AT5G07475

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013317
Physical Location & Seq
Reverse (-)
2364706 .. 2365605
900 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G07475.1

Sequence Viewer

Length: 579 bp
ATGAAGAAGACGTCGAAGATACAATTTCTTTTCAATCTCTGCATCATATTTGGGGTTGTAGTAATAAGAAGATGTAACGCAACGACATACTTTGTAGGAGACAGCTCCGGTTGGGACATAAGCTCCGATCTCGAGTCTTGGACTTCAGGCAAGCGATTCTCTCCTGGTGATGTTCTAATGTTCCAATACTCATCGACGCATAGTGTATACGAAGTGGCTAAAGACAACTACCAAAATTGCAACACAACAGATGCGATCCGGACGTTCACAAACGGGAACACGACCGTTGCTCTTTCCAAACCGGGAAACCGGTTCTTTGTATGCGGTAATAGGCTCCATTGCTTCGCCGGTATGAGGTTACTAGTCAATGTTGAAGGCAATGGCCCATCTCAGGCTCCCGTGGGATCTCCCCAAGCCGCCACTTCAGGGATTCTTCAACCATCTTCTAAAAAGAATAACCCTGCGACCGGAGTCGCTAGCTCAGCCGCCCGTTTTGTTGGCGACAGCGGTTGGAGGGGTACCATGGGAATTTTTGTATATTTTATGGTTTTTGCTTTTCCATTCATATGGTTTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

192

Amino Acids

21.01

Weight (kDa)

9.28

Isoelectric Point (pI)

28.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 39 - 118 7.6e-24 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07475
fragaria_vesca FvH4_7g26810
malus_domestica MD01G1176400.v1.1 MD07G1247200.v1.1
prunus_persica Prupe.2G271300_v2.0.a1
pyrus_communis pycom01g18700 pycom07g22130
rosa_chinensis RchiOBHm_Chr1g0373501
rosa_laevigata RLG00000026821
rosa_multiflora Rmu_co8415803.1_g000001 Rmu_sc0028247.1_g000003
rosa_roxburghii Rroxscaffold_4G00284200
rosa_rugosa Rorug01G0377700
rosa_samantha Rh1AG387000 Rh1BG351300 Rh1CG364100 Rh1DG381800
rosa_wichuraiana Rw1G034830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 14
Acc65I GGTACC 1 cut(s) 518
AccB1I GGYRCC 1 cut(s) 518
AccI GTMKAC 1 cut(s) 207
AccIII TCCGGA 1 cut(s) 258
AciI CCGC 4 cut(s) 324, 417, 486, 507
AclWI GGATC 2 cut(s) 250, 412
AcsI RAATTY 1 cut(s) 528
AcuI CTGAAG 2 cut(s) 129, 408
AcyI GRCGYC 1 cut(s) 11
AfaI GTAC 1 cut(s) 520
AfiI CCNNNNNNNGG 4 cut(s) 354, 391, 426, 467
AgeI ACCGGT 1 cut(s) 309
AgsI TTSAA 3 cut(s) 34, 374, 437
AhlI ACTAGT 1 cut(s) 361
AjnI CCWGG 1 cut(s) 163
AluBI AGCT 3 cut(s) 105, 123, 480
AluI AGCT 3 cut(s) 105, 123, 480
Alw26I GTCTC 1 cut(s) 93
AlwI GGATC 2 cut(s) 250, 412
Ama87I CYCGRG 1 cut(s) 131
Aor13HI TCCGGA 1 cut(s) 258
AoxI GGCC 1 cut(s) 382
ApoI RAATTY 1 cut(s) 528
AsiGI ACCGGT 1 cut(s) 309
Asp718I GGTACC 1 cut(s) 518
AspS9I GGNCC 1 cut(s) 383
AsuC2I CCSGG 1 cut(s) 303
AsuHPI GGTGA 1 cut(s) 179
AsuNHI GCTAGC 1 cut(s) 476
AvaI CYCGRG 1 cut(s) 131
BanI GGYRCC 1 cut(s) 518
BbsI GAAGAC 1 cut(s) 14
BccI CCATC 2 cut(s) 394, 448
BciT130I CCWGG 1 cut(s) 165
BcnI CCSGG 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 93
BcuI ACTAGT 1 cut(s) 361
BfaI CTAG 2 cut(s) 362, 477
BisI GCNGC 2 cut(s) 417, 486
BlpI GCTNAGC 1 cut(s) 481
BlsI GCNGC 2 cut(s) 418, 487
Bme1390I CCNGG 2 cut(s) 165, 303
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 383
BmiI GGNNCC 3 cut(s) 335, 396, 520
BmrFI CCNGG 2 cut(s) 165, 303
BmsI GCATC 2 cut(s) 51, 241
BmtI GCTAGC 1 cut(s) 480
BoxI GACNNNNGTC 1 cut(s) 470
BpiI GAAGAC 1 cut(s) 14
Bpu1102I GCTNAGC 1 cut(s) 481
BpuMI CCSGG 1 cut(s) 303
BsaHI GRCGYC 1 cut(s) 11
BsaJI CCNNGG 2 cut(s) 399, 522
BsaWI WCCGGW 4 cut(s) 107, 258, 309, 467
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 4 cut(s) 354, 391, 426, 467
Bse118I RCCGGY 2 cut(s) 309, 347
Bse3DI GCAATG 2 cut(s) 337, 385
BseAI TCCGGA 1 cut(s) 258
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 2 cut(s) 399, 522
BseLI CCNNNNNNNGG 4 cut(s) 354, 391, 426, 467
BseMI GCAATG 2 cut(s) 337, 385
BseMII CTCAG 2 cut(s) 404, 495
Bsh1285I CGRYCG 2 cut(s) 285, 468
BshFI GGCC 1 cut(s) 384
BshNI GGYRCC 1 cut(s) 518
BshTI ACCGGT 1 cut(s) 309
BsiEI CGRYCG 2 cut(s) 285, 468
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 6 cut(s) 108, 259, 302, 310, 348, 468
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 4 cut(s) 354, 391, 426, 467
BsmAI GTCTC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 128
BsnI GGCC 1 cut(s) 384
BsoBI CYCGRG 1 cut(s) 131
Bsp13I TCCGGA 1 cut(s) 258
Bsp143I GATC 3 cut(s) 127, 255, 404
Bsp1720I GCTNAGC 1 cut(s) 481
Bsp19I CCATGG 1 cut(s) 522
BspACI CCGC 4 cut(s) 324, 417, 486, 507
BspANI GGCC 1 cut(s) 384
BspCNI CTCAG 2 cut(s) 403, 494
BspEI TCCGGA 1 cut(s) 258
BspLI GGNNCC 3 cut(s) 335, 396, 520
BspOI GCTAGC 1 cut(s) 480
BspPI GGATC 2 cut(s) 250, 412
BspT107I GGYRCC 1 cut(s) 518
BsrDI GCAATG 2 cut(s) 337, 385
BsrFI RCCGGY 2 cut(s) 309, 347
BssAI RCCGGY 2 cut(s) 309, 347
BssECI CCNNGG 2 cut(s) 399, 522
BssMI GATC 3 cut(s) 127, 255, 404
BssNAI GTATAC 1 cut(s) 208
BssNI GRCGYC 1 cut(s) 11
BssT1I CCWWGG 1 cut(s) 522
Bst1107I GTATAC 1 cut(s) 208
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 286
BstACI GRCGYC 1 cut(s) 11
BstC8I GCNNGC 2 cut(s) 152, 478
BstDEI CTNAG 2 cut(s) 390, 481
BstDSI CCRYGG 2 cut(s) 399, 522
BstKTI GATC 3 cut(s) 130, 258, 407
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 3 cut(s) 127, 255, 404
BstMCI CGRYCG 2 cut(s) 285, 468
BstMWI GCNNNNNNNGC 1 cut(s) 482
BstNI CCWGG 1 cut(s) 165
BstPAI GACNNNNGTC 1 cut(s) 470
BstSCI CCNGG 2 cut(s) 163, 301
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 1 cut(s) 404
BstXI CCANNNNNNTGG 1 cut(s) 567
BstYI RGATCY 1 cut(s) 404
BstZ17I GTATAC 1 cut(s) 208
BsuRI GGCC 1 cut(s) 384
BtgI CCRYGG 2 cut(s) 399, 522
Cac8I GCNNGC 2 cut(s) 152, 478
Cfr10I RCCGGY 2 cut(s) 309, 347
Cfr13I GGNCC 1 cut(s) 383
CseI GACGC 1 cut(s) 205
Csp6I GTAC 1 cut(s) 519
CspAI ACCGGT 1 cut(s) 309
CviAII CATG 1 cut(s) 523
CviJI RGCY 9 cut(s) 105, 123, 218, 334, 384, 395, 416, 480, 485
CviKI_1 RGCY 9 cut(s) 105, 123, 218, 334, 384, 395, 416, 480, 485
CviQI GTAC 1 cut(s) 519
DdeI CTNAG 2 cut(s) 390, 481
DpnI GATC 3 cut(s) 129, 257, 406
DpnII GATC 3 cut(s) 127, 255, 404
Eco130I CCWWGG 1 cut(s) 522
Eco57I CTGAAG 2 cut(s) 129, 408
Eco88I CYCGRG 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 522
ErhI CCWWGG 1 cut(s) 522
FaeI CATG 1 cut(s) 526
FaqI GGGAC 1 cut(s) 128
FatI CATG 1 cut(s) 522
FauNDI CATATG 1 cut(s) 566
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 2 cut(s) 417, 486
Fsp4HI GCNGC 2 cut(s) 417, 486
FspBI CTAG 2 cut(s) 362, 477
GluI GCNGC 2 cut(s) 417, 486
HaeIII GGCC 1 cut(s) 384
HapII CCGG 6 cut(s) 108, 259, 302, 310, 348, 468
HgaI GACGC 1 cut(s) 205
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 1 cut(s) 526
HinfI GANTC 4 cut(s) 134, 156, 430, 471
HpaII CCGG 6 cut(s) 108, 259, 302, 310, 348, 468
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 2 cut(s) 208, 267
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 2 cut(s) 131, 259
Hpy8I GTNNAC 2 cut(s) 208, 267
Hpy99I CGWCG 2 cut(s) 16, 199
HpyAV CCTTC 1 cut(s) 368
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4IV ACGT 2 cut(s) 11, 263
HpyCH4V TGCA 2 cut(s) 42, 240
HpyF10VI GCNNNNNNNGC 1 cut(s) 482
HpyF3I CTNAG 2 cut(s) 390, 481
HpySE526I ACGT 2 cut(s) 11, 263
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 1 cut(s) 526
Kpn2I TCCGGA 1 cut(s) 258
KpnI GGTACC 1 cut(s) 522
Kzo9I GATC 3 cut(s) 127, 255, 404
LmnI GCTCC 4 cut(s) 110, 128, 339, 400
LweI GCATC 2 cut(s) 51, 241
MaeI CTAG 2 cut(s) 362, 477
MaeII ACGT 2 cut(s) 11, 263
MaeIII GTNAC 2 cut(s) 74, 357
MalI GATC 3 cut(s) 129, 257, 406
MboI GATC 3 cut(s) 127, 255, 404
MboII GAAGA 6 cut(s) 16, 19, 28, 81, 425, 435
MflI RGATCY 1 cut(s) 404
MluCI AATT 3 cut(s) 23, 235, 528
MlyI GAGTC 2 cut(s) 143, 480
MmeI TCCRAC 1 cut(s) 491
MnlI CCTC 2 cut(s) 348, 507
MroI TCCGGA 1 cut(s) 258
MslI CAYNNNNRTG 1 cut(s) 565
MspA1I CMGCKG 1 cut(s) 507
MspI CCGG 6 cut(s) 108, 259, 302, 310, 348, 468
MspR9I CCNGG 2 cut(s) 165, 303
MvaI CCWGG 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 482
NciI CCSGG 1 cut(s) 303
NcoI CCATGG 1 cut(s) 522
NdeI CATATG 1 cut(s) 566
NdeII GATC 3 cut(s) 127, 255, 404
NheI GCTAGC 1 cut(s) 476
NlaIII CATG 1 cut(s) 526
NlaIV GGNNCC 3 cut(s) 335, 396, 520
PaeR7I CTCGAG 1 cut(s) 131
PfeI GAWTC 2 cut(s) 156, 430
PinAI ACCGGT 1 cut(s) 309
PkrI GCNGC 2 cut(s) 418, 487
PleI GAGTC 2 cut(s) 142, 479
PpsI GAGTC 2 cut(s) 142, 479
PshAI GACNNNNGTC 1 cut(s) 470
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 3 cut(s) 335, 396, 520
PspPI GGNCC 1 cut(s) 383
PsuI RGATCY 1 cut(s) 404
RsaI GTAC 1 cut(s) 520
RsaNI GTAC 1 cut(s) 519
RseI CAYNNNNRTG 1 cut(s) 565
SatI GCNGC 2 cut(s) 417, 486
Sau3AI GATC 3 cut(s) 127, 255, 404
Sau96I GGNCC 1 cut(s) 383
SchI GAGTC 2 cut(s) 143, 480
ScrFI CCNGG 2 cut(s) 165, 303
SetI ASST 6 cut(s) 14, 107, 125, 266, 359, 482
SfaNI GCATC 2 cut(s) 51, 241
Sfr274I CTCGAG 1 cut(s) 131
SlaI CTCGAG 1 cut(s) 131
SmiMI CAYNNNNRTG 1 cut(s) 565
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SpeI ACTAGT 1 cut(s) 361
Sse9I AATT 3 cut(s) 23, 235, 528
SsiI CCGC 4 cut(s) 324, 417, 486, 507
SspMI CTAG 2 cut(s) 362, 477
StyD4I CCNGG 2 cut(s) 163, 301
StyI CCWWGG 1 cut(s) 522
TaaI ACNGT 1 cut(s) 286
TaiI ACGT 2 cut(s) 14, 266
TaqI TCGA 3 cut(s) 14, 132, 194
TasI AATT 3 cut(s) 23, 235, 528
TauI GCSGC 2 cut(s) 419, 488
TfiI GAWTC 2 cut(s) 156, 430
TspDTI ATGAA 2 cut(s) 17, 553
XapI RAATTY 1 cut(s) 528
XhoI CTCGAG 1 cut(s) 131
XmiI GTMKAC 1 cut(s) 207
XspI CTAG 2 cut(s) 362, 477
ZraI GACGTC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.