pycom01g18700

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0013317
Physical Location & Seq
Reverse (-)
17568807 .. 17569717
911 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g18700.2

Sequence Viewer

Length: 597 bp
ATGAAACTTCTTTCTTATTATGTCTCATCTCACAAATTAAAAATGGCAAAGCTGCCTCAAATTCTAGTTTGTGTTCTTCTTGTTCTTGGATTTGCATTGACAAGCTCCGCCACAGTTTACACAGTTGGGGACACCTCCGGCTGGGACATAAGCACTGACCTCAATTCATGGTCCAACAACAAGACATTCAAAGTTGGCGATGCGCTATCTTTTCAGTACTCATCATCTAACAGTGTGAGTCAAGTGACCAAAGAAAGTTTTGATGTTTGCAACACAACAAAAGTTATAAAGACATATACGGGAGGAAACACAACTGTTACATTGACAAAACCTGGTGACTGGTACTTTGTGAGTGGGAGCAAGCTGTATTGTTTGGGAGGGATGAAGCTCGTAGCAGAAGTAGAAAACAACCAGGCTTATGAGCCGGCCGGTGCGCCAGAGGCAGGAACTGGTTCCGGCCAAGGGGATCTTCCAAACCCTACTACTAAGAGCAACAGTCCCACCTCATCTGCTTTCATCAACTGTGGACCTAATGCCTTTGTGCTGGCCATCTTTGGTCTTATTGCTGTCACGCTATATATGGAAGTGACAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

199

Amino Acids

21.08

Weight (kDa)

6.55

Isoelectric Point (pI)

23.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07475
fragaria_vesca FvH4_7g26810
malus_domestica MD01G1176400.v1.1 MD07G1247200.v1.1
prunus_persica Prupe.2G271300_v2.0.a1
pyrus_communis pycom01g18700 pycom07g22130
rosa_chinensis RchiOBHm_Chr1g0373501
rosa_laevigata RLG00000026821
rosa_multiflora Rmu_co8415803.1_g000001 Rmu_sc0028247.1_g000003
rosa_roxburghii Rroxscaffold_4G00284200
rosa_rugosa Rorug01G0377700
rosa_samantha Rh1AG387000 Rh1BG351300 Rh1CG364100 Rh1DG381800
rosa_wichuraiana Rw1G034830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 287
AciI CCGC 1 cut(s) 108
AclWI GGATC 1 cut(s) 474
AcoI YGGCCR 3 cut(s) 426, 457, 546
AcsI RAATTY 1 cut(s) 60
AfaI GTAC 2 cut(s) 218, 344
AfiI CCNNNNNNNGG 3 cut(s) 141, 443, 462
AgsI TTSAA 1 cut(s) 190
AjnI CCWGG 2 cut(s) 331, 411
AjuI GAANNNNNNNTTGG 2 cut(s) 453, 485
AluBI AGCT 4 cut(s) 52, 105, 364, 388
AluI AGCT 4 cut(s) 52, 105, 364, 388
Alw26I GTCTC 1 cut(s) 28
AlwI GGATC 1 cut(s) 474
AlwNI CAGNNNCTG 1 cut(s) 449
AoxI GGCC 3 cut(s) 426, 457, 546
ApeKI GCWGC 1 cut(s) 52
ApoI RAATTY 1 cut(s) 60
ArsI GACNNNNNNTTYG 2 cut(s) 329, 361
Asp700I GAANNNNTTC 1 cut(s) 451
AspLEI GCGC 2 cut(s) 205, 436
AspS9I GGNCC 2 cut(s) 171, 527
AsuHPI GGTGA 1 cut(s) 347
AvaII GGWCC 2 cut(s) 171, 527
BalI TGGCCA 1 cut(s) 548
BbvI GCAGC 1 cut(s) 39
BccI CCATC 1 cut(s) 557
BciT130I CCWGG 2 cut(s) 333, 413
BcoDI GTCTC 1 cut(s) 28
BfaI CTAG 1 cut(s) 65
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
BmcAI AGTACT 1 cut(s) 218
Bme1390I CCNGG 2 cut(s) 333, 413
Bme18I GGWCC 2 cut(s) 171, 527
BmgT120I GGNCC 2 cut(s) 171, 527
BmiI GGNNCC 1 cut(s) 454
BmrFI CCNGG 2 cut(s) 333, 413
BmsI GCATC 1 cut(s) 190
BsaJI CCNNGG 1 cut(s) 460
Bsc4I CCNNNNNNNGG 3 cut(s) 141, 443, 462
Bse118I RCCGGY 2 cut(s) 424, 428
Bse1I ACTGG 2 cut(s) 344, 454
BseBI CCWGG 2 cut(s) 333, 413
BseDI CCNNGG 1 cut(s) 460
BseGI GGATG 1 cut(s) 387
BseLI CCNNNNNNNGG 3 cut(s) 141, 443, 462
BseNI ACTGG 2 cut(s) 344, 454
BseX3I CGGCCG 1 cut(s) 426
BseXI GCAGC 1 cut(s) 39
BseYI CCCAGC 1 cut(s) 141
Bsh1285I CGRYCG 1 cut(s) 429
BshFI GGCC 3 cut(s) 428, 459, 548
BsiEI CGRYCG 1 cut(s) 429
BsiSI CCGG 4 cut(s) 138, 425, 429, 456
BslFI GGGAC 3 cut(s) 143, 158, 483
BslI CCNNNNNNNGG 3 cut(s) 141, 443, 462
BsmAI GTCTC 1 cut(s) 28
BsmFI GGGAC 3 cut(s) 143, 158, 483
BsnI GGCC 3 cut(s) 428, 459, 548
Bsp143I GATC 1 cut(s) 466
BspACI CCGC 1 cut(s) 108
BspANI GGCC 3 cut(s) 428, 459, 548
BspLI GGNNCC 1 cut(s) 454
BspPI GGATC 1 cut(s) 474
BsrFI RCCGGY 2 cut(s) 424, 428
BsrI ACTGG 2 cut(s) 344, 454
BssAI RCCGGY 2 cut(s) 424, 428
BssECI CCNNGG 1 cut(s) 460
BssMI GATC 1 cut(s) 466
BssT1I CCWWGG 1 cut(s) 460
Bst2UI CCWGG 2 cut(s) 333, 413
Bst4CI ACNGT 6 cut(s) 115, 124, 233, 316, 497, 524
BstC8I GCNNGC 3 cut(s) 362, 426, 546
BstDEI CTNAG 1 cut(s) 486
BstF5I GGATG 1 cut(s) 387
BstHHI GCGC 2 cut(s) 205, 436
BstKTI GATC 1 cut(s) 469
BstMAI GTCTC 1 cut(s) 28
BstMBI GATC 1 cut(s) 466
BstMCI CGRYCG 1 cut(s) 429
BstMWI GCNNNNNNNGC 1 cut(s) 440
BstNI CCWGG 2 cut(s) 333, 413
BstSCI CCNGG 2 cut(s) 331, 411
BstV1I GCAGC 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
BstZI CGGCCG 1 cut(s) 426
BsuRI GGCC 3 cut(s) 428, 459, 548
BtgZI GCGATG 1 cut(s) 213
BtsCI GGATG 1 cut(s) 387
BtsIMutI CAGTG 2 cut(s) 153, 238
Cac8I GCNNGC 3 cut(s) 362, 426, 546
CaiI CAGNNNCTG 1 cut(s) 449
CfoI GCGC 2 cut(s) 205, 436
Cfr10I RCCGGY 2 cut(s) 424, 428
Cfr13I GGNCC 2 cut(s) 171, 527
CsiI ACCWGGT 1 cut(s) 331
Csp6I GTAC 2 cut(s) 217, 343
CviAII CATG 1 cut(s) 168
CviQI GTAC 2 cut(s) 217, 343
DdeI CTNAG 1 cut(s) 486
DpnI GATC 1 cut(s) 468
DpnII GATC 1 cut(s) 466
EaeI YGGCCR 3 cut(s) 426, 457, 546
EagI CGGCCG 1 cut(s) 426
EciI GGCGGA 1 cut(s) 97
EclXI CGGCCG 1 cut(s) 426
Eco130I CCWWGG 1 cut(s) 460
Eco47I GGWCC 2 cut(s) 171, 527
Eco52I CGGCCG 1 cut(s) 426
EcoRII CCWGG 2 cut(s) 331, 411
EcoT14I CCWWGG 1 cut(s) 460
ErhI CCWWGG 1 cut(s) 460
FaeI CATG 1 cut(s) 171
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FaqI GGGAC 3 cut(s) 143, 158, 483
FatI CATG 1 cut(s) 167
Fnu4HI GCNGC 1 cut(s) 53
FokI GGATG 1 cut(s) 394
Fsp4HI GCNGC 1 cut(s) 53
FspBI CTAG 1 cut(s) 65
GlaI GCGC 2 cut(s) 204, 435
GluI GCNGC 1 cut(s) 53
GsaI CCCAGC 1 cut(s) 145
HaeIII GGCC 3 cut(s) 428, 459, 548
HapII CCGG 4 cut(s) 138, 425, 429, 456
HhaI GCGC 2 cut(s) 205, 436
Hin1II CATG 1 cut(s) 171
Hin6I GCGC 2 cut(s) 203, 434
HinP1I GCGC 2 cut(s) 203, 434
HinfI GANTC 1 cut(s) 238
HpaII CCGG 4 cut(s) 138, 425, 429, 456
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 2 cut(s) 118, 527
Hpy8I GTNNAC 2 cut(s) 118, 527
HpyCH4III ACNGT 6 cut(s) 115, 124, 233, 316, 497, 524
HpyCH4V TGCA 2 cut(s) 95, 270
HpyF10VI GCNNNNNNNGC 1 cut(s) 440
HpyF3I CTNAG 1 cut(s) 486
Hsp92II CATG 1 cut(s) 171
HspAI GCGC 2 cut(s) 203, 434
KroI GCCGGC 1 cut(s) 424
KroNI GCCGGC 1 cut(s) 426
Kzo9I GATC 1 cut(s) 466
LmnI GCTCC 2 cut(s) 110, 357
Lsp1109I GCAGC 1 cut(s) 39
LweI GCATC 1 cut(s) 190
MabI ACCWGGT 1 cut(s) 331
MaeI CTAG 1 cut(s) 65
MaeIII GTNAC 5 cut(s) 244, 316, 335, 568, 586
MalI GATC 1 cut(s) 468
MboI GATC 1 cut(s) 466
MboII GAAGA 2 cut(s) 68, 461
MflI RGATCY 1 cut(s) 466
MlsI TGGCCA 1 cut(s) 548
MluCI AATT 4 cut(s) 35, 60, 163, 591
MluNI TGGCCA 1 cut(s) 548
MlyI GAGTC 1 cut(s) 247
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 7 cut(s) 66, 145, 170, 296, 371, 433, 514
Mox20I TGGCCA 1 cut(s) 548
MroNI GCCGGC 1 cut(s) 424
MroXI GAANNNNTTC 1 cut(s) 451
MscI TGGCCA 1 cut(s) 548
MseI TTAA 1 cut(s) 38
Msp20I TGGCCA 1 cut(s) 548
MspI CCGG 4 cut(s) 138, 425, 429, 456
MspR9I CCNGG 2 cut(s) 333, 413
MvaI CCWGG 2 cut(s) 333, 413
MwoI GCNNNNNNNGC 1 cut(s) 440
NaeI GCCGGC 1 cut(s) 426
NdeII GATC 1 cut(s) 466
NgoMIV GCCGGC 1 cut(s) 424
NlaIII CATG 1 cut(s) 171
NlaIV GGNNCC 1 cut(s) 454
NmuCI GTSAC 4 cut(s) 244, 335, 568, 586
PdiI GCCGGC 1 cut(s) 426
PdmI GAANNNNTTC 1 cut(s) 451
PkrI GCNGC 1 cut(s) 54
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
PsiI TTATAA 1 cut(s) 287
Psp6I CCWGG 2 cut(s) 331, 411
PspFI CCCAGC 1 cut(s) 141
PspGI CCWGG 2 cut(s) 331, 411
PspN4I GGNNCC 1 cut(s) 454
PspPI GGNCC 2 cut(s) 171, 527
PstNI CAGNNNCTG 1 cut(s) 449
PsuI RGATCY 1 cut(s) 466
RsaI GTAC 2 cut(s) 218, 344
RsaNI GTAC 2 cut(s) 217, 343
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 1 cut(s) 53
Sau3AI GATC 1 cut(s) 466
Sau96I GGNCC 2 cut(s) 171, 527
ScaI AGTACT 1 cut(s) 218
SchI GAGTC 1 cut(s) 247
ScrFI CCNGG 2 cut(s) 333, 413
SetI ASST 9 cut(s) 54, 107, 137, 162, 334, 366, 390, 506, 532
SexAI ACCWGGT 1 cut(s) 331
SfaNI GCATC 1 cut(s) 190
SinI GGWCC 2 cut(s) 171, 527
Sse9I AATT 4 cut(s) 35, 60, 163, 591
SsiI CCGC 1 cut(s) 108
SspMI CTAG 1 cut(s) 65
StyD4I CCNGG 2 cut(s) 331, 411
StyI CCWWGG 1 cut(s) 460
TaaI ACNGT 6 cut(s) 115, 124, 233, 316, 497, 524
TasI AATT 4 cut(s) 35, 60, 163, 591
TatI WGTACW 1 cut(s) 216
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TscAI CASTG 2 cut(s) 160, 238
TseFI GTSAC 4 cut(s) 244, 335, 568, 586
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 4 cut(s) 244, 335, 568, 586
TspDTI ATGAA 4 cut(s) 17, 156, 398, 505
TspRI CASTG 2 cut(s) 160, 238
VpaK11BI GGWCC 2 cut(s) 171, 527
XapI RAATTY 1 cut(s) 60
XmnI GAANNNNTTC 1 cut(s) 451
XspI CTAG 1 cut(s) 65
ZrmI AGTACT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.