Rmu_co8362177.1_g000001

Protein of unknown function (DUF4005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8362177.1
OG0009886
Physical Location & Seq
Forward (+)
1 .. 875
875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8362177.1_g000001.1.cds

Sequence Viewer

Length: 747 bp
aggtgtggttcaaattcaaacgcaagggatgccaccagtctggatagaagacgtctggcctcaggatggttagatcggtggatggaagaaagtgtgtggaacaaccgccgtgatgcttcatcactgagatatgtgcaagcagataatgagaaggttgacaaaatccttgaagtagatacttggaaacctcacttgggctcccaacgaaataccagagcctttcaaaccgcacagcatgttatggcttcggataattacagtccaatgtttatgacattcgattccccgtccaaacgcacaacaaaagaaccaaacttgattccaagtcagtcttccatggattacttctcatcgagctcaatgaaatatcctataggaaaagatgaagtaccggctttaagaactgcacagaacagcccacaagcattttctgcctcatcgagacctggaagtagtagtgctagaagaggccacttcacgccgacaaggagcgagtactcatggggtttctttagcagctatgccggttaccctagctacatggctaacacggaatcatcccgggctaaggtccggtcacagagtgccccaagacaaaggctcgaatttgataaatatagtttgacaaaaaaatccgtccaggatttttgcgaagcaggcacatgttcagaaacaggtttagctcaagatactgatttcaggaataaagcgtttttgagctctagccactcgaatagactacggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4005 IQ

Protein Analysis

248

Amino Acids

28.11

Weight (kDa)

9.65

Isoelectric Point (pI)

66.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 55
AciI CCGC 2 cut(s) 106, 228
AcsI RAATTY 2 cut(s) 13, 605
AcyI GRCGYC 1 cut(s) 52
AdeI CACNNNGTG 1 cut(s) 584
AfaI GTAC 2 cut(s) 390, 497
AfiI CCNNNNNNNGG 3 cut(s) 66, 194, 568
AflIII ACRYGT 1 cut(s) 662
AgsI TTSAA 4 cut(s) 12, 18, 170, 224
AjnI CCWGG 2 cut(s) 445, 639
AjuI GAANNNNNNNTTGG 4 cut(s) 176, 208, 316, 348
AluBI AGCT 5 cut(s) 357, 519, 537, 683, 720
AluI AGCT 5 cut(s) 357, 519, 537, 683, 720
Alw21I GWGCWC 2 cut(s) 359, 722
Alw26I GTCTC 1 cut(s) 436
Ama87I CYCGRG 1 cut(s) 561
AoxI GGCC 2 cut(s) 57, 469
ApeKI GCWGC 1 cut(s) 516
ApoI RAATTY 2 cut(s) 13, 605
AspS9I GGNCC 1 cut(s) 571
AsuC2I CCSGG 2 cut(s) 562, 563
AvaI CYCGRG 1 cut(s) 561
AvaII GGWCC 1 cut(s) 571
AxyI CCTNAGG 1 cut(s) 61
BaeGI GKGCMC 1 cut(s) 589
BanII GRGCYC 3 cut(s) 200, 359, 722
BbsI GAAGAC 2 cut(s) 55, 324
Bbv12I GWGCWC 2 cut(s) 359, 722
BbvI GCAGC 1 cut(s) 528
BccI CCATC 2 cut(s) 60, 76
BceAI ACGGC 1 cut(s) 93
BciT130I CCWGG 2 cut(s) 447, 641
BcnI CCSGG 2 cut(s) 562, 563
BcoDI GTCTC 1 cut(s) 436
BfaI CTAG 3 cut(s) 462, 534, 723
BfmI CTRYAG 1 cut(s) 372
BisI GCNGC 1 cut(s) 517
BlsI GCNGC 1 cut(s) 518
BmcAI AGTACT 1 cut(s) 497
Bme1390I CCNGG 4 cut(s) 447, 562, 563, 641
Bme18I GGWCC 1 cut(s) 571
BmeT110I CYCGRG 1 cut(s) 561
BmgT120I GGNCC 1 cut(s) 571
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 4 cut(s) 447, 562, 563, 641
BmsI GCATC 2 cut(s) 19, 103
BpiI GAAGAC 2 cut(s) 55, 324
Bpu10I CCTNAGC 1 cut(s) 567
BpuEI CTTGAG 1 cut(s) 669
BpuMI CCSGG 2 cut(s) 562, 563
BsaHI GRCGYC 1 cut(s) 52
BsaI GGTCTC 1 cut(s) 436
BsaJI CCNNGG 2 cut(s) 336, 561
BsaWI WCCGGW 1 cut(s) 573
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 194, 568
Bse118I RCCGGY 2 cut(s) 391, 524
Bse1I ACTGG 1 cut(s) 36
Bse21I CCTNAGG 1 cut(s) 61
BseBI CCWGG 2 cut(s) 447, 641
BseDI CCNNGG 2 cut(s) 336, 561
BseGI GGATG 4 cut(s) 34, 71, 87, 557
BseLI CCNNNNNNNGG 3 cut(s) 66, 194, 568
BseMII CTCAG 2 cut(s) 75, 116
BseNI ACTGG 1 cut(s) 36
BseSI GKGCMC 1 cut(s) 589
BseXI GCAGC 1 cut(s) 528
BsgI GTGCAG 1 cut(s) 390
BshFI GGCC 2 cut(s) 59, 471
BsiHKAI GWGCWC 2 cut(s) 359, 722
BsiHKCI CYCGRG 1 cut(s) 561
BsiSI CCGG 4 cut(s) 392, 525, 562, 574
BslI CCNNNNNNNGG 3 cut(s) 66, 194, 568
BsmAI GTCTC 1 cut(s) 436
BsnI GGCC 2 cut(s) 59, 471
Bso31I GGTCTC 1 cut(s) 436
BsoBI CYCGRG 1 cut(s) 561
Bsp1286I GDGCHC 4 cut(s) 200, 359, 589, 722
Bsp143I GATC 1 cut(s) 73
Bsp19I CCATGG 1 cut(s) 336
BspACI CCGC 2 cut(s) 106, 228
BspANI GGCC 2 cut(s) 59, 471
BspCNI CTCAG 2 cut(s) 74, 117
BspLI GGNNCC 1 cut(s) 199
BspTNI GGTCTC 1 cut(s) 436
BsrFI RCCGGY 2 cut(s) 391, 524
BsrI ACTGG 1 cut(s) 36
BssAI RCCGGY 2 cut(s) 391, 524
BssECI CCNNGG 2 cut(s) 336, 561
BssMI GATC 1 cut(s) 73
BssNI GRCGYC 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 336
Bst2UI CCWGG 2 cut(s) 447, 641
Bst4CI ACNGT 2 cut(s) 260, 744
Bst6I CTCTTC 1 cut(s) 460
BstACI GRCGYC 1 cut(s) 52
BstAPI GCANNNNNTGC 2 cut(s) 29, 431
BstC8I GCNNGC 2 cut(s) 138, 658
BstDEI CTNAG 3 cut(s) 61, 125, 567
BstDSI CCRYGG 1 cut(s) 336
BstEII GGTNACC 1 cut(s) 527
BstF5I GGATG 4 cut(s) 34, 71, 87, 557
BstKTI GATC 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 436
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 3 cut(s) 29, 431, 657
BstNI CCWGG 2 cut(s) 447, 641
BstNSI RCATGY 2 cut(s) 239, 666
BstPI GGTNACC 1 cut(s) 527
BstSCI CCNGG 4 cut(s) 445, 560, 561, 639
BstSFI CTRYAG 1 cut(s) 372
BstSLI GKGCMC 1 cut(s) 589
BstV1I GCAGC 1 cut(s) 528
BstV2I GAAGAC 2 cut(s) 55, 324
BstXI CCANNNNNNTGG 1 cut(s) 40
Bsu36I CCTNAGG 1 cut(s) 61
BsuRI GGCC 2 cut(s) 59, 471
BtgI CCRYGG 1 cut(s) 336
BtsCI GGATG 4 cut(s) 34, 71, 87, 557
BtsIMutI CAGTG 1 cut(s) 122
Cac8I GCNNGC 2 cut(s) 138, 658
Cfr10I RCCGGY 2 cut(s) 391, 524
Cfr13I GGNCC 1 cut(s) 571
Cfr9I CCCGGG 1 cut(s) 561
Csp6I GTAC 2 cut(s) 389, 496
CviAII CATG 5 cut(s) 236, 337, 501, 541, 663
CviQI GTAC 2 cut(s) 389, 496
DdeI CTNAG 3 cut(s) 61, 125, 567
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
DraIII CACNNNGTG 1 cut(s) 584
Eam1104I CTCTTC 1 cut(s) 460
EarI CTCTTC 1 cut(s) 460
Ecl136II GAGCTC 2 cut(s) 357, 720
Eco130I CCWWGG 1 cut(s) 336
Eco24I GRGCYC 3 cut(s) 200, 359, 722
Eco31I GGTCTC 1 cut(s) 436
Eco47I GGWCC 1 cut(s) 571
Eco53kI GAGCTC 2 cut(s) 357, 720
Eco81I CCTNAGG 1 cut(s) 61
Eco88I CYCGRG 1 cut(s) 561
Eco91I GGTNACC 1 cut(s) 527
EcoICRI GAGCTC 2 cut(s) 357, 720
EcoO65I GGTNACC 1 cut(s) 527
EcoRII CCWGG 2 cut(s) 445, 639
EcoT14I CCWWGG 1 cut(s) 336
EcoT38I GRGCYC 3 cut(s) 200, 359, 722
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 5 cut(s) 239, 340, 504, 544, 666
FalI AAGNNNNNCTT 2 cut(s) 316, 348
FatI CATG 5 cut(s) 235, 336, 500, 540, 662
Fnu4HI GCNGC 1 cut(s) 517
FokI GGATG 4 cut(s) 41, 78, 94, 544
FriOI GRGCYC 3 cut(s) 200, 359, 722
Fsp4HI GCNGC 1 cut(s) 517
FspBI CTAG 3 cut(s) 462, 534, 723
GluI GCNGC 1 cut(s) 517
HaeIII GGCC 2 cut(s) 59, 471
HapII CCGG 4 cut(s) 392, 525, 562, 574
Hin1I GRCGYC 1 cut(s) 52
Hin1II CATG 5 cut(s) 239, 340, 504, 544, 666
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 3 cut(s) 281, 319, 554
HpaII CCGG 4 cut(s) 392, 525, 562, 574
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 250, 670
Hpy188III TCNNGA 5 cut(s) 41, 63, 441, 686, 700
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 2 cut(s) 260, 744
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 2 cut(s) 136, 407
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 431, 657
HpyF3I CTNAG 3 cut(s) 61, 125, 567
HpySE526I ACGT 1 cut(s) 52
Hsp92I GRCGYC 1 cut(s) 52
Hsp92II CATG 5 cut(s) 239, 340, 504, 544, 666
Kzo9I GATC 1 cut(s) 73
LmnI GCTCC 2 cut(s) 203, 489
Lsp1109I GCAGC 1 cut(s) 528
LweI GCATC 2 cut(s) 19, 103
MaeI CTAG 3 cut(s) 462, 534, 723
MaeII ACGT 1 cut(s) 52
MaeIII GTNAC 2 cut(s) 527, 576
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 4 cut(s) 60, 98, 324, 477
MhlI GDGCHC 4 cut(s) 200, 359, 589, 722
MluCI AATT 3 cut(s) 13, 253, 605
MnlI CCTC 4 cut(s) 70, 198, 445, 461
MseI TTAA 1 cut(s) 398
MspI CCGG 4 cut(s) 392, 525, 562, 574
MspR9I CCNGG 4 cut(s) 447, 562, 563, 641
MvaI CCWGG 2 cut(s) 447, 641
MwoI GCNNNNNNNGC 3 cut(s) 29, 431, 657
NciI CCSGG 2 cut(s) 562, 563
NcoI CCATGG 1 cut(s) 336
NdeII GATC 1 cut(s) 73
NlaIII CATG 5 cut(s) 239, 340, 504, 544, 666
NlaIV GGNNCC 1 cut(s) 199
NmuCI GTSAC 1 cut(s) 576
NspI RCATGY 2 cut(s) 239, 666
PciI ACATGT 1 cut(s) 662
PfeI GAWTC 3 cut(s) 281, 319, 554
PfoI TCCNGGA 1 cut(s) 639
PkrI GCNGC 1 cut(s) 518
PscI ACATGT 1 cut(s) 662
Psp124BI GAGCTC 2 cut(s) 359, 722
Psp6I CCWGG 2 cut(s) 445, 639
PspEI GGTNACC 1 cut(s) 527
PspGI CCWGG 2 cut(s) 445, 639
PspN4I GGNNCC 1 cut(s) 199
PspPI GGNCC 1 cut(s) 571
RsaI GTAC 2 cut(s) 390, 497
RsaNI GTAC 2 cut(s) 389, 496
SacI GAGCTC 2 cut(s) 359, 722
SaqAI TTAA 1 cut(s) 398
SatI GCNGC 1 cut(s) 517
Sau3AI GATC 1 cut(s) 73
Sau96I GGNCC 1 cut(s) 571
ScaI AGTACT 1 cut(s) 497
ScrFI CCNGG 4 cut(s) 447, 562, 563, 641
SduI GDGCHC 4 cut(s) 200, 359, 589, 722
SfaNI GCATC 2 cut(s) 19, 103
SfcI CTRYAG 1 cut(s) 372
SinI GGWCC 1 cut(s) 571
SmaI CCCGGG 1 cut(s) 563
SmlI CTYRAG 1 cut(s) 684
SmoI CTYRAG 1 cut(s) 684
Sse9I AATT 3 cut(s) 13, 253, 605
SsiI CCGC 2 cut(s) 106, 228
SspMI CTAG 3 cut(s) 462, 534, 723
SstI GAGCTC 2 cut(s) 359, 722
StyD4I CCNGG 4 cut(s) 445, 560, 561, 639
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 2 cut(s) 260, 744
TaiI ACGT 1 cut(s) 55
TaqI TCGA 5 cut(s) 279, 353, 440, 603, 731
TasI AATT 3 cut(s) 13, 253, 605
TatI WGTACW 1 cut(s) 495
TfiI GAWTC 3 cut(s) 281, 319, 554
Tru1I TTAA 1 cut(s) 398
Tru9I TTAA 1 cut(s) 398
TscAI CASTG 1 cut(s) 129
TseFI GTSAC 1 cut(s) 576
TseI GCWGC 1 cut(s) 516
Tsp45I GTSAC 1 cut(s) 576
TspDTI ATGAA 3 cut(s) 108, 377, 399
TspGWI ACGGA 2 cut(s) 566, 625
TspMI CCCGGG 1 cut(s) 561
TspRI CASTG 1 cut(s) 129
VpaK11BI GGWCC 1 cut(s) 571
XapI RAATTY 2 cut(s) 13, 605
XceI RCATGY 2 cut(s) 239, 666
XmaI CCCGGG 1 cut(s) 561
XspI CTAG 3 cut(s) 462, 534, 723
ZraI GACGTC 1 cut(s) 53
ZrmI AGTACT 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.