Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002113.1

Orthogroup ID

OG0009886

Physical Location & Seq

Genomic Coordinates Reverse (-)

25469 .. 26280

Gene Structure 812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002113.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atgggctttttccggcgactcttcggcccgaaaaagcccaaaaagaagactaacaaagccgaagcctccacttcagcttctcaagaatggggcttggactccaacaagcacgcaatagcggtggcggcagctactgccgccgtggccgaggcagctctcgcggcggctcatgctgcagcggaggtcgtcaggctcactaacggcgttgagacttcggggaacgttagcttgccagttagagtcagccgtcaccgccacctggccgccgttaagatacagtcagctttccggagatacctggttgtgtcagagtctgggagaagaaattctctgcttgaatctgtgttcctaacaagaaggttactttggtactttctggacatggatttccaaccttccaatgccacattgcagaggaaggacaaagatgtcaatttgcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

147

Amino Acids

16.22

Weight (kDa)

10.58

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07240 AT5G07240 AT5G62070
fragaria_vesca	FvH4_7g29094
malus_domestica	MD01G1197700.v1.1 MD07G1265200.v1.1
prunus_persica	Prupe.2G291100_v2.0.a1
pyrus_communis	pycom01g20790 pycom07g24360
rosa_chinensis	RchiOBHm_Chr1g0376831
rosa_laevigata	RLG00000026566
rosa_multiflora	Rmu_co8362177.1_g000001 Rmu_sc0002113.1_g000005
rosa_roxburghii	Rroxscaffold_4G00281690
rosa_rugosa	Rorug01G0398800 Rorug01G0398900
rosa_samantha	Rh1AG416100 Rh1BG375500 Rh1CG389300 Rh1DG406100
rosa_wichuraiana	Rw1G036500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	428
AccII	CGCG	1 cut(s)	161
AccIII	TCCGGA	1 cut(s)	288
AciI	CCGC	8 cut(s)	119, 125, 138, 161, 164, 179, 253, 264
AclI	AACGTT	1 cut(s)	222
AcoI	YGGCCR	2 cut(s)	144, 261
AcsI	RAATTY	1 cut(s)	325
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	1 cut(s)	259
AgsI	TTSAA	1 cut(s)	338
AjnI	CCWGG	2 cut(s)	258, 297
AjuI	GAANNNNNNNTTGG	2 cut(s)	349, 381
AluBI	AGCT	5 cut(s)	77, 131, 155, 228, 284
AluI	AGCT	5 cut(s)	77, 131, 155, 228, 284
Alw26I	GTCTC	1 cut(s)	203
AlwNI	CAGNNNCTG	2 cut(s)	134, 314
Aor13HI	TCCGGA	1 cut(s)	288
AoxI	GGCC	3 cut(s)	25, 144, 261
ApeKI	GCWGC	4 cut(s)	128, 152, 173, 176
ApoI	RAATTY	1 cut(s)	325
Asp700I	GAANNNNTTC	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	53
BbvI	GCAGC	4 cut(s)	140, 160, 164, 188
BceAI	ACGGC	4 cut(s)	125, 217, 231, 251
BciT130I	CCWGG	2 cut(s)	260, 299
BcoDI	GTCTC	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	174
BglI	GCCNNNNNGGC	1 cut(s)	143
BisI	GCNGC	9 cut(s)	126, 129, 138, 153, 162, 165, 174, 177, 264
BlsI	GCNGC	9 cut(s)	127, 130, 139, 154, 163, 166, 175, 178, 265
Bme1390I	CCNGG	2 cut(s)	260, 299
BmgT120I	GGNCC	1 cut(s)	26
BmrFI	CCNGG	2 cut(s)	260, 299
BpiI	GAAGAC	1 cut(s)	53
BpuEI	CTTGAG	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	141, 147
BsaWI	WCCGGW	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse1I	ACTGG	1 cut(s)	233
Bse3DI	GCAATG	1 cut(s)	407
BseAI	TCCGGA	1 cut(s)	288
BseBI	CCWGG	2 cut(s)	260, 299
BseDI	CCNNGG	2 cut(s)	141, 147
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMI	GCAATG	1 cut(s)	407
BseNI	ACTGG	1 cut(s)	233
BseXI	GCAGC	4 cut(s)	140, 160, 164, 188
Bsh1236I	CGCG	1 cut(s)	161
BshFI	GGCC	3 cut(s)	27, 146, 263
BsiSI	CCGG	2 cut(s)	13, 289
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	1 cut(s)	203
BsnI	GGCC	3 cut(s)	27, 146, 263
Bsp13I	TCCGGA	1 cut(s)	288
BspACI	CCGC	8 cut(s)	119, 125, 138, 161, 164, 179, 253, 264
BspANI	GGCC	3 cut(s)	27, 146, 263
BspEI	TCCGGA	1 cut(s)	288
BspFNI	CGCG	1 cut(s)	161
BspMAI	CTGCAG	1 cut(s)	178
BsrDI	GCAATG	1 cut(s)	407
BsrI	ACTGG	1 cut(s)	233
BssECI	CCNNGG	2 cut(s)	141, 147
Bst2UI	CCWGG	2 cut(s)	260, 299
Bst4CI	ACNGT	1 cut(s)	279
Bst6I	CTCTTC	1 cut(s)	26
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstC8I	GCNNGC	2 cut(s)	111, 230
BstDSI	CCRYGG	1 cut(s)	141
BstFNI	CGCG	1 cut(s)	161
BstMAI	GTCTC	1 cut(s)	203
BstNI	CCWGG	2 cut(s)	260, 299
BstSCI	CCNGG	2 cut(s)	258, 297
BstSFI	CTRYAG	1 cut(s)	174
BstUI	CGCG	1 cut(s)	161
BstV1I	GCAGC	4 cut(s)	140, 160, 164, 188
BstV2I	GAAGAC	1 cut(s)	53
BsuRI	GGCC	3 cut(s)	27, 146, 263
BtgI	CCRYGG	1 cut(s)	141
Cac8I	GCNNGC	2 cut(s)	111, 230
CaiI	CAGNNNCTG	2 cut(s)	134, 314
Cfr13I	GGNCC	1 cut(s)	26
CsiI	ACCWGGT	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	370
CspCI	CAANNNNNGTGG	2 cut(s)	102, 137
CviAII	CATG	2 cut(s)	170, 382
CviQI	GTAC	1 cut(s)	370
DrdI	GACNNNNNNGTC	1 cut(s)	428
DseDI	GACNNNNNNGTC	1 cut(s)	428
EaeI	YGGCCR	2 cut(s)	144, 261
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco57I	CTGAAG	1 cut(s)	57
EcoRII	CCWGG	2 cut(s)	258, 297
FaeI	CATG	2 cut(s)	173, 385
FaiI	YATR	2 cut(s)	171, 383
FatI	CATG	2 cut(s)	169, 381
Fnu4HI	GCNGC	9 cut(s)	126, 129, 138, 153, 162, 165, 174, 177, 264
Fsp4HI	GCNGC	9 cut(s)	126, 129, 138, 153, 162, 165, 174, 177, 264
GluI	GCNGC	9 cut(s)	126, 129, 138, 153, 162, 165, 174, 177, 264
HaeIII	GGCC	3 cut(s)	27, 146, 263
HapII	CCGG	2 cut(s)	13, 289
Hin1II	CATG	2 cut(s)	173, 385
HinfI	GANTC	5 cut(s)	18, 98, 240, 311, 338
HpaII	CCGG	2 cut(s)	13, 289
HphI	GGTGA	1 cut(s)	242
Hpy188I	TCNGA	1 cut(s)	310
Hpy188III	TCNNGA	3 cut(s)	83, 289, 377
HpyAV	CCTTC	3 cut(s)	351, 405, 412
HpyCH4III	ACNGT	1 cut(s)	279
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	3 cut(s)	176, 412, 439
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	2 cut(s)	173, 385
Kpn2I	TCCGGA	1 cut(s)	288
Lsp1109I	GCAGC	4 cut(s)	140, 160, 164, 188
MabI	ACCWGGT	1 cut(s)	297
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	2 cut(s)	248, 360
MboII	GAAGA	3 cut(s)	13, 58, 333
MluCI	AATT	2 cut(s)	325, 433
MlyI	GAGTC	4 cut(s)	12, 92, 249, 320
MmeI	TCCRAC	2 cut(s)	126, 415
MnlI	CCTC	4 cut(s)	76, 142, 175, 408
MroI	TCCGGA	1 cut(s)	288
MroXI	GAANNNNTTC	1 cut(s)	325
MseI	TTAA	1 cut(s)	270
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	2 cut(s)	13, 289
MspR9I	CCNGG	2 cut(s)	260, 299
MvaI	CCWGG	2 cut(s)	260, 299
MvnI	CGCG	1 cut(s)	161
NlaIII	CATG	2 cut(s)	173, 385
NmeAIII	GCCGAG	1 cut(s)	172
NmuCI	GTSAC	1 cut(s)	248
PdmI	GAANNNNTTC	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	338
PkrI	GCNGC	9 cut(s)	127, 130, 139, 154, 163, 166, 175, 178, 265
PleI	GAGTC	4 cut(s)	12, 92, 248, 319
PpsI	GAGTC	4 cut(s)	12, 92, 248, 319
Psp1406I	AACGTT	1 cut(s)	222
Psp6I	CCWGG	2 cut(s)	258, 297
PspGI	CCWGG	2 cut(s)	258, 297
PspPI	GGNCC	1 cut(s)	26
PstI	CTGCAG	1 cut(s)	178
PstNI	CAGNNNCTG	2 cut(s)	134, 314
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	9 cut(s)	126, 129, 138, 153, 162, 165, 174, 177, 264
Sau96I	GGNCC	1 cut(s)	26
SchI	GAGTC	4 cut(s)	12, 92, 249, 320
ScrFI	CCNGG	2 cut(s)	260, 299
SexAI	ACCWGGT	1 cut(s)	297
SfcI	CTRYAG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
Sse9I	AATT	2 cut(s)	325, 433
SsiI	CCGC	8 cut(s)	119, 125, 138, 161, 164, 179, 253, 264
StyD4I	CCNGG	2 cut(s)	258, 297
TaaI	ACNGT	1 cut(s)	279
TaiI	ACGT	1 cut(s)	225
TasI	AATT	2 cut(s)	325, 433
TauI	GCSGC	5 cut(s)	128, 140, 164, 167, 266
TfiI	GAWTC	1 cut(s)	338
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	4 cut(s)	128, 152, 173, 176
Tsp45I	GTSAC	1 cut(s)	248
XapI	RAATTY	1 cut(s)	325
XmnI	GAANNNNTTC	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.