Prupe.2G282100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0007823
Physical Location & Seq
Forward (+)
28055075 .. 28056038
964 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G282100.1

Sequence Viewer

Length: 450 bp
ATGTTGGCTTCTGCAGTGGACTTGCTCACTCAGGCTGCTTCCAATTCTCTGCTTGTTTTCTGCTTCTGCAATTTGATTATAGTCATGATCGTCATGGGGTCGAAACCGGGCTCTTACTTTGAGCAAGAAAGTGAAATTCCAGTCTCAATGAGCAGCAGCTACAAGTACAACAGAAACAACGCAAATTGTAAACAAGTTAATGATGCTAAATGTAAGCAGGAGGAGGGTACTTTGGTCAATCCATCTGATACTGTTTTCAGCCAAGTTTCATCAAATGCCAAGAAAGAACTTGCCACTGCCAGTGATGAAAAGGACAGCATCATCAGCCATCACAATGACAGCAAGAAGTGCGACAATGATGATGAGCTGAGAAGAAGAGCGGAAGAGTTTATTGAAAAAATGAACAAAGGATGGAGGGCAGAGTTGTTGAGAAATTCACATTTAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.71

Weight (kDa)

5.63

Isoelectric Point (pI)

53.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 380
AciI CCGC 1 cut(s) 380
AcsI RAATTY 2 cut(s) 135, 433
AfaI GTAC 2 cut(s) 167, 229
AgsI TTSAA 1 cut(s) 395
AluBI AGCT 2 cut(s) 159, 367
AluI AGCT 2 cut(s) 159, 367
Alw26I GTCTC 1 cut(s) 148
ApeKI GCWGC 3 cut(s) 35, 153, 156
ApoI RAATTY 2 cut(s) 135, 433
AsuC2I CCSGG 1 cut(s) 108
BaeI ACNNNNGTAYC 2 cut(s) 219, 252
BanII GRGCYC 1 cut(s) 113
BbvI GCAGC 3 cut(s) 22, 165, 168
BccI CCATC 3 cut(s) 250, 336, 405
BcnI CCSGG 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 148
BfmI CTRYAG 1 cut(s) 12
BisI GCNGC 3 cut(s) 36, 154, 157
BlsI GCNGC 3 cut(s) 37, 155, 158
Bme1390I CCNGG 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 2 cut(s) 193, 327
BpuMI CCSGG 1 cut(s) 108
Bse1I ACTGG 2 cut(s) 140, 300
BseGI GGATG 1 cut(s) 416
BseMII CTCAG 2 cut(s) 44, 359
BseNI ACTGG 2 cut(s) 140, 300
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 3 cut(s) 22, 165, 168
BsiSI CCGG 1 cut(s) 107
BsmAI GTCTC 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 113
Bsp143I GATC 1 cut(s) 87
BspACI CCGC 1 cut(s) 380
BspCNI CTCAG 2 cut(s) 43, 360
BspHI TCATGA 1 cut(s) 84
BspMAI CTGCAG 1 cut(s) 16
BspQI GCTCTTC 1 cut(s) 370
BsrBI CCGCTC 1 cut(s) 380
BsrI ACTGG 2 cut(s) 140, 300
BssMI GATC 1 cut(s) 87
Bst4CI ACNGT 1 cut(s) 253
Bst6I CTCTTC 2 cut(s) 370, 378
BstAPI GCANNNNNTGC 1 cut(s) 348
BstDEI CTNAG 2 cut(s) 30, 368
BstF5I GGATG 1 cut(s) 416
BstKTI GATC 1 cut(s) 90
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 1 cut(s) 87
BstMWI GCNNNNNNNGC 2 cut(s) 324, 348
BstSCI CCNGG 1 cut(s) 106
BstSFI CTRYAG 1 cut(s) 12
BstV1I GCAGC 3 cut(s) 22, 165, 168
BtsCI GGATG 1 cut(s) 416
BtsI GCAGTG 2 cut(s) 21, 294
BtsIMutI CAGTG 3 cut(s) 21, 294, 307
CciI TCATGA 1 cut(s) 84
Csp6I GTAC 2 cut(s) 166, 228
CviAII CATG 2 cut(s) 85, 94
CviJI RGCY 7 cut(s) 8, 35, 111, 159, 261, 327, 367
CviKI_1 RGCY 7 cut(s) 8, 35, 111, 159, 261, 327, 367
CviQI GTAC 2 cut(s) 166, 228
DdeI CTNAG 2 cut(s) 30, 368
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
Eam1104I CTCTTC 2 cut(s) 370, 378
EarI CTCTTC 2 cut(s) 370, 378
Eco24I GRGCYC 1 cut(s) 113
EcoT38I GRGCYC 1 cut(s) 113
FaeI CATG 2 cut(s) 88, 97
FaiI YATR 3 cut(s) 80, 86, 95
FatI CATG 2 cut(s) 84, 93
Fnu4HI GCNGC 3 cut(s) 36, 154, 157
FokI GGATG 1 cut(s) 423
FriOI GRGCYC 1 cut(s) 113
Fsp4HI GCNGC 3 cut(s) 36, 154, 157
GluI GCNGC 3 cut(s) 36, 154, 157
HapII CCGG 1 cut(s) 107
Hin1II CATG 2 cut(s) 88, 97
HpaII CCGG 1 cut(s) 107
Hpy166II GTNNAC 2 cut(s) 19, 191
Hpy188I TCNGA 1 cut(s) 247
Hpy188III TCNNGA 1 cut(s) 85
Hpy8I GTNNAC 2 cut(s) 19, 191
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4V TGCA 2 cut(s) 14, 69
HpyF10VI GCNNNNNNNGC 2 cut(s) 324, 348
HpyF3I CTNAG 2 cut(s) 30, 368
Hsp92II CATG 2 cut(s) 88, 97
Kzo9I GATC 1 cut(s) 87
LguI GCTCTTC 1 cut(s) 370
LpnPI CCDG 5 cut(s) 17, 120, 153, 203, 313
Lsp1109I GCAGC 3 cut(s) 22, 165, 168
LweI GCATC 2 cut(s) 193, 327
MalI GATC 1 cut(s) 89
MbiI CCGCTC 1 cut(s) 380
MboI GATC 1 cut(s) 87
MboII GAAGA 3 cut(s) 384, 387, 395
MhlI GDGCHC 1 cut(s) 113
MluCI AATT 5 cut(s) 43, 70, 135, 184, 433
MnlI CCTC 3 cut(s) 214, 217, 408
MseI TTAA 2 cut(s) 198, 443
MslI CAYNNNNRTG 1 cut(s) 333
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 108
MwoI GCNNNNNNNGC 2 cut(s) 324, 348
NciI CCSGG 1 cut(s) 108
NdeII GATC 1 cut(s) 87
NlaIII CATG 2 cut(s) 88, 97
PagI TCATGA 1 cut(s) 84
PciSI GCTCTTC 1 cut(s) 370
PkrI GCNGC 3 cut(s) 37, 155, 158
PstI CTGCAG 1 cut(s) 16
RsaI GTAC 2 cut(s) 167, 229
RsaNI GTAC 2 cut(s) 166, 228
RseI CAYNNNNRTG 1 cut(s) 333
SapI GCTCTTC 1 cut(s) 370
SaqAI TTAA 2 cut(s) 198, 443
SatI GCNGC 3 cut(s) 36, 154, 157
Sau3AI GATC 1 cut(s) 87
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 1 cut(s) 113
SetI ASST 2 cut(s) 161, 369
SfaNI GCATC 2 cut(s) 193, 327
SfcI CTRYAG 1 cut(s) 12
SmiMI CAYNNNNRTG 1 cut(s) 333
Sse9I AATT 5 cut(s) 43, 70, 135, 184, 433
SsiI CCGC 1 cut(s) 380
StyD4I CCNGG 1 cut(s) 106
TaaI ACNGT 1 cut(s) 253
TaqI TCGA 1 cut(s) 101
TasI AATT 5 cut(s) 43, 70, 135, 184, 433
TatI WGTACW 1 cut(s) 165
Tru1I TTAA 2 cut(s) 198, 443
Tru9I TTAA 2 cut(s) 198, 443
TscAI CASTG 3 cut(s) 21, 301, 307
TseI GCWGC 3 cut(s) 35, 153, 156
TspDTI ATGAA 3 cut(s) 258, 321, 416
TspRI CASTG 3 cut(s) 21, 301, 307
XapI RAATTY 2 cut(s) 135, 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.