FvH4_7g26810

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013317
Physical Location & Seq
Reverse (-)
20172244 .. 20173075
832 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26810.t1

Sequence Viewer

Length: 543 bp
ATGGCAAAGCTTCTTCTGGTGTGTGGTCTTGTGGCTCTTGGATTTGCATTGACATGCTATGCCGCCACAACCTACACGGTGGGTGGTAACTCCGGCTGGGACATAAGCACTGATCTTCCTACATGGGCCTCGGACAAGAAGTTTGTGGTGGGCGATGTTCTATGGTTCCAGTATTCATCATCAAATAGTGTCAATCAAGTTACCAAAGAAAACTACGAGGGCTGCAACACGACCAATGTAGTGAAGTCATACACCGGAGGGAACACAACGGTCACATTGACAAGACCTGGTGATTGGTATTTTGTGAGTGGCAACAAGCTCTATTGCTTGGGAGGGATGAAGCTTCAAGTTCCCGTGCAAGGTAACCAACTATCTTACGCGCCGGCCAGTGCGCCGCAGTCGTCGACTGGGCCTAGCTCTCTTCCGAACCCTTCTTCCAAGAGCGACATTCCCACTTCAGCTGGGCTCAGCATCCATGGTGGTTCTGATCATGTTCTTGTCTTGTCTATGTTAGGAACTTTAGCTGCCATGCTATGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

181

Amino Acids

18.98

Weight (kDa)

6.69

Isoelectric Point (pI)

30.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 113 1.7e-21 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07475
fragaria_vesca FvH4_7g26810
malus_domestica MD01G1176400.v1.1 MD07G1247200.v1.1
prunus_persica Prupe.2G271300_v2.0.a1
pyrus_communis pycom01g18700 pycom07g22130
rosa_chinensis RchiOBHm_Chr1g0373501
rosa_laevigata RLG00000026821
rosa_multiflora Rmu_co8415803.1_g000001 Rmu_sc0028247.1_g000003
rosa_roxburghii Rroxscaffold_4G00284200
rosa_rugosa Rorug01G0377700
rosa_samantha Rh1AG387000 Rh1BG351300 Rh1CG364100 Rh1DG381800
rosa_wichuraiana Rw1G034830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 534
AccI GTMKAC 1 cut(s) 404
AccII CGCG 1 cut(s) 380
AciI CCGC 2 cut(s) 63, 395
AcoI YGGCCR 1 cut(s) 384
AcuI CTGAAG 1 cut(s) 441
AfiI CCNNNNNNNGG 2 cut(s) 359, 534
AgsI TTSAA 1 cut(s) 347
AjnI CCWGG 1 cut(s) 286
AloI GAACNNNNNNTCC 2 cut(s) 419, 451
AluBI AGCT 6 cut(s) 10, 319, 343, 417, 461, 524
AluI AGCT 6 cut(s) 10, 319, 343, 417, 461, 524
AoxI GGCC 3 cut(s) 126, 384, 410
ApeKI GCWGC 2 cut(s) 222, 524
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AspLEI GCGC 2 cut(s) 382, 394
AspS9I GGNCC 2 cut(s) 126, 410
AsuHPI GGTGA 1 cut(s) 302
BanII GRGCYC 1 cut(s) 468
BbvI GCAGC 2 cut(s) 209, 511
BciT130I CCWGG 1 cut(s) 288
BclI TGATCA 1 cut(s) 487
BfaI CTAG 1 cut(s) 414
BisI GCNGC 4 cut(s) 63, 223, 395, 525
BlpI GCTNAGC 1 cut(s) 467
BlsI GCNGC 4 cut(s) 64, 224, 396, 526
Bme1390I CCNGG 1 cut(s) 288
BmgT120I GGNCC 2 cut(s) 126, 410
BmiI GGNNCC 1 cut(s) 167
BmrFI CCNGG 1 cut(s) 288
BmrI ACTGGG 1 cut(s) 417
BmsI GCATC 1 cut(s) 480
BmuI ACTGGG 1 cut(s) 417
Bpu1102I GCTNAGC 1 cut(s) 467
BsaJI CCNNGG 2 cut(s) 129, 475
BsaWI WCCGGW 1 cut(s) 254
Bsc4I CCNNNNNNNGG 2 cut(s) 359, 534
Bse118I RCCGGY 1 cut(s) 382
Bse1I ACTGG 3 cut(s) 169, 387, 412
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 2 cut(s) 129, 475
BseGI GGATG 3 cut(s) 342, 471, 543
BseLI CCNNNNNNNGG 2 cut(s) 359, 534
BseMII CTCAG 1 cut(s) 481
BseNI ACTGG 3 cut(s) 169, 387, 412
BseXI GCAGC 2 cut(s) 209, 511
BseYI CCCAGC 2 cut(s) 96, 461
Bsh1236I CGCG 1 cut(s) 380
BshFI GGCC 3 cut(s) 128, 386, 412
BsiSI CCGG 3 cut(s) 93, 255, 383
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 2 cut(s) 359, 534
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 3 cut(s) 128, 386, 412
Bsp1286I GDGCHC 1 cut(s) 468
Bsp143I GATC 2 cut(s) 112, 487
Bsp1720I GCTNAGC 1 cut(s) 467
Bsp19I CCATGG 1 cut(s) 475
BspACI CCGC 2 cut(s) 63, 395
BspANI GGCC 3 cut(s) 128, 386, 412
BspCNI CTCAG 1 cut(s) 480
BspFNI CGCG 1 cut(s) 380
BspLI GGNNCC 1 cut(s) 167
BsrFI RCCGGY 1 cut(s) 382
BsrI ACTGG 3 cut(s) 169, 387, 412
BssAI RCCGGY 1 cut(s) 382
BssECI CCNNGG 2 cut(s) 129, 475
BssMI GATC 2 cut(s) 112, 487
BssT1I CCWWGG 1 cut(s) 475
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 2 cut(s) 79, 271
Bst6I CTCTTC 1 cut(s) 426
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 1 cut(s) 467
BstDSI CCRYGG 1 cut(s) 475
BstEII GGTNACC 1 cut(s) 362
BstF5I GGATG 3 cut(s) 342, 471, 543
BstFNI CGCG 1 cut(s) 380
BstHHI GCGC 2 cut(s) 382, 394
BstKTI GATC 2 cut(s) 115, 490
BstMBI GATC 2 cut(s) 112, 487
BstNI CCWGG 1 cut(s) 288
BstNSI RCATGY 1 cut(s) 57
BstPI GGTNACC 1 cut(s) 362
BstSCI CCNGG 1 cut(s) 286
BstUI CGCG 1 cut(s) 380
BstV1I GCAGC 2 cut(s) 209, 511
BsuRI GGCC 3 cut(s) 128, 386, 412
BtgI CCRYGG 1 cut(s) 475
BtgZI GCGATG 1 cut(s) 168
BtsCI GGATG 3 cut(s) 342, 471, 543
BtsIMutI CAGTG 2 cut(s) 108, 394
Cac8I GCNNGC 1 cut(s) 384
CfoI GCGC 2 cut(s) 382, 394
Cfr10I RCCGGY 1 cut(s) 382
Cfr13I GGNCC 2 cut(s) 126, 410
CsiI ACCWGGT 1 cut(s) 286
CviAII CATG 5 cut(s) 54, 123, 476, 491, 529
DdeI CTNAG 1 cut(s) 467
DpnI GATC 2 cut(s) 114, 489
DpnII GATC 2 cut(s) 112, 487
EaeI YGGCCR 1 cut(s) 384
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Eco130I CCWWGG 1 cut(s) 475
Eco24I GRGCYC 1 cut(s) 468
Eco57I CTGAAG 1 cut(s) 441
Eco91I GGTNACC 1 cut(s) 362
EcoO65I GGTNACC 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 475
EcoT38I GRGCYC 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 475
FaeI CATG 5 cut(s) 57, 126, 479, 494, 532
FaqI GGGAC 1 cut(s) 113
FatI CATG 5 cut(s) 53, 122, 475, 490, 528
FbaI TGATCA 1 cut(s) 487
FblI GTMKAC 1 cut(s) 404
Fnu4HI GCNGC 4 cut(s) 63, 223, 395, 525
FokI GGATG 2 cut(s) 349, 458
FriOI GRGCYC 1 cut(s) 468
Fsp4HI GCNGC 4 cut(s) 63, 223, 395, 525
FspBI CTAG 1 cut(s) 414
GlaI GCGC 2 cut(s) 381, 393
GluI GCNGC 4 cut(s) 63, 223, 395, 525
GsaI CCCAGC 2 cut(s) 100, 465
HaeIII GGCC 3 cut(s) 128, 386, 412
HapII CCGG 3 cut(s) 93, 255, 383
HhaI GCGC 2 cut(s) 382, 394
Hin1II CATG 5 cut(s) 57, 126, 479, 494, 532
Hin6I GCGC 2 cut(s) 380, 392
HinP1I GCGC 2 cut(s) 380, 392
HincII GTYRAC 1 cut(s) 405
HindII GTYRAC 1 cut(s) 405
HindIII AAGCTT 2 cut(s) 8, 341
HpaII CCGG 3 cut(s) 93, 255, 383
HphI GGTGA 1 cut(s) 302
Hpy166II GTNNAC 1 cut(s) 405
Hpy188I TCNGA 3 cut(s) 133, 426, 487
Hpy8I GTNNAC 1 cut(s) 405
Hpy99I CGWCG 1 cut(s) 406
HpyAV CCTTC 1 cut(s) 441
HpyCH4III ACNGT 2 cut(s) 79, 271
HpyCH4V TGCA 3 cut(s) 47, 225, 358
HpyF3I CTNAG 1 cut(s) 467
Hsp92II CATG 5 cut(s) 57, 126, 479, 494, 532
HspAI GCGC 2 cut(s) 380, 392
KroI GCCGGC 1 cut(s) 382
KroNI GCCGGC 1 cut(s) 384
Ksp22I TGATCA 1 cut(s) 487
Kzo9I GATC 2 cut(s) 112, 487
Lsp1109I GCAGC 2 cut(s) 209, 511
LweI GCATC 1 cut(s) 480
MabI ACCWGGT 1 cut(s) 286
MaeI CTAG 1 cut(s) 414
MaeIII GTNAC 4 cut(s) 86, 199, 271, 362
MalI GATC 2 cut(s) 114, 489
MboI GATC 2 cut(s) 112, 487
MboII GAAGA 4 cut(s) 5, 107, 413, 426
MhlI GDGCHC 1 cut(s) 468
MnlI CCTC 4 cut(s) 139, 211, 251, 326
MroNI GCCGGC 1 cut(s) 382
MslI CAYNNNNRTG 1 cut(s) 52
MspA1I CMGCKG 1 cut(s) 461
MspI CCGG 3 cut(s) 93, 255, 383
MspR9I CCNGG 1 cut(s) 288
MvaI CCWGG 1 cut(s) 288
MvnI CGCG 1 cut(s) 380
NaeI GCCGGC 1 cut(s) 384
NcoI CCATGG 1 cut(s) 475
NdeII GATC 2 cut(s) 112, 487
NgoMIV GCCGGC 1 cut(s) 382
NlaIII CATG 5 cut(s) 57, 126, 479, 494, 532
NlaIV GGNNCC 1 cut(s) 167
NmuCI GTSAC 1 cut(s) 271
NspI RCATGY 1 cut(s) 57
PdiI GCCGGC 1 cut(s) 384
PflMI CCANNNNNTGG 1 cut(s) 534
PkrI GCNGC 4 cut(s) 64, 224, 396, 526
Psp6I CCWGG 1 cut(s) 286
PspEI GGTNACC 1 cut(s) 362
PspFI CCCAGC 2 cut(s) 96, 461
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 1 cut(s) 167
PspPI GGNCC 2 cut(s) 126, 410
PvuII CAGCTG 1 cut(s) 461
RseI CAYNNNNRTG 1 cut(s) 52
SalI GTCGAC 1 cut(s) 403
SatI GCNGC 4 cut(s) 63, 223, 395, 525
Sau3AI GATC 2 cut(s) 112, 487
Sau96I GGNCC 2 cut(s) 126, 410
ScrFI CCNGG 1 cut(s) 288
SduI GDGCHC 1 cut(s) 468
SetI ASST 9 cut(s) 12, 74, 289, 321, 345, 364, 419, 463, 526
SexAI ACCWGGT 1 cut(s) 286
SfaNI GCATC 1 cut(s) 480
SmiMI CAYNNNNRTG 1 cut(s) 52
SsiI CCGC 2 cut(s) 63, 395
SspMI CTAG 1 cut(s) 414
StyD4I CCNGG 1 cut(s) 286
StyI CCWWGG 1 cut(s) 475
TaaI ACNGT 2 cut(s) 79, 271
TaqI TCGA 1 cut(s) 404
TauI GCSGC 2 cut(s) 65, 397
TscAI CASTG 2 cut(s) 115, 394
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 2 cut(s) 222, 524
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 2 cut(s) 165, 353
TspRI CASTG 2 cut(s) 115, 394
Van91I CCANNNNNTGG 1 cut(s) 534
XceI RCATGY 1 cut(s) 57
XmiI GTMKAC 1 cut(s) 404
XspI CTAG 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.