Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009886

Physical Location & Seq

Genomic Coordinates Forward (+)

2271890 .. 2274288

Gene Structure 2399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G07240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGGTTTCTTTGGAAGACTGTTCGGAAGTAAGAAGCAAGAAAAGGCAACACCGAACAGACGAAGATGGAGCTTCGCTACTAGATCCTCACATCCCGAGAATGATTCGTCTTCTCATTCAAGCAAGAGACGTGGGGATGAAGATGTCTTAAACGGCGACAAGCATGCGATAGCCGTCGCGGCTGCTACAGCTGCAGTGGCTGAAGCCGCACTCGCTGCTGCTCGTGCGGCGGCGGAAGTCGTGAGACTCACCAATGGTGGTAGAAACTCGTCGGTAAAACAAATCAGTCGGAGTAATCGTCGGTGGTCTCAAGAGTATAAAGCAGCTATGAAGATTCAATCCGCTTTTCGTGGCTACTTGGCGAGGAGGGCGTTGAGAGCACTGAAGGCATTAGTGAAGCTTCAAGCGTTGGTGAAGGGACACATAGTAAGGAAACAAACGGCTGATATGCTGCGTCGAATGCAAACGCTGGTTCGGCTCCAAGCACGAGCTAGAGCTTCGCGTTCTTCTCACGTTTCTGACTCTTCCCATCCGCCAACACTAATGATTCCATCTTCCCCACAATCTTTCCATGCACGATGCGTTTCAGAGGCTGAGTACAGTAAAGTCATTGCCATGGATCACCACCACAACAACCACCGTTCACCGATGGGTTCAAGCCGGTTATTAGACCAATGGAGGACAGAGGAAAGTCTATGGAGCGCACCAAAGTACAATGAAGATGATGACAAAATCCTAGAAGTCGACACTTGGAAGCCTCACTTCAGAGAGTCACCAAGGAAAAGAGGATCTCTAGTGGTTCCTACAAGTGTGGAGAACAGTCCACAATTAAGGTCTAGAACAGGAAGCAGCAGTGGTGGTTCAAGGAGAAAAACTCCCTTCACGCCTGCGAGAAGCGAGTACGAGTACTACTCTGGGTATCACCCTAACTACATGGCTAACACTGAGTCTTACAAAGCAAAAGTCCGATCACAAAGCGCACCAAGACAGAGACTACAAGATTTACCTTCAGAGAGTGGTTACAAGAGGTCTATACAGGGACAGTATTACTACTACACGCCTGCTGCAGAGCGATCGTTTGATCAGCGTTCGGATAACGGGATCGCGGGTTACAGAGGAGTTTCTGATGGGTTAGATCGAAACCAAAGTGACAAATCGAAGATGTACACTTCGTTTTTCAGTTCTAATCCTCTTTTCTTTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

401

Amino Acids

45.26

Weight (kDa)

10.32

Isoelectric Point (pI)

72.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IQ	PF00612	107 - 126	2.7e-06	IQ calmodulin-binding motif
DUF4005	PF13178	274 - 387	1.3e-19	Protein of unknown function (DUF4005)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07240 AT5G07240 AT5G62070
fragaria_vesca	FvH4_7g29094
malus_domestica	MD01G1197700.v1.1 MD07G1265200.v1.1
prunus_persica	Prupe.2G291100_v2.0.a1
pyrus_communis	pycom01g20790 pycom07g24360
rosa_chinensis	RchiOBHm_Chr1g0376831
rosa_laevigata	RLG00000026566
rosa_multiflora	Rmu_co8362177.1_g000001 Rmu_sc0002113.1_g000005
rosa_roxburghii	Rroxscaffold_4G00281690
rosa_rugosa	Rorug01G0398800 Rorug01G0398900
rosa_samantha	Rh1AG416100 Rh1BG375500 Rh1CG389300 Rh1DG406100
rosa_wichuraiana	Rw1G036500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	744
AccII	CGCG	3 cut(s)	179, 502, 1106
AciI	CCGC	8 cut(s)	179, 207, 227, 230, 233, 342, 533, 1106
AclWI	GGATC	4 cut(s)	78, 627, 796, 1109
AcuI	CTGAAG	4 cut(s)	222, 404, 748, 993
AfaI	GTAC	5 cut(s)	599, 713, 902, 908, 1166
AgsI	TTSAA	6 cut(s)	120, 338, 404, 657, 864, 1202
AjiI	CACGTC	1 cut(s)	131
AluBI	AGCT	6 cut(s)	72, 191, 326, 400, 491, 497
AluI	AGCT	6 cut(s)	72, 191, 326, 400, 491, 497
Alw21I	GWGCWC	1 cut(s)	382
Alw26I	GTCTC	4 cut(s)	121, 238, 312, 985
AlwI	GGATC	4 cut(s)	78, 627, 796, 1109
AlwNI	CAGNNNCTG	2 cut(s)	200, 593
Ama87I	CYCGRG	1 cut(s)	95
ApeKI	GCWGC	8 cut(s)	182, 191, 215, 218, 323, 451, 849, 1064
ArsI	GACNNNNNNTTYG	2 cut(s)	948, 980
AspLEI	GCGC	2 cut(s)	704, 980
AsuHPI	GGTGA	6 cut(s)	241, 424, 614, 636, 765, 914
AvaI	CYCGRG	1 cut(s)	95
BauI	CACGAG	2 cut(s)	222, 486
BbsI	GAAGAC	2 cut(s)	22, 102
Bbv12I	GWGCWC	1 cut(s)	382
BbvI	GCAGC	8 cut(s)	169, 178, 202, 205, 335, 438, 861, 1051
BccI	CCATC	5 cut(s)	60, 537, 559, 643, 1121
BceAI	ACGGC	3 cut(s)	158, 169, 456
BcgI	CGANNNNNNTGC	4 cut(s)	146, 180, 1056, 1090
BclI	TGATCA	1 cut(s)	1081
BcoDI	GTCTC	4 cut(s)	121, 238, 312, 985
BfaI	CTAG	5 cut(s)	81, 492, 737, 794, 837
BfmI	CTRYAG	3 cut(s)	186, 192, 1065
BglI	GCCNNNNNGGC	1 cut(s)	179
BmcAI	AGTACT	1 cut(s)	908
BmeT110I	CYCGRG	1 cut(s)	95
BmgBI	CACGTC	1 cut(s)	131
BmiI	GGNNCC	2 cut(s)	479, 801
BmsI	GCATC	1 cut(s)	569
BpiI	GAAGAC	2 cut(s)	22, 102
BplI	GAGNNNNNCTC	4 cut(s)	859, 891, 896, 928
BpuEI	CTTGAG	1 cut(s)	294
BsaI	GGTCTC	1 cut(s)	312
BsaJI	CCNNGG	2 cut(s)	615, 776
BsaXI	ACNNNNNCTCC	2 cut(s)	283, 313
Bse118I	RCCGGY	1 cut(s)	660
Bse3DI	GCAATG	1 cut(s)	609
BseDI	CCNNGG	2 cut(s)	615, 776
BseGI	GGATG	3 cut(s)	91, 142, 529
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	2 cut(s)	585, 936
BseRI	GAGGAG	2 cut(s)	379, 1131
BseXI	GCAGC	8 cut(s)	169, 178, 202, 205, 335, 438, 861, 1051
Bsh1236I	CGCG	3 cut(s)	179, 502, 1106
Bsh1285I	CGRYCG	1 cut(s)	1076
BsiEI	CGRYCG	1 cut(s)	1076
BsiHKAI	GWGCWC	1 cut(s)	382
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	661
BslFI	GGGAC	2 cut(s)	432, 1053
BsmAI	GTCTC	4 cut(s)	121, 238, 312, 985
BsmBI	CGTCTC	1 cut(s)	121
BsmFI	GGGAC	2 cut(s)	432, 1053
BsmI	GAATGC	1 cut(s)	465
Bso31I	GGTCTC	1 cut(s)	312
BsoBI	CYCGRG	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp1407I	TGTACA	1 cut(s)	1164
Bsp143I	GATC	8 cut(s)	83, 619, 788, 968, 1073, 1081, 1101, 1135
Bsp19I	CCATGG	1 cut(s)	615
BspACI	CCGC	8 cut(s)	179, 207, 227, 230, 233, 342, 533, 1106
BspCNI	CTCAG	2 cut(s)	586, 937
BspFNI	CGCG	3 cut(s)	179, 502, 1106
BspLI	GGNNCC	2 cut(s)	479, 801
BspMAI	CTGCAG	2 cut(s)	196, 1069
BspPI	GGATC	4 cut(s)	78, 627, 796, 1109
BspTNI	GGTCTC	1 cut(s)	312
BsrDI	GCAATG	1 cut(s)	609
BsrFI	RCCGGY	1 cut(s)	660
BsrGI	TGTACA	1 cut(s)	1164
BssAI	RCCGGY	1 cut(s)	660
BssECI	CCNNGG	2 cut(s)	615, 776
BssMI	GATC	8 cut(s)	83, 619, 788, 968, 1073, 1081, 1101, 1135
BssSI	CACGAG	2 cut(s)	222, 486
BssT1I	CCWWGG	2 cut(s)	615, 776
Bst2BI	CACGAG	2 cut(s)	222, 486
Bst4CI	ACNGT	5 cut(s)	21, 602, 641, 821, 1044
Bst6I	CTCTTC	1 cut(s)	529
BstAPI	GCANNNNNTGC	1 cut(s)	215
BstAUI	TGTACA	1 cut(s)	1164
BstC8I	GCNNGC	3 cut(s)	165, 888, 1062
BstDEI	CTNAG	2 cut(s)	594, 945
BstDSI	CCRYGG	1 cut(s)	615
BstF5I	GGATG	3 cut(s)	91, 142, 529
BstFNI	CGCG	3 cut(s)	179, 502, 1106
BstHHI	GCGC	2 cut(s)	704, 980
BstKTI	GATC	8 cut(s)	86, 622, 791, 971, 1076, 1084, 1104, 1138
BstMAI	GTCTC	4 cut(s)	121, 238, 312, 985
BstMBI	GATC	8 cut(s)	83, 619, 788, 968, 1073, 1081, 1101, 1135
BstMCI	CGRYCG	1 cut(s)	1076
BstNSI	RCATGY	1 cut(s)	167
BstSFI	CTRYAG	3 cut(s)	186, 192, 1065
BstUI	CGCG	3 cut(s)	179, 502, 1106
BstV1I	GCAGC	8 cut(s)	169, 178, 202, 205, 335, 438, 861, 1051
BstV2I	GAAGAC	2 cut(s)	22, 102
BstX2I	RGATCY	2 cut(s)	83, 788
BstYI	RGATCY	2 cut(s)	83, 788
BtgI	CCRYGG	1 cut(s)	615
BtrI	CACGTC	1 cut(s)	131
BtsCI	GGATG	3 cut(s)	91, 142, 529
BtsI	GCAGTG	2 cut(s)	201, 859
BtsIMutI	CAGTG	4 cut(s)	201, 380, 859, 942
Cac8I	GCNNGC	3 cut(s)	165, 888, 1062
CaiI	CAGNNNCTG	2 cut(s)	200, 593
CfoI	GCGC	2 cut(s)	704, 980
Cfr10I	RCCGGY	1 cut(s)	660
CseI	GACGC	1 cut(s)	443
Csp6I	GTAC	5 cut(s)	598, 712, 901, 907, 1165
CspCI	CAANNNNNGTGG	2 cut(s)	112, 147
CviAII	CATG	4 cut(s)	164, 572, 616, 934
CviQI	GTAC	5 cut(s)	598, 712, 901, 907, 1165
DdeI	CTNAG	2 cut(s)	594, 945
DpnI	GATC	8 cut(s)	85, 621, 790, 970, 1075, 1083, 1103, 1137
DpnII	GATC	8 cut(s)	83, 619, 788, 968, 1073, 1081, 1101, 1135
Eam1104I	CTCTTC	1 cut(s)	529
EarI	CTCTTC	1 cut(s)	529
EciI	GGCGGA	2 cut(s)	248, 522
Eco130I	CCWWGG	2 cut(s)	615, 776
Eco31I	GGTCTC	1 cut(s)	312
Eco57I	CTGAAG	4 cut(s)	222, 404, 748, 993
Eco88I	CYCGRG	1 cut(s)	95
EcoT14I	CCWWGG	2 cut(s)	615, 776
ErhI	CCWWGG	2 cut(s)	615, 776
Esp3I	CGTCTC	1 cut(s)	121
FaeI	CATG	4 cut(s)	167, 575, 619, 937
FalI	AAGNNNNNCTT	2 cut(s)	746, 778
FaqI	GGGAC	2 cut(s)	432, 1053
FatI	CATG	4 cut(s)	163, 571, 615, 933
FauI	CCCGC	1 cut(s)	1099
FbaI	TGATCA	1 cut(s)	1081
FblI	GTMKAC	1 cut(s)	744
FokI	GGATG	3 cut(s)	78, 149, 516
FspBI	CTAG	5 cut(s)	81, 492, 737, 794, 837
GlaI	GCGC	2 cut(s)	703, 979
HapII	CCGG	1 cut(s)	661
HgaI	GACGC	1 cut(s)	443
HhaI	GCGC	2 cut(s)	704, 980
Hin1II	CATG	4 cut(s)	167, 575, 619, 937
Hin6I	GCGC	2 cut(s)	702, 978
HinP1I	GCGC	2 cut(s)	702, 978
HincII	GTYRAC	1 cut(s)	745
HindII	GTYRAC	1 cut(s)	745
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	7 cut(s)	104, 246, 334, 521, 547, 770, 947
HpaII	CCGG	1 cut(s)	661
HphI	GGTGA	6 cut(s)	241, 424, 614, 636, 765, 914
Hpy166II	GTNNAC	4 cut(s)	644, 745, 824, 1167
Hpy188I	TCNGA	9 cut(s)	26, 291, 520, 589, 767, 968, 1012, 1093, 1126
Hpy188III	TCNNGA	4 cut(s)	95, 241, 311, 837
Hpy8I	GTNNAC	4 cut(s)	644, 745, 824, 1167
Hpy99I	CGWCG	4 cut(s)	179, 274, 303, 459
HpyAV	CCTTC	4 cut(s)	379, 409, 889, 1017
HpyCH4III	ACNGT	5 cut(s)	21, 602, 641, 821, 1044
HpyCH4IV	ACGT	2 cut(s)	130, 513
HpyCH4V	TGCA	4 cut(s)	194, 463, 575, 1067
HpyF3I	CTNAG	2 cut(s)	594, 945
HpySE526I	ACGT	2 cut(s)	130, 513
Hsp92II	CATG	4 cut(s)	167, 575, 619, 937
HspAI	GCGC	2 cut(s)	702, 978
Ksp22I	TGATCA	1 cut(s)	1081
Kzo9I	GATC	8 cut(s)	83, 619, 788, 968, 1073, 1081, 1101, 1135
LmnI	GCTCC	3 cut(s)	69, 483, 699
LpnPI	CCDG	7 cut(s)	455, 674, 828, 900, 900, 1022, 1074
Lsp1109I	GCAGC	8 cut(s)	169, 178, 202, 205, 335, 438, 861, 1051
LweI	GCATC	1 cut(s)	569
MaeI	CTAG	5 cut(s)	81, 492, 737, 794, 837
MaeII	ACGT	2 cut(s)	130, 513
MaeIII	GTNAC	4 cut(s)	771, 1019, 1109, 1148
MalI	GATC	8 cut(s)	85, 621, 790, 970, 1075, 1083, 1103, 1137
MboI	GATC	8 cut(s)	83, 619, 788, 968, 1073, 1081, 1101, 1135
MflI	RGATCY	2 cut(s)	83, 788
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	1 cut(s)	827
MlyI	GAGTC	4 cut(s)	240, 515, 779, 956
MmeI	TCCRAC	1 cut(s)	269
MseI	TTAA	2 cut(s)	149, 830
MslI	CAYNNNNRTG	1 cut(s)	614
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	1 cut(s)	661
Mva1269I	GAATGC	1 cut(s)	465
MvnI	CGCG	3 cut(s)	179, 502, 1106
NcoI	CCATGG	1 cut(s)	615
NdeII	GATC	8 cut(s)	83, 619, 788, 968, 1073, 1081, 1101, 1135
NlaIII	CATG	4 cut(s)	167, 575, 619, 937
NlaIV	GGNNCC	2 cut(s)	479, 801
NmuCI	GTSAC	2 cut(s)	771, 1148
NspI	RCATGY	1 cut(s)	167
PaeI	GCATGC	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	1 cut(s)	295
PctI	GAATGC	1 cut(s)	465
PfeI	GAWTC	3 cut(s)	104, 334, 547
Ple19I	CGATCG	1 cut(s)	1076
PleI	GAGTC	4 cut(s)	240, 515, 778, 955
PpsI	GAGTC	4 cut(s)	240, 515, 778, 955
PspN4I	GGNNCC	2 cut(s)	479, 801
PstI	CTGCAG	2 cut(s)	196, 1069
PstNI	CAGNNNCTG	2 cut(s)	200, 593
PsuI	RGATCY	2 cut(s)	83, 788
PvuI	CGATCG	1 cut(s)	1076
PvuII	CAGCTG	1 cut(s)	191
RsaI	GTAC	5 cut(s)	599, 713, 902, 908, 1166
RsaNI	GTAC	5 cut(s)	598, 712, 901, 907, 1165
RseI	CAYNNNNRTG	1 cut(s)	614
SalI	GTCGAC	1 cut(s)	743
SaqAI	TTAA	2 cut(s)	149, 830
Sau3AI	GATC	8 cut(s)	83, 619, 788, 968, 1073, 1081, 1101, 1135
ScaI	AGTACT	1 cut(s)	908
SchI	GAGTC	4 cut(s)	240, 515, 779, 956
SduI	GDGCHC	1 cut(s)	382
SfaNI	GCATC	1 cut(s)	569
SfcI	CTRYAG	3 cut(s)	186, 192, 1065
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	1 cut(s)	309
SmoI	CTYRAG	1 cut(s)	309
SphI	GCATGC	1 cut(s)	167
Sse9I	AATT	1 cut(s)	827
SsiI	CCGC	8 cut(s)	179, 207, 227, 230, 233, 342, 533, 1106
SspMI	CTAG	5 cut(s)	81, 492, 737, 794, 837
StyI	CCWWGG	2 cut(s)	615, 776
TaaI	ACNGT	5 cut(s)	21, 602, 641, 821, 1044
TaiI	ACGT	2 cut(s)	133, 516
TaqI	TCGA	4 cut(s)	457, 744, 1138, 1157
TasI	AATT	1 cut(s)	827
TatI	WGTACW	4 cut(s)	597, 711, 906, 1164
TauI	GCSGC	4 cut(s)	182, 209, 230, 233
TfiI	GAWTC	3 cut(s)	104, 334, 547
Tru1I	TTAA	2 cut(s)	149, 830
Tru9I	TTAA	2 cut(s)	149, 830
TscAI	CASTG	4 cut(s)	201, 387, 859, 949
TseFI	GTSAC	2 cut(s)	771, 1148
TseI	GCWGC	8 cut(s)	182, 191, 215, 218, 323, 451, 849, 1064
Tsp45I	GTSAC	2 cut(s)	771, 1148
TspDTI	ATGAA	3 cut(s)	153, 344, 732
TspRI	CASTG	4 cut(s)	201, 387, 859, 949
XbaI	TCTAGA	1 cut(s)	836
XceI	RCATGY	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	744
XspI	CTAG	5 cut(s)	81, 492, 737, 794, 837
ZrmI	AGTACT	1 cut(s)	908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.