Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0009886

Physical Location & Seq

Genomic Coordinates Forward (+)

19127060 .. 19130342

Gene Structure 3283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g20790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGGCTTTTTCGGGCGACTCTTCGGCTGCAAACTCTTCAAAAACAACCCTTCTCCGACCACCAAGCACACCAACGAGGAAAAGAGTCAAAAGACTACTACTTCTGGGTCTAACAAGCACAAGCTCGGTGCCTCCGCGTCAGCAGATGCTGCTCAAGGATGGGCGGGCCTGGACGCCAACAAGCACGCGATTGCCGTAGCCGCCGCTACGGCCGCCGTCGCTGAGGCCGCTCTCGCGGCGGCTCATGCGGCGGCTGAGGTCGTTCGCCTCACTAATGGTGCTCCACCCGGGACCTCCTCGCAAGTTAGCCATCCCTCCGCGGCACCGTCAATTGTCCGACGCCATCTCGCCGCCGTGAAGATACAGTCGGCTTTCCGGCGATACCTGGCAAGAAGGGCCCTAAGAGCACTCAAATCACTGGTGAAGCTTCAAGCTTTGGTGAGAGGCCGCATTGTGAGAAAGCAATCGGCAGACATGCTCAGGCGTATGCAGACACTGGTCAGAGTCCAAGCCCGAGCGCGTGCAAGTCAATCACTCATGTCTGAAACACTACATTCTAGCAGTAAATCCTCACTATCGTATCACCCGCTGCCAGAAAGCCCTGACAAAATTGGATACCAGCACCGCACTTATAGCAGCAAATTTGACGCGCCCTCAATACTGCAGAGATGCCGTTCAAATTCAAACGTAAGGGATGCCATAAATCTAGATAGAAGACGGCTGGCATCAGGTTGGTTAGACCAGTGGATGGAAGAAAGTGCATGGGACAACCGCCGAGATGGTTCACTGAGATATGAGCACTCAGATGATGTGAAGGTTGACAAAATTCTTGAAGTAGATACTTGGAAGCCTCGCTTGGGTTCCCAACGTAGACCCCAAACCTTTCAAACAGCACATCGCGTTGTGTCGTCATCGATCATTCCAACCCAAACTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

313

Amino Acids

34.37

Weight (kDa)

10.83

Isoelectric Point (pI)

50.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07240 AT5G07240 AT5G62070
fragaria_vesca	FvH4_7g29094
malus_domestica	MD01G1197700.v1.1 MD07G1265200.v1.1
prunus_persica	Prupe.2G291100_v2.0.a1
pyrus_communis	pycom01g20790 pycom07g24360
rosa_chinensis	RchiOBHm_Chr1g0376831
rosa_laevigata	RLG00000026566
rosa_multiflora	Rmu_co8362177.1_g000001 Rmu_sc0002113.1_g000005
rosa_roxburghii	Rroxscaffold_4G00281690
rosa_rugosa	Rorug01G0398800 Rorug01G0398900
rosa_samantha	Rh1AG416100 Rh1BG375500 Rh1CG389300 Rh1DG406100
rosa_wichuraiana	Rw1G036500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	128, 322
AccB7I	CCANNNNNTGG	1 cut(s)	748
AccBSI	CCGCTC	1 cut(s)	230
AccI	GTMKAC	1 cut(s)	871
AccII	CGCG	7 cut(s)	137, 188, 236, 320, 520, 650, 900
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	3 cut(s)	641, 679, 825
AcyI	GRCGYC	2 cut(s)	174, 340
AfiI	CCNNNNNNNGG	2 cut(s)	748, 857
AgsI	TTSAA	6 cut(s)	40, 431, 678, 684, 833, 887
AjnI	CCWGG	2 cut(s)	168, 384
AjuI	GAANNNNNNNTTGG	2 cut(s)	839, 871
AluBI	AGCT	3 cut(s)	124, 427, 434
AluI	AGCT	3 cut(s)	124, 427, 434
Alw21I	GWGCWC	3 cut(s)	283, 409, 801
AlwNI	CAGNNNCTG	2 cut(s)	149, 496
Ama87I	CYCGRG	2 cut(s)	287, 513
AoxI	GGCC	5 cut(s)	166, 210, 225, 396, 445
ApaI	GGGCCC	1 cut(s)	400
ApeKI	GCWGC	4 cut(s)	27, 149, 589, 636
ApoI	RAATTY	3 cut(s)	641, 679, 825
AspLEI	GCGC	2 cut(s)	520, 652
AspS9I	GGNCC	4 cut(s)	166, 291, 396, 397
AsuC2I	CCSGG	2 cut(s)	288, 289
AsuHPI	GGTGA	3 cut(s)	433, 451, 575
AvaI	CYCGRG	2 cut(s)	287, 513
AvaII	GGWCC	1 cut(s)	291
BaeGI	GKGCMC	1 cut(s)	400
BaeI	ACNNNNGTAYC	2 cut(s)	563, 596
BanI	GGYRCC	2 cut(s)	128, 322
BanII	GRGCYC	1 cut(s)	400
BbsI	GAAGAC	1 cut(s)	721
Bbv12I	GWGCWC	3 cut(s)	283, 409, 801
BbvCI	CCTCAGC	2 cut(s)	222, 255
BbvI	GCAGC	4 cut(s)	14, 136, 576, 648
BccI	CCATC	5 cut(s)	153, 318, 351, 742, 773
BceAI	ACGGC	6 cut(s)	179, 200, 225, 338, 657, 734
BciT130I	CCWGG	2 cut(s)	170, 386
BciVI	GTATCC	1 cut(s)	608
BcnI	CCSGG	2 cut(s)	288, 289
BfaI	CTAG	2 cut(s)	558, 707
BfmI	CTRYAG	1 cut(s)	662
BfuI	GTATCC	1 cut(s)	608
BglI	GCCNNNNNGGC	1 cut(s)	209
Bme1390I	CCNGG	4 cut(s)	170, 288, 289, 386
Bme18I	GGWCC	1 cut(s)	291
BmeT110I	CYCGRG	2 cut(s)	287, 513
BmgT120I	GGNCC	4 cut(s)	166, 291, 396, 397
BmiI	GGNNCC	5 cut(s)	130, 292, 324, 398, 862
BmrFI	CCNGG	4 cut(s)	170, 288, 289, 386
BmsI	GCATC	4 cut(s)	136, 659, 685, 734
BoxI	GACNNNNGTC	1 cut(s)	497
BpiI	GAAGAC	1 cut(s)	721
Bpu10I	CCTNAGC	3 cut(s)	222, 255, 479
BpuEI	CTTGAG	1 cut(s)	138
BpuMI	CCSGG	2 cut(s)	288, 289
Bsa29I	ATCGAT	1 cut(s)	914
BsaHI	GRCGYC	2 cut(s)	174, 340
BsaJI	CCNNGG	2 cut(s)	287, 318
Bsc4I	CCNNNNNNNGG	2 cut(s)	748, 857
Bse1I	ACTGG	3 cut(s)	423, 501, 742
BseBI	CCWGG	2 cut(s)	170, 386
BseCI	ATCGAT	1 cut(s)	914
BseDI	CCNNGG	2 cut(s)	287, 318
BseGI	GGATG	4 cut(s)	164, 310, 700, 753
BseLI	CCNNNNNNNGG	2 cut(s)	748, 857
BseMII	CTCAG	5 cut(s)	213, 246, 493, 779, 816
BseNI	ACTGG	3 cut(s)	423, 501, 742
BseRI	GAGGAG	1 cut(s)	286
BseSI	GKGCMC	1 cut(s)	400
BseX3I	CGGCCG	1 cut(s)	210
BseXI	GCAGC	4 cut(s)	14, 136, 576, 648
Bsh1236I	CGCG	7 cut(s)	137, 188, 236, 320, 520, 650, 900
Bsh1285I	CGRYCG	1 cut(s)	213
BshFI	GGCC	5 cut(s)	168, 212, 227, 398, 447
BshNI	GGYRCC	2 cut(s)	128, 322
BshVI	ATCGAT	1 cut(s)	914
BsiEI	CGRYCG	1 cut(s)	213
BsiHKAI	GWGCWC	3 cut(s)	283, 409, 801
BsiHKCI	CYCGRG	2 cut(s)	287, 513
BsiSI	CCGG	2 cut(s)	288, 376
BslFI	GGGAC	2 cut(s)	304, 779
BslI	CCNNNNNNNGG	2 cut(s)	748, 857
BsmFI	GGGAC	2 cut(s)	304, 779
BsnI	GGCC	5 cut(s)	168, 212, 227, 398, 447
BsoBI	CYCGRG	2 cut(s)	287, 513
Bsp120I	GGGCCC	1 cut(s)	396
Bsp1286I	GDGCHC	4 cut(s)	283, 400, 409, 801
Bsp143I	GATC	1 cut(s)	915
BspANI	GGCC	5 cut(s)	168, 212, 227, 398, 447
BspCNI	CTCAG	5 cut(s)	214, 247, 492, 780, 815
BspDI	ATCGAT	1 cut(s)	914
BspFNI	CGCG	7 cut(s)	137, 188, 236, 320, 520, 650, 900
BspLI	GGNNCC	5 cut(s)	130, 292, 324, 398, 862
BspMAI	CTGCAG	1 cut(s)	666
BspT107I	GGYRCC	2 cut(s)	128, 322
BsrBI	CCGCTC	1 cut(s)	230
BsrI	ACTGG	3 cut(s)	423, 501, 742
BssECI	CCNNGG	2 cut(s)	287, 318
BssMI	GATC	1 cut(s)	915
BssNI	GRCGYC	2 cut(s)	174, 340
Bst2UI	CCWGG	2 cut(s)	170, 386
Bst4CI	ACNGT	2 cut(s)	327, 366
Bst6I	CTCTTC	2 cut(s)	26, 41
BstACI	GRCGYC	2 cut(s)	174, 340
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstC8I	GCNNGC	4 cut(s)	166, 186, 522, 723
BstDEI	CTNAG	6 cut(s)	222, 255, 401, 479, 788, 802
BstDSI	CCRYGG	1 cut(s)	318
BstF5I	GGATG	4 cut(s)	164, 310, 700, 753
BstFNI	CGCG	7 cut(s)	137, 188, 236, 320, 520, 650, 900
BstHHI	GCGC	2 cut(s)	520, 652
BstKTI	GATC	1 cut(s)	918
BstMBI	GATC	1 cut(s)	915
BstMCI	CGRYCG	1 cut(s)	213
BstNI	CCWGG	2 cut(s)	170, 386
BstNSI	RCATGY	1 cut(s)	478
BstPAI	GACNNNNGTC	1 cut(s)	497
BstSCI	CCNGG	4 cut(s)	168, 286, 287, 384
BstSFI	CTRYAG	1 cut(s)	662
BstSLI	GKGCMC	1 cut(s)	400
BstUI	CGCG	7 cut(s)	137, 188, 236, 320, 520, 650, 900
BstV1I	GCAGC	4 cut(s)	14, 136, 576, 648
BstV2I	GAAGAC	1 cut(s)	721
BstZI	CGGCCG	1 cut(s)	210
Bsu15I	ATCGAT	1 cut(s)	914
BsuI	GTATCC	1 cut(s)	608
BsuRI	GGCC	5 cut(s)	168, 212, 227, 398, 447
BsuTUI	ATCGAT	1 cut(s)	914
BtgI	CCRYGG	1 cut(s)	318
BtgZI	GCGATG	1 cut(s)	881
BtsCI	GGATG	4 cut(s)	164, 310, 700, 753
BtsIMutI	CAGTG	4 cut(s)	416, 494, 749, 785
Cac8I	GCNNGC	4 cut(s)	166, 186, 522, 723
CaiI	CAGNNNCTG	2 cut(s)	149, 496
CfoI	GCGC	2 cut(s)	520, 652
Cfr13I	GGNCC	4 cut(s)	166, 291, 396, 397
Cfr42I	CCGCGG	1 cut(s)	321
Cfr9I	CCCGGG	1 cut(s)	287
ClaI	ATCGAT	1 cut(s)	914
CseI	GACGC	4 cut(s)	126, 182, 348, 656
CviAII	CATG	4 cut(s)	245, 475, 538, 762
DdeI	CTNAG	6 cut(s)	222, 255, 401, 479, 788, 802
DpnI	GATC	1 cut(s)	917
DpnII	GATC	1 cut(s)	915
EaeI	YGGCCR	1 cut(s)	210
EagI	CGGCCG	1 cut(s)	210
Eam1104I	CTCTTC	2 cut(s)	26, 41
EarI	CTCTTC	2 cut(s)	26, 41
EclXI	CGGCCG	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	291
Eco52I	CGGCCG	1 cut(s)	210
Eco88I	CYCGRG	2 cut(s)	287, 513
EcoO109I	RGGNCCY	3 cut(s)	291, 396, 397
EcoRII	CCWGG	2 cut(s)	168, 384
EcoT38I	GRGCYC	1 cut(s)	400
FaeI	CATG	4 cut(s)	248, 478, 541, 765
FaiI	YATR	9 cut(s)	246, 476, 488, 539, 633, 701, 763, 795, 937
FalI	AAGNNNNNCTT	2 cut(s)	839, 871
FaqI	GGGAC	2 cut(s)	304, 779
FatI	CATG	4 cut(s)	244, 474, 537, 761
FauI	CCCGC	2 cut(s)	157, 594
FblI	GTMKAC	1 cut(s)	871
FokI	GGATG	4 cut(s)	171, 297, 707, 760
FriOI	GRGCYC	1 cut(s)	400
FspBI	CTAG	2 cut(s)	558, 707
GlaI	GCGC	2 cut(s)	519, 651
HaeIII	GGCC	5 cut(s)	168, 212, 227, 398, 447
HapII	CCGG	2 cut(s)	288, 376
HgaI	GACGC	4 cut(s)	126, 182, 348, 656
HhaI	GCGC	2 cut(s)	520, 652
Hin1I	GRCGYC	2 cut(s)	174, 340
Hin1II	CATG	4 cut(s)	248, 478, 541, 765
Hin6I	GCGC	2 cut(s)	518, 650
HinP1I	GCGC	2 cut(s)	518, 650
HincII	GTYRAC	1 cut(s)	820
HindII	GTYRAC	1 cut(s)	820
HindIII	AAGCTT	2 cut(s)	425, 432
HinfI	GANTC	3 cut(s)	18, 85, 504
HpaII	CCGG	2 cut(s)	288, 376
HphI	GGTGA	3 cut(s)	433, 451, 575
Hpy166II	GTNNAC	3 cut(s)	785, 820, 872
Hpy188I	TCNGA	5 cut(s)	57, 338, 503, 544, 805
Hpy188III	TCNNGA	2 cut(s)	707, 830
Hpy8I	GTNNAC	3 cut(s)	785, 820, 872
Hpy99I	CGWCG	2 cut(s)	221, 342
HpyAV	CCTTC	3 cut(s)	60, 387, 808
HpyCH4III	ACNGT	2 cut(s)	327, 366
HpyCH4IV	ACGT	2 cut(s)	687, 868
HpyCH4V	TGCA	5 cut(s)	30, 490, 524, 664, 761
HpyF3I	CTNAG	6 cut(s)	222, 255, 401, 479, 788, 802
HpySE526I	ACGT	2 cut(s)	687, 868
Hsp92I	GRCGYC	2 cut(s)	174, 340
Hsp92II	CATG	4 cut(s)	248, 478, 541, 765
HspAI	GCGC	2 cut(s)	518, 650
KspI	CCGCGG	1 cut(s)	321
Kzo9I	GATC	1 cut(s)	915
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	4 cut(s)	14, 136, 576, 648
LweI	GCATC	4 cut(s)	136, 659, 685, 734
MaeI	CTAG	2 cut(s)	558, 707
MaeII	ACGT	2 cut(s)	687, 868
MalI	GATC	1 cut(s)	917
MbiI	CCGCTC	1 cut(s)	230
MboI	GATC	1 cut(s)	915
MboII	GAAGA	5 cut(s)	13, 28, 370, 726, 764
MfeI	CAATTG	1 cut(s)	330
MhlI	GDGCHC	4 cut(s)	283, 400, 409, 801
MluCI	AATT	5 cut(s)	330, 609, 641, 679, 825
MlyI	GAGTC	3 cut(s)	12, 94, 513
MmeI	TCCRAC	2 cut(s)	80, 361
MslI	CAYNNNNRTG	1 cut(s)	804
MspA1I	CMGCKG	2 cut(s)	320, 589
MspI	CCGG	2 cut(s)	288, 376
MspR9I	CCNGG	4 cut(s)	170, 288, 289, 386
MunI	CAATTG	1 cut(s)	330
MvaI	CCWGG	2 cut(s)	170, 386
MvnI	CGCG	7 cut(s)	137, 188, 236, 320, 520, 650, 900
NciI	CCSGG	2 cut(s)	288, 289
NdeII	GATC	1 cut(s)	915
NlaIII	CATG	4 cut(s)	248, 478, 541, 765
NlaIV	GGNNCC	5 cut(s)	130, 292, 324, 398, 862
NmeAIII	GCCGAG	1 cut(s)	800
NspI	RCATGY	1 cut(s)	478
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PflMI	CCANNNNNTGG	1 cut(s)	748
PleI	GAGTC	3 cut(s)	12, 93, 512
PpsI	GAGTC	3 cut(s)	12, 93, 512
PpuMI	RGGWCCY	1 cut(s)	291
PshAI	GACNNNNGTC	1 cut(s)	497
Psp5II	RGGWCCY	1 cut(s)	291
Psp6I	CCWGG	2 cut(s)	168, 384
PspGI	CCWGG	2 cut(s)	168, 384
PspN4I	GGNNCC	5 cut(s)	130, 292, 324, 398, 862
PspOMI	GGGCCC	1 cut(s)	396
PspPI	GGNCC	4 cut(s)	166, 291, 396, 397
PspPPI	RGGWCCY	1 cut(s)	291
PstI	CTGCAG	1 cut(s)	666
PstNI	CAGNNNCTG	2 cut(s)	149, 496
RseI	CAYNNNNRTG	1 cut(s)	804
SacII	CCGCGG	1 cut(s)	321
Sau3AI	GATC	1 cut(s)	915
Sau96I	GGNCC	4 cut(s)	166, 291, 396, 397
SchI	GAGTC	3 cut(s)	12, 94, 513
ScrFI	CCNGG	4 cut(s)	170, 288, 289, 386
SduI	GDGCHC	4 cut(s)	283, 400, 409, 801
SfaNI	GCATC	4 cut(s)	136, 659, 685, 734
SfcI	CTRYAG	1 cut(s)	662
Sfr303I	CCGCGG	1 cut(s)	321
SgrBI	CCGCGG	1 cut(s)	321
SinI	GGWCC	1 cut(s)	291
SmaI	CCCGGG	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	804
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
Sse9I	AATT	5 cut(s)	330, 609, 641, 679, 825
SspMI	CTAG	2 cut(s)	558, 707
StyD4I	CCNGG	4 cut(s)	168, 286, 287, 384
TaaI	ACNGT	2 cut(s)	327, 366
TaiI	ACGT	2 cut(s)	690, 871
TaqI	TCGA	1 cut(s)	914
TasI	AATT	5 cut(s)	330, 609, 641, 679, 825
TscAI	CASTG	4 cut(s)	423, 501, 749, 792
TseI	GCWGC	4 cut(s)	27, 149, 589, 636
TspMI	CCCGGG	1 cut(s)	287
TspRI	CASTG	4 cut(s)	423, 501, 749, 792
Van91I	CCANNNNNTGG	1 cut(s)	748
VpaK11BI	GGWCC	1 cut(s)	291
XapI	RAATTY	3 cut(s)	641, 679, 825
XbaI	TCTAGA	1 cut(s)	706
XceI	RCATGY	1 cut(s)	478
XmaI	CCCGGG	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	871
XspI	CTAG	2 cut(s)	558, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.