Rh1CG389300

Protein of unknown function (DUF4005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0009886
Physical Location & Seq
Forward (+)
65849456 .. 65852325
2870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG389300.1

Sequence Viewer

Length: 1326 bp
ATGGGCTTTTTCCGGAGACTCTTCGGCCCGAAAAAGCCCAAAAAGAAGACTAACAAAGCCGAAGCCTCCACTTCAGCTTCTCAAGAATGGGGCTTGGACTCCAACAAGCACGCAATAGCGGTGGCGGCAGCTACTGCCGCCGTGGCCGAGGCAGCTCTCGCGGCGGCTCATGCAGCGGCTGAGGTCGTCAGGCTCACTAACGGCGTTGAGACTTCGGGGAACGTTAGCTTGCCAGTTAGAGTCAGCCGTCACCGCCACCTGGCCGCCGTTAAGATACAGTCAGCTTTCCGGAGATACCTGGCAAGGAGGGCCTTAAGGGCACTTAAAGCACTGGTGAAGCTTCAAGCATTGGTGAGAGGCCACATAGTGAGGAAACAAACGGCGGACATGCTCAGGCGCATGCAGACACTGGTTCGACTCCAGGCCCGTGCACGGGCAACTCGCTCACTCACGTCAGAATCAGTACATTCTAGCAGCAAATCCTCCCTGTCTTACAATCCTCTCCCGGAAAGTCCTGACAAACTTGGATACCAGCACCGTGTTTATAGTAGCAAATTTGATGGGCCTTCATTGCTGAAGAGGTGTGGTTCAAATTCAAACGCAAGGGATGCCACCAGTCTGGACAGAAGACGTCTGGCCTCAGGATGGTTAGATCGGTGGATGGAAGAAAGTGAGTGGAACATCCGCCGTGATGCTTCATCACTGAGATATGTGCAAGCAGATAATGAGAAGGTTGACAAAATCCTTGAAGTGGATACTTGGAAACCTCACTTGGGCTCCCAACGAAATGCCAGAGCCTTTCAAACCGCACAGCATGTTATGGCTTCGGATAATTACAGTCCAATGTTTATGACATTCGATTCCCCGTCCAAACGCACAACAAAAGAACCAAACTTGATTCCAAGTCAATCTTCCATGGATTACTTCTCATCGAGCTCAATGAAATATCCTATAGGAAAAGATGAAGTACCGGCTTTAAGAACTGCACAGAACAGCCCACAAGCATTTTCTGCCTCATCGAGACCTGGAAGTAGTAGTGCTAGAAGAGGCCACTTCACGCCGACAAGGAGCGAGTACTCATGGGGTTTCTTTAGCAGCTATGCCGGTTACCCTAGCTACATGGCTAACACGGAATCATCCCGGGCTAAGGTTCGGTCACAGAGTGCCCCAAGACAAAGGCTCGAATTTGATAAATATAGTTTGACAAAAAAATCCGTCCAGGAGTTTTGCGAAGCAGGCACATGTTCAGAAACAGGTTTAGCTCTAGATACTGATTTCAGGAATAAAGCGTTTCTGAGCTCTAGCCACTCGAATAGACTACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4005 IQ

Protein Analysis

441

Amino Acids

49.19

Weight (kDa)

10.37

Isoelectric Point (pI)

59.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4005 PF13178 339 - 394 5.8e-13 Protein of unknown function (DUF4005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 634
AccII CGCG 1 cut(s) 161
AccIII TCCGGA 2 cut(s) 12, 288
AclI AACGTT 1 cut(s) 222
AcoI YGGCCR 2 cut(s) 144, 261
AcsI RAATTY 3 cut(s) 554, 592, 1184
AcuI CTGAAG 2 cut(s) 57, 596
AcyI GRCGYC 1 cut(s) 631
AdeI CACNNNGTG 2 cut(s) 367, 1163
AfaI GTAC 3 cut(s) 465, 969, 1076
AfiI CCNNNNNNNGG 7 cut(s) 259, 432, 433, 645, 751, 773, 1147
AflII CTTAAG 1 cut(s) 313
AflIII ACRYGT 1 cut(s) 1241
AgsI TTSAA 5 cut(s) 344, 591, 597, 749, 803
AjiI CACGTC 1 cut(s) 453
AjnI CCWGG 5 cut(s) 258, 297, 420, 1024, 1218
AjuI GAANNNNNNNTTGG 4 cut(s) 755, 787, 895, 927
Alw21I GWGCWC 3 cut(s) 433, 938, 1301
Alw26I GTCTC 3 cut(s) 10, 203, 1015
Alw44I GTGCAC 1 cut(s) 429
AlwNI CAGNNNCTG 3 cut(s) 134, 179, 409
Ama87I CYCGRG 1 cut(s) 1140
Aor13HI TCCGGA 2 cut(s) 12, 288
AoxI GGCC 9 cut(s) 25, 144, 261, 309, 358, 423, 563, 636, 1048
ApaLI GTGCAC 1 cut(s) 429
ApeKI GCWGC 5 cut(s) 128, 152, 173, 474, 1095
ApoI RAATTY 3 cut(s) 554, 592, 1184
AspLEI GCGC 1 cut(s) 399
AspS9I GGNCC 4 cut(s) 26, 309, 424, 563
AsuC2I CCSGG 3 cut(s) 506, 1141, 1142
AsuHPI GGTGA 3 cut(s) 242, 346, 364
AvaI CYCGRG 1 cut(s) 1140
AxyI CCTNAGG 1 cut(s) 640
BaeGI GKGCMC 3 cut(s) 322, 433, 1168
BanII GRGCYC 3 cut(s) 779, 938, 1301
BbsI GAAGAC 2 cut(s) 53, 634
Bbv12I GWGCWC 3 cut(s) 433, 938, 1301
BbvCI CCTCAGC 1 cut(s) 180
BbvI GCAGC 5 cut(s) 140, 164, 185, 486, 1107
BccI CCATC 3 cut(s) 554, 639, 655
BceAI ACGGC 6 cut(s) 125, 217, 231, 251, 396, 672
BciT130I CCWGG 5 cut(s) 260, 299, 422, 1026, 1220
BciVI GTATCC 2 cut(s) 521, 748
BcnI CCSGG 3 cut(s) 506, 1141, 1142
BcoDI GTCTC 3 cut(s) 10, 203, 1015
BfaI CTAG 5 cut(s) 471, 1041, 1113, 1265, 1302
BfmI CTRYAG 1 cut(s) 951
BfrI CTTAAG 1 cut(s) 313
BfuI GTATCC 2 cut(s) 521, 748
BglI GCCNNNNNGGC 2 cut(s) 143, 317
BmcAI AGTACT 1 cut(s) 1076
Bme1390I CCNGG 8 cut(s) 260, 299, 422, 506, 1026, 1141, 1142, 1220
BmeT110I CYCGRG 1 cut(s) 1140
BmgBI CACGTC 1 cut(s) 453
BmgT120I GGNCC 4 cut(s) 26, 309, 424, 563
BmiI GGNNCC 1 cut(s) 778
BmrFI CCNGG 8 cut(s) 260, 299, 422, 506, 1026, 1141, 1142, 1220
BmsI GCATC 2 cut(s) 598, 682
BpiI GAAGAC 2 cut(s) 53, 634
BpmI CTGGAG 1 cut(s) 404
Bpu10I CCTNAGC 3 cut(s) 180, 392, 1146
BpuEI CTTGAG 1 cut(s) 66
BpuMI CCSGG 3 cut(s) 506, 1141, 1142
BsaHI GRCGYC 1 cut(s) 631
BsaI GGTCTC 1 cut(s) 1015
BsaJI CCNNGG 4 cut(s) 141, 147, 915, 1140
BsaWI WCCGGW 2 cut(s) 12, 288
BsaXI ACNNNNNCTCC 2 cut(s) 761, 791
Bsc4I CCNNNNNNNGG 7 cut(s) 259, 432, 433, 645, 751, 773, 1147
Bse118I RCCGGY 2 cut(s) 970, 1103
Bse1I ACTGG 4 cut(s) 233, 336, 414, 615
Bse21I CCTNAGG 1 cut(s) 640
Bse3DI GCAATG 1 cut(s) 569
BseAI TCCGGA 2 cut(s) 12, 288
BseBI CCWGG 5 cut(s) 260, 299, 422, 1026, 1220
BseDI CCNNGG 4 cut(s) 141, 147, 915, 1140
BseGI GGATG 5 cut(s) 613, 650, 666, 681, 1136
BseLI CCNNNNNNNGG 7 cut(s) 259, 432, 433, 645, 751, 773, 1147
BseMI GCAATG 1 cut(s) 569
BseMII CTCAG 5 cut(s) 171, 406, 654, 695, 1286
BseNI ACTGG 4 cut(s) 233, 336, 414, 615
BseSI GKGCMC 3 cut(s) 322, 433, 1168
BseXI GCAGC 5 cut(s) 140, 164, 185, 486, 1107
BsgI GTGCAG 1 cut(s) 969
Bsh1236I CGCG 1 cut(s) 161
BshFI GGCC 9 cut(s) 27, 146, 263, 311, 360, 425, 565, 638, 1050
BsiHKAI GWGCWC 3 cut(s) 433, 938, 1301
BsiHKCI CYCGRG 1 cut(s) 1140
BsiSI CCGG 6 cut(s) 13, 289, 506, 971, 1104, 1141
BslI CCNNNNNNNGG 7 cut(s) 259, 432, 433, 645, 751, 773, 1147
BsmAI GTCTC 3 cut(s) 10, 203, 1015
BsnI GGCC 9 cut(s) 27, 146, 263, 311, 360, 425, 565, 638, 1050
Bso31I GGTCTC 1 cut(s) 1015
BsoBI CYCGRG 1 cut(s) 1140
Bsp1286I GDGCHC 6 cut(s) 322, 433, 779, 938, 1168, 1301
Bsp13I TCCGGA 2 cut(s) 12, 288
Bsp143I GATC 1 cut(s) 652
Bsp19I CCATGG 1 cut(s) 915
BspANI GGCC 9 cut(s) 27, 146, 263, 311, 360, 425, 565, 638, 1050
BspCNI CTCAG 5 cut(s) 172, 405, 653, 696, 1287
BspEI TCCGGA 2 cut(s) 12, 288
BspFNI CGCG 1 cut(s) 161
BspLI GGNNCC 1 cut(s) 778
BspTI CTTAAG 1 cut(s) 313
BspTNI GGTCTC 1 cut(s) 1015
BsrDI GCAATG 1 cut(s) 569
BsrFI RCCGGY 2 cut(s) 970, 1103
BsrI ACTGG 4 cut(s) 233, 336, 414, 615
BssAI RCCGGY 2 cut(s) 970, 1103
BssECI CCNNGG 4 cut(s) 141, 147, 915, 1140
BssMI GATC 1 cut(s) 652
BssNI GRCGYC 1 cut(s) 631
BssT1I CCWWGG 1 cut(s) 915
Bst2UI CCWGG 5 cut(s) 260, 299, 422, 1026, 1220
Bst4CI ACNGT 4 cut(s) 279, 539, 839, 1323
Bst6I CTCTTC 3 cut(s) 26, 572, 1039
BstACI GRCGYC 1 cut(s) 631
BstAFI CTTAAG 1 cut(s) 313
BstAPI GCANNNNNTGC 3 cut(s) 134, 608, 1010
BstC8I GCNNGC 5 cut(s) 111, 230, 401, 717, 1237
BstDEI CTNAG 6 cut(s) 180, 392, 640, 704, 1146, 1295
BstDSI CCRYGG 2 cut(s) 141, 915
BstEII GGTNACC 1 cut(s) 1106
BstF5I GGATG 5 cut(s) 613, 650, 666, 681, 1136
BstFNI CGCG 1 cut(s) 161
BstHHI GCGC 1 cut(s) 399
BstKTI GATC 1 cut(s) 655
BstMAI GTCTC 3 cut(s) 10, 203, 1015
BstMBI GATC 1 cut(s) 652
BstNI CCWGG 5 cut(s) 260, 299, 422, 1026, 1220
BstNSI RCATGY 4 cut(s) 391, 403, 818, 1245
BstPI GGTNACC 1 cut(s) 1106
BstSCI CCNGG 8 cut(s) 258, 297, 420, 504, 1024, 1139, 1140, 1218
BstSFI CTRYAG 1 cut(s) 951
BstSLI GKGCMC 3 cut(s) 322, 433, 1168
BstUI CGCG 1 cut(s) 161
BstV1I GCAGC 5 cut(s) 140, 164, 185, 486, 1107
BstV2I GAAGAC 2 cut(s) 53, 634
BstXI CCANNNNNNTGG 1 cut(s) 619
Bsu36I CCTNAGG 1 cut(s) 640
BsuI GTATCC 2 cut(s) 521, 748
BsuRI GGCC 9 cut(s) 27, 146, 263, 311, 360, 425, 565, 638, 1050
BtgI CCRYGG 2 cut(s) 141, 915
BtrI CACGTC 1 cut(s) 453
BtsCI GGATG 5 cut(s) 613, 650, 666, 681, 1136
BtsIMutI CAGTG 3 cut(s) 329, 407, 701
Cac8I GCNNGC 5 cut(s) 111, 230, 401, 717, 1237
CaiI CAGNNNCTG 3 cut(s) 134, 179, 409
CfoI GCGC 1 cut(s) 399
Cfr10I RCCGGY 2 cut(s) 970, 1103
Cfr13I GGNCC 4 cut(s) 26, 309, 424, 563
Cfr9I CCCGGG 1 cut(s) 1140
Csp6I GTAC 3 cut(s) 464, 968, 1075
CspCI CAANNNNNGTGG 2 cut(s) 102, 137
CviAII CATG 8 cut(s) 170, 388, 400, 815, 916, 1080, 1120, 1242
CviQI GTAC 3 cut(s) 464, 968, 1075
DdeI CTNAG 6 cut(s) 180, 392, 640, 704, 1146, 1295
DpnI GATC 1 cut(s) 654
DpnII GATC 1 cut(s) 652
DraIII CACNNNGTG 2 cut(s) 367, 1163
EaeI YGGCCR 2 cut(s) 144, 261
Eam1104I CTCTTC 3 cut(s) 26, 572, 1039
EarI CTCTTC 3 cut(s) 26, 572, 1039
EciI GGCGGA 2 cut(s) 398, 674
Ecl136II GAGCTC 2 cut(s) 936, 1299
Eco130I CCWWGG 1 cut(s) 915
Eco24I GRGCYC 3 cut(s) 779, 938, 1301
Eco31I GGTCTC 1 cut(s) 1015
Eco53kI GAGCTC 2 cut(s) 936, 1299
Eco57I CTGAAG 2 cut(s) 57, 596
Eco81I CCTNAGG 1 cut(s) 640
Eco88I CYCGRG 1 cut(s) 1140
Eco91I GGTNACC 1 cut(s) 1106
EcoICRI GAGCTC 2 cut(s) 936, 1299
EcoO109I RGGNCCY 1 cut(s) 309
EcoO65I GGTNACC 1 cut(s) 1106
EcoRII CCWGG 5 cut(s) 258, 297, 420, 1024, 1218
EcoT14I CCWWGG 1 cut(s) 915
EcoT38I GRGCYC 3 cut(s) 779, 938, 1301
ErhI CCWWGG 1 cut(s) 915
FaeI CATG 8 cut(s) 173, 391, 403, 818, 919, 1083, 1123, 1245
FalI AAGNNNNNCTT 2 cut(s) 895, 927
FatI CATG 8 cut(s) 169, 387, 399, 814, 915, 1079, 1119, 1241
FokI GGATG 5 cut(s) 620, 657, 668, 673, 1123
FriOI GRGCYC 3 cut(s) 779, 938, 1301
FspBI CTAG 5 cut(s) 471, 1041, 1113, 1265, 1302
GlaI GCGC 1 cut(s) 398
GsuI CTGGAG 1 cut(s) 404
HaeIII GGCC 9 cut(s) 27, 146, 263, 311, 360, 425, 565, 638, 1050
HapII CCGG 6 cut(s) 13, 289, 506, 971, 1104, 1141
HhaI GCGC 1 cut(s) 399
Hin1I GRCGYC 1 cut(s) 631
Hin1II CATG 8 cut(s) 173, 391, 403, 818, 919, 1083, 1123, 1245
Hin6I GCGC 1 cut(s) 397
HinP1I GCGC 1 cut(s) 397
HincII GTYRAC 1 cut(s) 736
HindII GTYRAC 1 cut(s) 736
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 8 cut(s) 18, 98, 240, 417, 458, 860, 898, 1133
HpaII CCGG 6 cut(s) 13, 289, 506, 971, 1104, 1141
HphI GGTGA 3 cut(s) 242, 346, 364
Hpy166II GTNNAC 2 cut(s) 431, 736
Hpy188I TCNGA 4 cut(s) 457, 829, 1249, 1296
Hpy188III TCNNGA 9 cut(s) 13, 83, 289, 515, 620, 642, 1020, 1265, 1279
Hpy8I GTNNAC 2 cut(s) 431, 736
HpyAV CCTTC 2 cut(s) 576, 724
HpyCH4III ACNGT 4 cut(s) 279, 539, 839, 1323
HpyCH4IV ACGT 3 cut(s) 222, 452, 631
HpyCH4V TGCA 5 cut(s) 173, 403, 431, 715, 986
HpyF3I CTNAG 6 cut(s) 180, 392, 640, 704, 1146, 1295
HpySE526I ACGT 3 cut(s) 222, 452, 631
Hsp92I GRCGYC 1 cut(s) 631
Hsp92II CATG 8 cut(s) 173, 391, 403, 818, 919, 1083, 1123, 1245
HspAI GCGC 1 cut(s) 397
Kpn2I TCCGGA 2 cut(s) 12, 288
Kzo9I GATC 1 cut(s) 652
LmnI GCTCC 2 cut(s) 782, 1068
Lsp1109I GCAGC 5 cut(s) 140, 164, 185, 486, 1107
LweI GCATC 2 cut(s) 598, 682
MaeI CTAG 5 cut(s) 471, 1041, 1113, 1265, 1302
MaeII ACGT 3 cut(s) 222, 452, 631
MaeIII GTNAC 3 cut(s) 248, 1106, 1155
MalI GATC 1 cut(s) 654
MboI GATC 1 cut(s) 652
MboII GAAGA 7 cut(s) 13, 58, 589, 639, 677, 903, 1056
MhlI GDGCHC 6 cut(s) 322, 433, 779, 938, 1168, 1301
MluCI AATT 4 cut(s) 554, 592, 832, 1184
MlyI GAGTC 4 cut(s) 12, 92, 249, 411
MmeI TCCRAC 1 cut(s) 126
MroI TCCGGA 2 cut(s) 12, 288
MseI TTAA 4 cut(s) 270, 314, 324, 977
MspA1I CMGCKG 1 cut(s) 176
MspCI CTTAAG 1 cut(s) 313
MspI CCGG 6 cut(s) 13, 289, 506, 971, 1104, 1141
MspR9I CCNGG 8 cut(s) 260, 299, 422, 506, 1026, 1141, 1142, 1220
MvaI CCWGG 5 cut(s) 260, 299, 422, 1026, 1220
MvnI CGCG 1 cut(s) 161
NciI CCSGG 3 cut(s) 506, 1141, 1142
NcoI CCATGG 1 cut(s) 915
NdeII GATC 1 cut(s) 652
NlaIII CATG 8 cut(s) 173, 391, 403, 818, 919, 1083, 1123, 1245
NlaIV GGNNCC 1 cut(s) 778
NmeAIII GCCGAG 1 cut(s) 172
NmuCI GTSAC 2 cut(s) 248, 1155
NspI RCATGY 4 cut(s) 391, 403, 818, 1245
PaeI GCATGC 1 cut(s) 403
PciI ACATGT 1 cut(s) 1241
PfeI GAWTC 4 cut(s) 458, 860, 898, 1133
PfoI TCCNGGA 2 cut(s) 504, 1218
PleI GAGTC 4 cut(s) 12, 92, 248, 411
PpsI GAGTC 4 cut(s) 12, 92, 248, 411
PscI ACATGT 1 cut(s) 1241
Psp124BI GAGCTC 2 cut(s) 938, 1301
Psp1406I AACGTT 1 cut(s) 222
Psp6I CCWGG 5 cut(s) 258, 297, 420, 1024, 1218
PspEI GGTNACC 1 cut(s) 1106
PspGI CCWGG 5 cut(s) 258, 297, 420, 1024, 1218
PspN4I GGNNCC 1 cut(s) 778
PspPI GGNCC 4 cut(s) 26, 309, 424, 563
PstNI CAGNNNCTG 3 cut(s) 134, 179, 409
RsaI GTAC 3 cut(s) 465, 969, 1076
RsaNI GTAC 3 cut(s) 464, 968, 1075
SacI GAGCTC 2 cut(s) 938, 1301
SaqAI TTAA 4 cut(s) 270, 314, 324, 977
Sau3AI GATC 1 cut(s) 652
Sau96I GGNCC 4 cut(s) 26, 309, 424, 563
ScaI AGTACT 1 cut(s) 1076
SchI GAGTC 4 cut(s) 12, 92, 249, 411
ScrFI CCNGG 8 cut(s) 260, 299, 422, 506, 1026, 1141, 1142, 1220
SduI GDGCHC 6 cut(s) 322, 433, 779, 938, 1168, 1301
SfaNI GCATC 2 cut(s) 598, 682
SfcI CTRYAG 1 cut(s) 951
SmaI CCCGGG 1 cut(s) 1142
SmlI CTYRAG 2 cut(s) 81, 313
SmoI CTYRAG 2 cut(s) 81, 313
SphI GCATGC 1 cut(s) 403
Sse9I AATT 4 cut(s) 554, 592, 832, 1184
SspMI CTAG 5 cut(s) 471, 1041, 1113, 1265, 1302
SstI GAGCTC 2 cut(s) 938, 1301
StyD4I CCNGG 8 cut(s) 258, 297, 420, 504, 1024, 1139, 1140, 1218
StyI CCWWGG 1 cut(s) 915
TaaI ACNGT 4 cut(s) 279, 539, 839, 1323
TaiI ACGT 3 cut(s) 225, 455, 634
TaqI TCGA 6 cut(s) 415, 858, 932, 1019, 1182, 1310
TaqII GACCGA 1 cut(s) 1143
TasI AATT 4 cut(s) 554, 592, 832, 1184
TatI WGTACW 2 cut(s) 463, 1074
TauI GCSGC 6 cut(s) 128, 140, 164, 167, 179, 266
TfiI GAWTC 4 cut(s) 458, 860, 898, 1133
Tru1I TTAA 4 cut(s) 270, 314, 324, 977
Tru9I TTAA 4 cut(s) 270, 314, 324, 977
TscAI CASTG 3 cut(s) 336, 414, 708
TseFI GTSAC 2 cut(s) 248, 1155
TseI GCWGC 5 cut(s) 128, 152, 173, 474, 1095
Tsp45I GTSAC 2 cut(s) 248, 1155
TspDTI ATGAA 4 cut(s) 558, 687, 956, 978
TspGWI ACGGA 2 cut(s) 1145, 1204
TspMI CCCGGG 1 cut(s) 1140
TspRI CASTG 3 cut(s) 336, 414, 708
Vha464I CTTAAG 1 cut(s) 313
VneI GTGCAC 1 cut(s) 429
XapI RAATTY 3 cut(s) 554, 592, 1184
XbaI TCTAGA 1 cut(s) 1264
XceI RCATGY 4 cut(s) 391, 403, 818, 1245
XmaI CCCGGG 1 cut(s) 1140
XspI CTAG 5 cut(s) 471, 1041, 1113, 1265, 1302
ZraI GACGTC 1 cut(s) 632
ZrmI AGTACT 1 cut(s) 1076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.