Rh1CG364100

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0013317
Physical Location & Seq
Reverse (-)
63655051 .. 63657961
2911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG364100.1

Sequence Viewer

Length: 600 bp
ATGGCAAAGCTTCTTCTGGTTTGTGGTCTTGTGGTTCTTGGATTTGCACTAACATGCTATGCTGCCACAACCTACACGGTGGGTGGTAACTCTGGCTGGGACATAAGCACTGATCTCCCTACATGGGCCTCAGACAAGAAGTTCGTCGTCGGCGATGTTCTATGGTTCCAGTATTCATCATCAAACAGTGTCAATCAAGTGACCAAAGAAAACTTCGAGGGCTGCAACACGACCAATGTAGTGAAGTCATATACCGGAGGGAACACAACGGTCACATTGACAAGACCTGGTGAGTGGTATTTTGTGAGTGGTAACAAGCTCTATTGCTTGGGAGGGATGAAGCTTCAAGTACCCGTGCAGGGTAACCAACTATCTTATGCGCCGGCCAGGGCACCGCAGTCGTCAACCGGTTCGGACCAAGGGCCTAACTCTCTTCCGAACGACCCTTCTTCTAAGAACAACACTCCCACTTCAGCTGGGCTCAGCATCCATGGTGGTTCTGATAATGTTCTTGTCTTGATTGTTTTCGGGATTGATCATCATGTGGTTTTGGGGGGGGTCCACTATATGAAGAGAAGGTTTTTCCCTCAGATTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

199

Amino Acids

21.35

Weight (kDa)

7.67

Isoelectric Point (pI)

33.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 113 3.7e-21 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07475
fragaria_vesca FvH4_7g26810
malus_domestica MD01G1176400.v1.1 MD07G1247200.v1.1
prunus_persica Prupe.2G271300_v2.0.a1
pyrus_communis pycom01g18700 pycom07g22130
rosa_chinensis RchiOBHm_Chr1g0373501
rosa_laevigata RLG00000026821
rosa_multiflora Rmu_co8415803.1_g000001 Rmu_sc0028247.1_g000003
rosa_roxburghii Rroxscaffold_4G00284200
rosa_rugosa Rorug01G0377700
rosa_samantha Rh1AG387000 Rh1BG351300 Rh1CG364100 Rh1DG381800
rosa_wichuraiana Rw1G034830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 391
AciI CCGC 1 cut(s) 395
AcoI YGGCCR 1 cut(s) 384
AcuI CTGAAG 1 cut(s) 456
AfaI GTAC 1 cut(s) 351
AfiI CCNNNNNNNGG 2 cut(s) 124, 359
AgeI ACCGGT 1 cut(s) 407
AgsI TTSAA 1 cut(s) 347
AjnI CCWGG 2 cut(s) 286, 386
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AluBI AGCT 4 cut(s) 10, 319, 343, 476
AluI AGCT 4 cut(s) 10, 319, 343, 476
AoxI GGCC 3 cut(s) 126, 384, 422
ApeKI GCWGC 2 cut(s) 62, 222
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AsiGI ACCGGT 1 cut(s) 407
AspLEI GCGC 1 cut(s) 382
AspS9I GGNCC 4 cut(s) 126, 415, 422, 559
AsuHPI GGTGA 1 cut(s) 302
AvaII GGWCC 2 cut(s) 415, 559
BaeGI GKGCMC 1 cut(s) 394
BanI GGYRCC 1 cut(s) 391
BanII GRGCYC 1 cut(s) 483
BbvI GCAGC 2 cut(s) 49, 209
BcgI CGANNNNNNTGC 2 cut(s) 381, 415
BciT130I CCWGG 2 cut(s) 288, 388
BclI TGATCA 1 cut(s) 535
BisI GCNGC 2 cut(s) 63, 223
BlpI GCTNAGC 1 cut(s) 482
BlsI GCNGC 2 cut(s) 64, 224
Bme1390I CCNGG 2 cut(s) 288, 388
Bme18I GGWCC 2 cut(s) 415, 559
BmgT120I GGNCC 4 cut(s) 126, 415, 422, 559
BmiI GGNNCC 3 cut(s) 167, 393, 560
BmrFI CCNGG 2 cut(s) 288, 388
BmsI GCATC 1 cut(s) 495
Bpu1102I GCTNAGC 1 cut(s) 482
BsaJI CCNNGG 3 cut(s) 387, 418, 490
BsaWI WCCGGW 2 cut(s) 254, 407
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 359
Bse118I RCCGGY 2 cut(s) 382, 407
Bse1I ACTGG 1 cut(s) 169
BseBI CCWGG 2 cut(s) 288, 388
BseDI CCNNGG 3 cut(s) 387, 418, 490
BseGI GGATG 2 cut(s) 342, 486
BseLI CCNNNNNNNGG 2 cut(s) 124, 359
BseMII CTCAG 2 cut(s) 144, 496
BseNI ACTGG 1 cut(s) 169
BseSI GKGCMC 1 cut(s) 394
BseXI GCAGC 2 cut(s) 49, 209
BseYI CCCAGC 2 cut(s) 96, 476
BsgI GTGCAG 1 cut(s) 377
BshFI GGCC 3 cut(s) 128, 386, 424
BshNI GGYRCC 1 cut(s) 391
BshTI ACCGGT 1 cut(s) 407
BsiSI CCGG 3 cut(s) 255, 383, 408
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 2 cut(s) 124, 359
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 3 cut(s) 128, 386, 424
Bsp1286I GDGCHC 2 cut(s) 394, 483
Bsp143I GATC 2 cut(s) 112, 535
Bsp1720I GCTNAGC 1 cut(s) 482
Bsp19I CCATGG 1 cut(s) 490
BspACI CCGC 1 cut(s) 395
BspANI GGCC 3 cut(s) 128, 386, 424
BspCNI CTCAG 2 cut(s) 143, 495
BspLI GGNNCC 3 cut(s) 167, 393, 560
BspT107I GGYRCC 1 cut(s) 391
BsrFI RCCGGY 2 cut(s) 382, 407
BsrI ACTGG 1 cut(s) 169
BssAI RCCGGY 2 cut(s) 382, 407
BssECI CCNNGG 3 cut(s) 387, 418, 490
BssMI GATC 2 cut(s) 112, 535
BssT1I CCWWGG 2 cut(s) 418, 490
Bst2UI CCWGG 2 cut(s) 288, 388
Bst4CI ACNGT 3 cut(s) 79, 188, 271
Bst6I CTCTTC 2 cut(s) 438, 566
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 4 cut(s) 130, 453, 482, 588
BstDSI CCRYGG 1 cut(s) 490
BstEII GGTNACC 1 cut(s) 362
BstF5I GGATG 2 cut(s) 342, 486
BstHHI GCGC 1 cut(s) 382
BstKTI GATC 2 cut(s) 115, 538
BstMBI GATC 2 cut(s) 112, 535
BstNI CCWGG 2 cut(s) 288, 388
BstNSI RCATGY 1 cut(s) 57
BstPI GGTNACC 1 cut(s) 362
BstSCI CCNGG 2 cut(s) 286, 386
BstSLI GKGCMC 1 cut(s) 394
BstV1I GCAGC 2 cut(s) 49, 209
BsuRI GGCC 3 cut(s) 128, 386, 424
BtgI CCRYGG 1 cut(s) 490
BtgZI GCGATG 1 cut(s) 168
BtsCI GGATG 2 cut(s) 342, 486
BtsIMutI CAGTG 2 cut(s) 108, 193
Cac8I GCNNGC 1 cut(s) 384
CfoI GCGC 1 cut(s) 382
Cfr10I RCCGGY 2 cut(s) 382, 407
Cfr13I GGNCC 4 cut(s) 126, 415, 422, 559
CsiI ACCWGGT 1 cut(s) 286
Csp6I GTAC 1 cut(s) 350
CspAI ACCGGT 1 cut(s) 407
CviAII CATG 4 cut(s) 54, 123, 491, 542
CviQI GTAC 1 cut(s) 350
DdeI CTNAG 4 cut(s) 130, 453, 482, 588
DpnI GATC 2 cut(s) 114, 537
DpnII GATC 2 cut(s) 112, 535
EaeI YGGCCR 1 cut(s) 384
Eam1104I CTCTTC 2 cut(s) 438, 566
EarI CTCTTC 2 cut(s) 438, 566
Eco130I CCWWGG 2 cut(s) 418, 490
Eco24I GRGCYC 1 cut(s) 483
Eco47I GGWCC 2 cut(s) 415, 559
Eco57I CTGAAG 1 cut(s) 456
Eco91I GGTNACC 1 cut(s) 362
EcoO109I RGGNCCY 1 cut(s) 422
EcoO65I GGTNACC 1 cut(s) 362
EcoRII CCWGG 2 cut(s) 286, 386
EcoT14I CCWWGG 2 cut(s) 418, 490
EcoT38I GRGCYC 1 cut(s) 483
ErhI CCWWGG 2 cut(s) 418, 490
FaeI CATG 4 cut(s) 57, 126, 494, 545
FaqI GGGAC 1 cut(s) 113
FatI CATG 4 cut(s) 53, 122, 490, 541
FbaI TGATCA 1 cut(s) 535
Fnu4HI GCNGC 2 cut(s) 63, 223
FokI GGATG 2 cut(s) 349, 473
FriOI GRGCYC 1 cut(s) 483
Fsp4HI GCNGC 2 cut(s) 63, 223
GlaI GCGC 1 cut(s) 381
GluI GCNGC 2 cut(s) 63, 223
GsaI CCCAGC 2 cut(s) 100, 480
HaeIII GGCC 3 cut(s) 128, 386, 424
HapII CCGG 3 cut(s) 255, 383, 408
HhaI GCGC 1 cut(s) 382
Hin1II CATG 4 cut(s) 57, 126, 494, 545
Hin6I GCGC 1 cut(s) 380
HinP1I GCGC 1 cut(s) 380
HincII GTYRAC 1 cut(s) 405
HindII GTYRAC 1 cut(s) 405
HindIII AAGCTT 2 cut(s) 8, 341
HpaII CCGG 3 cut(s) 255, 383, 408
HphI GGTGA 1 cut(s) 302
Hpy166II GTNNAC 2 cut(s) 405, 562
Hpy188I TCNGA 5 cut(s) 133, 415, 438, 502, 591
Hpy188III TCNNGA 2 cut(s) 517, 529
Hpy8I GTNNAC 2 cut(s) 405, 562
Hpy99I CGWCG 2 cut(s) 149, 152
HpyAV CCTTC 2 cut(s) 456, 570
HpyCH4III ACNGT 3 cut(s) 79, 188, 271
HpyCH4V TGCA 3 cut(s) 47, 225, 358
HpyF3I CTNAG 4 cut(s) 130, 453, 482, 588
Hsp92II CATG 4 cut(s) 57, 126, 494, 545
HspAI GCGC 1 cut(s) 380
KroI GCCGGC 1 cut(s) 382
KroNI GCCGGC 1 cut(s) 384
Ksp22I TGATCA 1 cut(s) 535
Kzo9I GATC 2 cut(s) 112, 535
Lsp1109I GCAGC 2 cut(s) 49, 209
LweI GCATC 1 cut(s) 495
MabI ACCWGGT 1 cut(s) 286
MaeIII GTNAC 5 cut(s) 86, 199, 271, 311, 362
MalI GATC 2 cut(s) 114, 537
MboI GATC 2 cut(s) 112, 535
MboII GAAGA 4 cut(s) 5, 425, 441, 583
MhlI GDGCHC 2 cut(s) 394, 483
MnlI CCTC 5 cut(s) 139, 211, 251, 326, 597
MroNI GCCGGC 1 cut(s) 382
MseI TTAA 1 cut(s) 598
MslI CAYNNNNRTG 1 cut(s) 52
MspA1I CMGCKG 1 cut(s) 476
MspI CCGG 3 cut(s) 255, 383, 408
MspR9I CCNGG 2 cut(s) 288, 388
MvaI CCWGG 2 cut(s) 288, 388
NaeI GCCGGC 1 cut(s) 384
NcoI CCATGG 1 cut(s) 490
NdeII GATC 2 cut(s) 112, 535
NgoMIV GCCGGC 1 cut(s) 382
NlaIII CATG 4 cut(s) 57, 126, 494, 545
NlaIV GGNNCC 3 cut(s) 167, 393, 560
NmuCI GTSAC 2 cut(s) 199, 271
NspI RCATGY 1 cut(s) 57
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PdiI GCCGGC 1 cut(s) 384
PinAI ACCGGT 1 cut(s) 407
PkrI GCNGC 2 cut(s) 64, 224
Psp6I CCWGG 2 cut(s) 286, 386
PspEI GGTNACC 1 cut(s) 362
PspFI CCCAGC 2 cut(s) 96, 476
PspGI CCWGG 2 cut(s) 286, 386
PspN4I GGNNCC 3 cut(s) 167, 393, 560
PspPI GGNCC 4 cut(s) 126, 415, 422, 559
PvuII CAGCTG 1 cut(s) 476
RsaI GTAC 1 cut(s) 351
RsaNI GTAC 1 cut(s) 350
RseI CAYNNNNRTG 1 cut(s) 52
SaqAI TTAA 1 cut(s) 598
SatI GCNGC 2 cut(s) 63, 223
Sau3AI GATC 2 cut(s) 112, 535
Sau96I GGNCC 4 cut(s) 126, 415, 422, 559
ScrFI CCNGG 2 cut(s) 288, 388
SduI GDGCHC 2 cut(s) 394, 483
SetI ASST 7 cut(s) 12, 74, 289, 321, 345, 478, 581
SexAI ACCWGGT 1 cut(s) 286
SfaNI GCATC 1 cut(s) 495
SinI GGWCC 2 cut(s) 415, 559
SmiMI CAYNNNNRTG 1 cut(s) 52
SsiI CCGC 1 cut(s) 395
StyD4I CCNGG 2 cut(s) 286, 386
StyI CCWWGG 2 cut(s) 418, 490
TaaI ACNGT 3 cut(s) 79, 188, 271
TaqI TCGA 1 cut(s) 216
Tru1I TTAA 1 cut(s) 598
Tru9I TTAA 1 cut(s) 598
TscAI CASTG 2 cut(s) 115, 193
TseFI GTSAC 2 cut(s) 199, 271
TseI GCWGC 2 cut(s) 62, 222
Tsp45I GTSAC 2 cut(s) 199, 271
TspDTI ATGAA 3 cut(s) 165, 353, 584
TspRI CASTG 2 cut(s) 115, 193
VpaK11BI GGWCC 2 cut(s) 415, 559
XceI RCATGY 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.