Rorug01G0398900

Protein of unknown function (DUF4005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0009886
Physical Location & Seq
Reverse (-)
50741887 .. 50742454
568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0398900.1

Sequence Viewer

Length: 432 bp
ATGGGCGGAAATGGAACTTCACCGTGCGCCTCTTGCAAGTTGCTGAGACGCCGATGCGCCCAAGACTGCATTTTTGCCCCTTACTTTCCCTCCGATGACCCCCACAAGTTCGCCATCGTGCACAAAGTCTTTGGTGCTAGCAATGTTAGCAAGATGTTACAGGAGCTTCCAGTTCACCAGAGAACAGATGCAGTGAGCAGTCTAGTGTATGAAGCCAATGCAAGAGTGAGGGACCCAGTGTATGGGATTGTTGGGGCCATTTGTTGCCTGCAAAACCAAGTCTCTGAGCTGCAAATGCAACTTGCTGGGGCTCAGGCCGAGATCCTTTGCATTCAGATGCAGCAAGAGCCTATGGTACTCCCTTCCCAGCAGATTGACACGTGCACAGACGATGAGAGGACATATTTTCTCAACAACAATCTCCCTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4005 IQ

Protein Analysis

143

Amino Acids

15.85

Weight (kDa)

5.5

Isoelectric Point (pI)

55.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 8 - 105 2.4e-41 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 242
AciI CCGC 1 cut(s) 6
AclWI GGATC 1 cut(s) 316
AcvI CACGTG 1 cut(s) 381
AcyI GRCGYC 1 cut(s) 49
AfaI GTAC 1 cut(s) 357
AfiI CCNNNNNNNGG 1 cut(s) 242
AflIII ACRYGT 1 cut(s) 378
AluBI AGCT 2 cut(s) 166, 289
AluI AGCT 2 cut(s) 166, 289
Alw21I GWGCWC 2 cut(s) 123, 386
Alw26I GTCTC 2 cut(s) 40, 286
Alw44I GTGCAC 2 cut(s) 119, 382
AlwI GGATC 1 cut(s) 316
AoxI GGCC 2 cut(s) 255, 315
ApaLI GTGCAC 2 cut(s) 119, 382
ApeKI GCWGC 2 cut(s) 289, 340
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
AspLEI GCGC 2 cut(s) 29, 59
AspS9I GGNCC 2 cut(s) 232, 255
AsuHPI GGTGA 2 cut(s) 12, 167
AsuNHI GCTAGC 1 cut(s) 137
AvaII GGWCC 1 cut(s) 232
BaeGI GKGCMC 2 cut(s) 123, 386
BanII GRGCYC 1 cut(s) 313
BbrPI CACGTG 1 cut(s) 381
Bbv12I GWGCWC 2 cut(s) 123, 386
BbvI GCAGC 2 cut(s) 276, 352
BccI CCATC 1 cut(s) 122
BcoDI GTCTC 2 cut(s) 40, 286
BfaI CTAG 2 cut(s) 138, 203
BisI GCNGC 2 cut(s) 290, 341
BlsI GCNGC 2 cut(s) 291, 342
Bme18I GGWCC 1 cut(s) 232
BmgT120I GGNCC 2 cut(s) 232, 255
BmiI GGNNCC 3 cut(s) 233, 234, 256
BmrI ACTGGG 1 cut(s) 230
BmsI GCATC 3 cut(s) 44, 178, 327
BmtI GCTAGC 1 cut(s) 141
BmuI ACTGGG 1 cut(s) 230
Bpu10I CCTNAGC 1 cut(s) 312
BsaAI YACGTR 1 cut(s) 381
BsaHI GRCGYC 1 cut(s) 49
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse1I ACTGG 2 cut(s) 170, 236
Bse3DI GCAATG 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 242
BseMI GCAATG 1 cut(s) 148
BseMII CTCAG 3 cut(s) 35, 276, 326
BseNI ACTGG 2 cut(s) 170, 236
BseSI GKGCMC 2 cut(s) 123, 386
BseXI GCAGC 2 cut(s) 276, 352
BseYI CCCAGC 2 cut(s) 305, 366
BshFI GGCC 2 cut(s) 257, 317
BsiHKAI GWGCWC 2 cut(s) 123, 386
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 1 cut(s) 242
BsmAI GTCTC 2 cut(s) 40, 286
BsmBI CGTCTC 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 245
BsmI GAATGC 1 cut(s) 330
BsnI GGCC 2 cut(s) 257, 317
Bsp1286I GDGCHC 3 cut(s) 123, 313, 386
Bsp143I GATC 1 cut(s) 321
BspACI CCGC 1 cut(s) 6
BspANI GGCC 2 cut(s) 257, 317
BspCNI CTCAG 3 cut(s) 36, 277, 325
BspLI GGNNCC 3 cut(s) 233, 234, 256
BspOI GCTAGC 1 cut(s) 141
BspPI GGATC 1 cut(s) 316
BsrDI GCAATG 1 cut(s) 148
BsrI ACTGG 2 cut(s) 170, 236
BssMI GATC 1 cut(s) 321
BssNI GRCGYC 1 cut(s) 49
Bst4CI ACNGT 1 cut(s) 24
BstACI GRCGYC 1 cut(s) 49
BstBAI YACGTR 1 cut(s) 381
BstC8I GCNNGC 2 cut(s) 139, 269
BstDEI CTNAG 4 cut(s) 44, 285, 312, 426
BstHHI GCGC 2 cut(s) 29, 59
BstKTI GATC 1 cut(s) 324
BstMAI GTCTC 2 cut(s) 40, 286
BstMBI GATC 1 cut(s) 321
BstMWI GCNNNNNNNGC 4 cut(s) 33, 147, 295, 346
BstSLI GKGCMC 2 cut(s) 123, 386
BstV1I GCAGC 2 cut(s) 276, 352
BstX2I RGATCY 1 cut(s) 321
BstYI RGATCY 1 cut(s) 321
BsuRI GGCC 2 cut(s) 257, 317
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 2 cut(s) 198, 243
Cac8I GCNNGC 2 cut(s) 139, 269
CfoI GCGC 2 cut(s) 29, 59
Cfr13I GGNCC 2 cut(s) 232, 255
CseI GACGC 1 cut(s) 57
Csp6I GTAC 1 cut(s) 356
CviJI RGCY 7 cut(s) 166, 215, 257, 289, 311, 317, 349
CviKI_1 RGCY 7 cut(s) 166, 215, 257, 289, 311, 317, 349
CviQI GTAC 1 cut(s) 356
DdeI CTNAG 4 cut(s) 44, 285, 312, 426
DpnI GATC 1 cut(s) 323
DpnII GATC 1 cut(s) 321
EciI GGCGGA 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 313
Eco47I GGWCC 1 cut(s) 232
Eco72I CACGTG 1 cut(s) 381
EcoO109I RGGNCCY 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 313
Esp3I CGTCTC 1 cut(s) 40
FaiI YATR 4 cut(s) 210, 243, 353, 403
FaqI GGGAC 1 cut(s) 245
Fnu4HI GCNGC 2 cut(s) 290, 341
FriOI GRGCYC 1 cut(s) 313
Fsp4HI GCNGC 2 cut(s) 290, 341
FspBI CTAG 2 cut(s) 138, 203
GlaI GCGC 2 cut(s) 28, 58
GluI GCNGC 2 cut(s) 290, 341
GsaI CCCAGC 2 cut(s) 309, 370
HaeIII GGCC 2 cut(s) 257, 317
HgaI GACGC 1 cut(s) 57
HhaI GCGC 2 cut(s) 29, 59
Hin1I GRCGYC 1 cut(s) 49
Hin6I GCGC 2 cut(s) 27, 57
HinP1I GCGC 2 cut(s) 27, 57
HphI GGTGA 2 cut(s) 12, 167
Hpy166II GTNNAC 3 cut(s) 121, 175, 384
Hpy188I TCNGA 3 cut(s) 94, 286, 336
Hpy8I GTNNAC 3 cut(s) 121, 175, 384
HpyAV CCTTC 1 cut(s) 372
HpyCH4III ACNGT 1 cut(s) 24
HpyCH4IV ACGT 1 cut(s) 380
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 147, 295, 346
HpyF3I CTNAG 4 cut(s) 44, 285, 312, 426
HpySE526I ACGT 1 cut(s) 380
Hsp92I GRCGYC 1 cut(s) 49
HspAI GCGC 2 cut(s) 27, 57
KflI GGGWCCC 1 cut(s) 232
Kzo9I GATC 1 cut(s) 321
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 8 cut(s) 146, 183, 191, 249, 281, 291, 299, 380
Lsp1109I GCAGC 2 cut(s) 276, 352
LweI GCATC 3 cut(s) 44, 178, 327
MaeI CTAG 2 cut(s) 138, 203
MaeII ACGT 1 cut(s) 380
MaeIII GTNAC 1 cut(s) 156
MalI GATC 1 cut(s) 323
MboI GATC 1 cut(s) 321
MflI RGATCY 1 cut(s) 321
MhlI GDGCHC 3 cut(s) 123, 313, 386
MnlI CCTC 4 cut(s) 40, 100, 222, 390
MslI CAYNNNNRTG 1 cut(s) 335
Mva1269I GAATGC 1 cut(s) 330
MwoI GCNNNNNNNGC 4 cut(s) 33, 147, 295, 346
NdeII GATC 1 cut(s) 321
NheI GCTAGC 1 cut(s) 137
NlaIV GGNNCC 3 cut(s) 233, 234, 256
NmeAIII GCCGAG 1 cut(s) 343
PctI GAATGC 1 cut(s) 330
PflMI CCANNNNNTGG 1 cut(s) 242
PkrI GCNGC 2 cut(s) 291, 342
PmaCI CACGTG 1 cut(s) 381
PmlI CACGTG 1 cut(s) 381
Ppu21I YACGTR 1 cut(s) 381
PpuMI RGGWCCY 1 cut(s) 232
Psp5II RGGWCCY 1 cut(s) 232
PspCI CACGTG 1 cut(s) 381
PspFI CCCAGC 2 cut(s) 305, 366
PspN4I GGNNCC 3 cut(s) 233, 234, 256
PspPI GGNCC 2 cut(s) 232, 255
PspPPI RGGWCCY 1 cut(s) 232
PsuI RGATCY 1 cut(s) 321
RsaI GTAC 1 cut(s) 357
RsaNI GTAC 1 cut(s) 356
RseI CAYNNNNRTG 1 cut(s) 335
SatI GCNGC 2 cut(s) 290, 341
Sau3AI GATC 1 cut(s) 321
Sau96I GGNCC 2 cut(s) 232, 255
SduI GDGCHC 3 cut(s) 123, 313, 386
SetI ASST 3 cut(s) 168, 291, 383
SfaNI GCATC 3 cut(s) 44, 178, 327
SinI GGWCC 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 335
SsiI CCGC 1 cut(s) 6
SspMI CTAG 2 cut(s) 138, 203
TaaI ACNGT 1 cut(s) 24
TaiI ACGT 1 cut(s) 383
TscAI CASTG 2 cut(s) 198, 243
TseI GCWGC 2 cut(s) 289, 340
TspDTI ATGAA 1 cut(s) 225
TspRI CASTG 2 cut(s) 198, 243
Van91I CCANNNNNTGG 1 cut(s) 242
VneI GTGCAC 2 cut(s) 119, 382
VpaK11BI GGWCC 1 cut(s) 232
XspI CTAG 2 cut(s) 138, 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.