Prupe.2G271300_v2.0.a1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0013317
Physical Location & Seq
Reverse (-)
27510620 .. 27511453
834 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G271300.1

Sequence Viewer

Length: 558 bp
ATGGGAAGGCTGCTTCCAGTTCTTGTTTTTGGTCTTGCTGTCCTTGGATTTGCATTGACATGCTCTGCTACAACTTACACAGTGGGGGACACCTCTGGCTGGGACATAAGCACTGACCTCAATACATGGTCCAACGACAAAAAATTTAACGTTGGCGATATTCTGTGGTTCCAATACTCATCATCTAATAGTGTTAGTCAAGTGAGCAAAGAAAGCTTTGAGAGTTGCAACACAACCAATGTTGTGAAATCATATACAGGGGGAAACACAACGGTCACATTGACACATGCTGGTGACTGGTATTTTGTGAGTGGTAACAAGCTATACTGCTTGGGAGGGATGAAGCTCCATGCAGAAGTAGAAAACAACCAAGCTTATGCGCCGGCTGGCGCACCACAGGCAGCAACTGGTTCCGGCCAAGGGGATCATCTTCCACAACCTACTTCTAAGAGCAACGTTCCTACTTCAAGTGCATTCATCAACTGTGGACCTAATGTCTTTCTTTTGGCTATCTTAGGTCTTATAGCTTCCATGCTATATACGGATGTTAAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

186

Amino Acids

19.65

Weight (kDa)

5.44

Isoelectric Point (pI)

27.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07475
fragaria_vesca FvH4_7g26810
malus_domestica MD01G1176400.v1.1 MD07G1247200.v1.1
prunus_persica Prupe.2G271300_v2.0.a1
pyrus_communis pycom01g18700 pycom07g22130
rosa_chinensis RchiOBHm_Chr1g0373501
rosa_laevigata RLG00000026821
rosa_multiflora Rmu_co8415803.1_g000001 Rmu_sc0028247.1_g000003
rosa_roxburghii Rroxscaffold_4G00284200
rosa_rugosa Rorug01G0377700
rosa_samantha Rh1AG387000 Rh1BG351300 Rh1CG364100 Rh1DG381800
rosa_wichuraiana Rw1G034830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 2 cut(s) 150, 456
AclWI GGATC 1 cut(s) 432
AcoI YGGCCR 1 cut(s) 415
AcsI RAATTY 1 cut(s) 143
AfiI CCNNNNNNNGG 2 cut(s) 99, 420
AgsI TTSAA 1 cut(s) 468
AhdI GACNNNNNGTC 1 cut(s) 494
AluBI AGCT 5 cut(s) 216, 322, 346, 374, 527
AluI AGCT 5 cut(s) 216, 322, 346, 374, 527
AlwI GGATC 1 cut(s) 432
AlwNI CAGNNNCTG 1 cut(s) 407
AoxI GGCC 1 cut(s) 415
ApeKI GCWGC 2 cut(s) 10, 401
ApoI RAATTY 1 cut(s) 143
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
AspLEI GCGC 2 cut(s) 382, 392
AspS9I GGNCC 2 cut(s) 129, 488
AsuHPI GGTGA 1 cut(s) 305
AvaII GGWCC 2 cut(s) 129, 488
BbvI GCAGC 1 cut(s) 413
BisI GCNGC 2 cut(s) 11, 402
BlsI GCNGC 2 cut(s) 12, 403
Bme18I GGWCC 2 cut(s) 129, 488
BmeRI GACNNNNNGTC 1 cut(s) 494
BmgT120I GGNCC 2 cut(s) 129, 488
BmiI GGNNCC 2 cut(s) 170, 412
BsaJI CCNNGG 2 cut(s) 43, 418
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 420
Bse118I RCCGGY 1 cut(s) 382
Bse1I ACTGG 3 cut(s) 17, 302, 412
BseDI CCNNGG 2 cut(s) 43, 418
BseGI GGATG 2 cut(s) 345, 550
BseLI CCNNNNNNNGG 2 cut(s) 99, 420
BseNI ACTGG 3 cut(s) 17, 302, 412
BseXI GCAGC 1 cut(s) 413
BseYI CCCAGC 1 cut(s) 99
BshFI GGCC 1 cut(s) 417
BsiSI CCGG 2 cut(s) 383, 414
BslFI GGGAC 2 cut(s) 101, 116
BslI CCNNNNNNNGG 2 cut(s) 99, 420
BsmFI GGGAC 2 cut(s) 101, 116
BsmI GAATGC 1 cut(s) 473
BsnI GGCC 1 cut(s) 417
Bsp143I GATC 1 cut(s) 424
BspANI GGCC 1 cut(s) 417
BspLI GGNNCC 2 cut(s) 170, 412
BspPI GGATC 1 cut(s) 432
BsrFI RCCGGY 1 cut(s) 382
BsrI ACTGG 3 cut(s) 17, 302, 412
BssAI RCCGGY 1 cut(s) 382
BssECI CCNNGG 2 cut(s) 43, 418
BssMI GATC 1 cut(s) 424
BssT1I CCWWGG 2 cut(s) 43, 418
Bst4CI ACNGT 3 cut(s) 82, 274, 485
BstC8I GCNNGC 2 cut(s) 384, 388
BstDEI CTNAG 2 cut(s) 447, 514
BstF5I GGATG 2 cut(s) 345, 550
BstHHI GCGC 2 cut(s) 382, 392
BstKTI GATC 1 cut(s) 427
BstMBI GATC 1 cut(s) 424
BstMWI GCNNNNNNNGC 2 cut(s) 213, 398
BstNSI RCATGY 2 cut(s) 63, 290
BstV1I GCAGC 1 cut(s) 413
BsuRI GGCC 1 cut(s) 417
BtsCI GGATG 2 cut(s) 345, 550
BtsIMutI CAGTG 2 cut(s) 87, 111
Cac8I GCNNGC 2 cut(s) 384, 388
CaiI CAGNNNCTG 1 cut(s) 407
CfoI GCGC 2 cut(s) 382, 392
Cfr10I RCCGGY 1 cut(s) 382
Cfr13I GGNCC 2 cut(s) 129, 488
CviAII CATG 5 cut(s) 60, 126, 287, 350, 532
DdeI CTNAG 2 cut(s) 447, 514
DpnI GATC 1 cut(s) 426
DpnII GATC 1 cut(s) 424
DriI GACNNNNNGTC 1 cut(s) 494
EaeI YGGCCR 1 cut(s) 415
Eam1105I GACNNNNNGTC 1 cut(s) 494
Eco130I CCWWGG 2 cut(s) 43, 418
Eco47I GGWCC 2 cut(s) 129, 488
EcoT14I CCWWGG 2 cut(s) 43, 418
ErhI CCWWGG 2 cut(s) 43, 418
FaeI CATG 5 cut(s) 63, 129, 290, 353, 535
FaqI GGGAC 2 cut(s) 101, 116
FatI CATG 5 cut(s) 59, 125, 286, 349, 531
Fnu4HI GCNGC 2 cut(s) 11, 402
FokI GGATG 1 cut(s) 352
Fsp4HI GCNGC 2 cut(s) 11, 402
GlaI GCGC 2 cut(s) 381, 391
GluI GCNGC 2 cut(s) 11, 402
GsaI CCCAGC 1 cut(s) 103
HaeIII GGCC 1 cut(s) 417
HapII CCGG 2 cut(s) 383, 414
HhaI GCGC 2 cut(s) 382, 392
Hin1II CATG 5 cut(s) 63, 129, 290, 353, 535
Hin6I GCGC 2 cut(s) 380, 390
HinP1I GCGC 2 cut(s) 380, 390
HindIII AAGCTT 2 cut(s) 214, 372
HpaII CCGG 2 cut(s) 383, 414
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 1 cut(s) 488
Hpy8I GTNNAC 1 cut(s) 488
HpyCH4III ACNGT 3 cut(s) 82, 274, 485
HpyCH4IV ACGT 2 cut(s) 150, 456
HpyCH4V TGCA 4 cut(s) 53, 228, 353, 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 213, 398
HpyF3I CTNAG 2 cut(s) 447, 514
HpySE526I ACGT 2 cut(s) 150, 456
Hsp92II CATG 5 cut(s) 63, 129, 290, 353, 535
HspAI GCGC 2 cut(s) 380, 390
KroI GCCGGC 1 cut(s) 382
KroNI GCCGGC 1 cut(s) 384
Kzo9I GATC 1 cut(s) 424
LmnI GCTCC 1 cut(s) 351
Lsp1109I GCAGC 1 cut(s) 413
MaeII ACGT 2 cut(s) 150, 456
MaeIII GTNAC 3 cut(s) 274, 293, 314
MalI GATC 1 cut(s) 426
MboI GATC 1 cut(s) 424
MboII GAAGA 1 cut(s) 422
MluCI AATT 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 3 cut(s) 103, 128, 329
MroNI GCCGGC 1 cut(s) 382
MseI TTAA 2 cut(s) 147, 549
MslI CAYNNNNRTG 2 cut(s) 58, 291
MspI CCGG 2 cut(s) 383, 414
Mva1269I GAATGC 1 cut(s) 473
MwoI GCNNNNNNNGC 2 cut(s) 213, 398
NaeI GCCGGC 1 cut(s) 384
NdeII GATC 1 cut(s) 424
NgoMIV GCCGGC 1 cut(s) 382
NlaIII CATG 5 cut(s) 63, 129, 290, 353, 535
NlaIV GGNNCC 2 cut(s) 170, 412
NmuCI GTSAC 2 cut(s) 274, 293
NspI RCATGY 2 cut(s) 63, 290
PctI GAATGC 1 cut(s) 473
PdiI GCCGGC 1 cut(s) 384
PkrI GCNGC 2 cut(s) 12, 403
Psp1406I AACGTT 2 cut(s) 150, 456
PspFI CCCAGC 1 cut(s) 99
PspN4I GGNNCC 2 cut(s) 170, 412
PspPI GGNCC 2 cut(s) 129, 488
PstNI CAGNNNCTG 1 cut(s) 407
RseI CAYNNNNRTG 2 cut(s) 58, 291
SaqAI TTAA 2 cut(s) 147, 549
SatI GCNGC 2 cut(s) 11, 402
Sau3AI GATC 1 cut(s) 424
Sau96I GGNCC 2 cut(s) 129, 488
SinI GGWCC 2 cut(s) 129, 488
SmiMI CAYNNNNRTG 2 cut(s) 58, 291
Sse9I AATT 1 cut(s) 143
StyI CCWWGG 2 cut(s) 43, 418
TaaI ACNGT 3 cut(s) 82, 274, 485
TaiI ACGT 2 cut(s) 153, 459
TasI AATT 1 cut(s) 143
Tru1I TTAA 2 cut(s) 147, 549
Tru9I TTAA 2 cut(s) 147, 549
TscAI CASTG 2 cut(s) 87, 118
TseFI GTSAC 2 cut(s) 274, 293
TseI GCWGC 2 cut(s) 10, 401
Tsp45I GTSAC 2 cut(s) 274, 293
TspDTI ATGAA 2 cut(s) 356, 466
TspGWI ACGGA 1 cut(s) 557
TspRI CASTG 2 cut(s) 87, 118
VpaK11BI GGWCC 2 cut(s) 129, 488
XapI RAATTY 1 cut(s) 143
XceI RCATGY 2 cut(s) 63, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.