MD07G1247200.v1.1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0013317
Physical Location & Seq
Reverse (-)
31667737 .. 31668686
950 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1247200.v1.1.491

Sequence Viewer

Length: 372 bp
ATGGCAAAGCTGCCTCAAATTCTAGCTTGTGTTCTTGTTGTCCTTGGATTTGCATTAACAAGCTCCGCCTCAATTTACATAGTTGGGGGCAGCTCTGGCTGGGACGTAAGCACCGACCTCAATTCATGGTCCAGTGACAAGAAATTTAACGTTGGCGATGTTCTGTGGTTTCAGTACTCATCATCTAATAGTGTGAACCAAGTGACCAAAGAAAGCTTTGAGGTTTGCAACACAGCAAAAGTTATAGAAACTTATACAGGAGGAAACACAACAGTCACGTTGACAAAACCTGGTGGCTGGTATTTTGTGGATGGAAACAAGCTATATTGCTTGGGAGGAATGAAGCTCATGGCAGAAGTAGAAAACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

124

Amino Acids

13.3

Weight (kDa)

4.89

Isoelectric Point (pI)

29.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 114 1.1e-20 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07475
fragaria_vesca FvH4_7g26810
malus_domestica MD01G1176400.v1.1 MD07G1247200.v1.1
prunus_persica Prupe.2G271300_v2.0.a1
pyrus_communis pycom01g18700 pycom07g22130
rosa_chinensis RchiOBHm_Chr1g0373501
rosa_laevigata RLG00000026821
rosa_multiflora Rmu_co8415803.1_g000001 Rmu_sc0028247.1_g000003
rosa_roxburghii Rroxscaffold_4G00284200
rosa_rugosa Rorug01G0377700
rosa_samantha Rh1AG387000 Rh1BG351300 Rh1CG364100 Rh1DG381800
rosa_wichuraiana Rw1G034830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 66
AclI AACGTT 1 cut(s) 150
AcsI RAATTY 2 cut(s) 18, 143
AfaI GTAC 1 cut(s) 176
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 7 cut(s) 10, 26, 63, 93, 216, 322, 346
AluI AGCT 7 cut(s) 10, 26, 63, 93, 216, 322, 346
ApeKI GCWGC 2 cut(s) 10, 90
ApoI RAATTY 2 cut(s) 18, 143
AspS9I GGNCC 1 cut(s) 129
AvaII GGWCC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 102
BccI CCATC 1 cut(s) 305
BciT130I CCWGG 1 cut(s) 291
BfaI CTAG 2 cut(s) 23, 370
BisI GCNGC 2 cut(s) 11, 91
BlsI GCNGC 2 cut(s) 12, 92
BmcAI AGTACT 1 cut(s) 176
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 129
BmgT120I GGNCC 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 291
BsaJI CCNNGG 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 132
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 1 cut(s) 316
BseNI ACTGG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 102
BseYI CCCAGC 1 cut(s) 99
BslFI GGGAC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 116
BspACI CCGC 1 cut(s) 66
BsrI ACTGG 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 43
BssT1I CCWWGG 1 cut(s) 43
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 274
BstF5I GGATG 1 cut(s) 316
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstV1I GCAGC 1 cut(s) 102
BtgZI GCGATG 1 cut(s) 171
BtsCI GGATG 1 cut(s) 316
BtsIMutI CAGTG 1 cut(s) 139
Cfr13I GGNCC 1 cut(s) 129
CsiI ACCWGGT 1 cut(s) 289
Csp6I GTAC 1 cut(s) 175
CviAII CATG 2 cut(s) 126, 349
CviJI RGCY 9 cut(s) 10, 26, 63, 93, 99, 216, 297, 322, 346
CviKI_1 RGCY 9 cut(s) 10, 26, 63, 93, 99, 216, 297, 322, 346
CviQI GTAC 1 cut(s) 175
EciI GGCGGA 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 43
FaeI CATG 2 cut(s) 129, 352
FaiI YATR 6 cut(s) 80, 127, 245, 255, 325, 350
FaqI GGGAC 1 cut(s) 116
FatI CATG 2 cut(s) 125, 348
Fnu4HI GCNGC 2 cut(s) 11, 91
FokI GGATG 1 cut(s) 323
Fsp4HI GCNGC 2 cut(s) 11, 91
FspBI CTAG 2 cut(s) 23, 370
GluI GCNGC 2 cut(s) 11, 91
GsaI CCCAGC 1 cut(s) 103
Hin1II CATG 2 cut(s) 129, 352
HincII GTYRAC 1 cut(s) 282
HindII GTYRAC 1 cut(s) 282
HindIII AAGCTT 1 cut(s) 214
Hpy166II GTNNAC 2 cut(s) 196, 282
Hpy8I GTNNAC 2 cut(s) 196, 282
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4IV ACGT 3 cut(s) 105, 150, 278
HpyCH4V TGCA 2 cut(s) 53, 228
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
HpySE526I ACGT 3 cut(s) 105, 150, 278
Hsp92II CATG 2 cut(s) 129, 352
LmnI GCTCC 1 cut(s) 68
LpnPI CCDG 7 cut(s) 81, 85, 145, 243, 276, 283, 303
Lsp1109I GCAGC 1 cut(s) 102
MabI ACCWGGT 1 cut(s) 289
MaeI CTAG 2 cut(s) 23, 370
MaeII ACGT 3 cut(s) 105, 150, 278
MaeIII GTNAC 3 cut(s) 134, 202, 274
MluCI AATT 4 cut(s) 18, 72, 121, 143
MnlI CCTC 6 cut(s) 24, 79, 128, 214, 254, 329
MseI TTAA 2 cut(s) 56, 147
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 96
NlaIII CATG 2 cut(s) 129, 352
NmuCI GTSAC 3 cut(s) 134, 202, 274
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PkrI GCNGC 2 cut(s) 12, 92
Psp1406I AACGTT 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 99
PspGI CCWGG 1 cut(s) 289
PspPI GGNCC 1 cut(s) 129
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SaqAI TTAA 2 cut(s) 56, 147
SatI GCNGC 2 cut(s) 11, 91
Sau96I GGNCC 1 cut(s) 129
ScaI AGTACT 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 291
SexAI ACCWGGT 1 cut(s) 289
SinI GGWCC 1 cut(s) 129
Sse9I AATT 4 cut(s) 18, 72, 121, 143
SsiI CCGC 1 cut(s) 66
SspMI CTAG 2 cut(s) 23, 370
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 43
TaaI ACNGT 1 cut(s) 274
TaiI ACGT 3 cut(s) 108, 153, 281
TasI AATT 4 cut(s) 18, 72, 121, 143
TatI WGTACW 1 cut(s) 174
Tru1I TTAA 2 cut(s) 56, 147
Tru9I TTAA 2 cut(s) 56, 147
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 3 cut(s) 134, 202, 274
TseI GCWGC 2 cut(s) 10, 90
Tsp45I GTSAC 3 cut(s) 134, 202, 274
TspDTI ATGAA 2 cut(s) 114, 356
TspRI CASTG 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 129
XapI RAATTY 2 cut(s) 18, 143
XspI CTAG 2 cut(s) 23, 370
ZrmI AGTACT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.