, 85, 169, 316
NlaIV	GGNNCC	1 cut(s)	310
NmuCI	GTSAC	2 cut(s)	232, 422
PagI	TCATGA	1 cut(s)	165
PciSI	GCTCTTC	1 cut(s)	442
PfeI	GAWTC	2 cut(s)	89, 349
PkrI	GCNGC	5 cut(s)	118, 242, 370, 373, 392
PspN4I	GGNNCC	1 cut(s)	310
RseI	CAYNNNNRTG	1 cut(s)	164
SapI	GCTCTTC	1 cut(s)	442
SaqAI	TTAA	2 cut(s)	474, 515
SatI	GCNGC	5 cut(s)	117, 241, 369, 372, 391
Sau3AI	GATC	7 cut(s)	156, 168, 179, 202, 265, 315, 400
ScrFI	CCNGG	1 cut(s)	189
SetI	ASST	7 cut(s)	32, 138, 245, 310, 360, 441, 509
SmiMI	CAYNNNNRTG	1 cut(s)	164
Sse9I	AATT	2 cut(s)	216, 327
SsiI	CCGC	3 cut(s)	117, 369, 452
SspMI	CTAG	1 cut(s)	520
StyD4I	CCNGG	1 cut(s)	187
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	1 cut(s)	182
TasI	AATT	2 cut(s)	216, 327
TauI	GCSGC	2 cut(s)	119, 371
TfiI	GAWTC	2 cut(s)	89, 349
Tru1I	TTAA	2 cut(s)	474, 515
Tru9I	TTAA	2 cut(s)	474, 515
TscAI	CASTG	1 cut(s)	400
TseFI	GTSAC	2 cut(s)	232, 422
TseI	GCWGC	3 cut(s)	240, 371, 390
Tsp45I	GTSAC	2 cut(s)	232, 422
TspDTI	ATGAA	2 cut(s)	423, 451
TspRI	CASTG	1 cut(s)	400
XapI	RAATTY	1 cut(s)	216
XspI	CTAG	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.