MD01G1176400.v1.1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0013317
Physical Location & Seq
Reverse (-)
27707136 .. 27708143
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1176400.v1.1.491

Sequence Viewer

Length: 585 bp
ATGGCAAAGCTGCTTCAAATTCTAGTTTGTGTTCTTCTTGTTCTTGGATTTGCATTGACAAGCTCCGCCACAGTTTACACAGTTGGGGACACCTCCGGCTGGGACATAAGCACTAACCTCAATTCATGGCCCAACGACAAGAAATTCAAAGTCGGCGATGCGCTATCGTTTCAGTACTCATCATCTAACAGTGTGAGTCAAGTGACCAAAGAAAGTTTTGATGTTTGCAACACAACAAAAGTTATAAAGAAATATACAGGAGGAAACACAACAGTTACATTGACAAAACCTGGTGACTGGTACTTTGTGAGTGGGAGCAAGCTGTATTGTTTGGGAGGGATGAAGCTCGTAGTAGAAGTAGAAAACAACCAGGCTTATGCGCCGGCCGGTGTGCCAGAGGCAGCAACTGGTTCCGGCCAAGGGGATCTTCCAAACCCTACTACTAAGAGCAACACTCCCACCTCATCTGCTTTTATCAACTGTGGACCTAATGCCTTTGTGCTGGCCATCTTTGGTCTTATTGCTGTCACGCTATATATGGATGTGACTTTTGGAGATTTTGTATTTGTGATGAAATTATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

195

Amino Acids

20.72

Weight (kDa)

6.18

Isoelectric Point (pI)

16.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 114 1.9e-21 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07475
fragaria_vesca FvH4_7g26810
malus_domestica MD01G1176400.v1.1 MD07G1247200.v1.1
prunus_persica Prupe.2G271300_v2.0.a1
pyrus_communis pycom01g18700 pycom07g22130
rosa_chinensis RchiOBHm_Chr1g0373501
rosa_laevigata RLG00000026821
rosa_multiflora Rmu_co8415803.1_g000001 Rmu_sc0028247.1_g000003
rosa_roxburghii Rroxscaffold_4G00284200
rosa_rugosa Rorug01G0377700
rosa_samantha Rh1AG387000 Rh1BG351300 Rh1CG364100 Rh1DG381800
rosa_wichuraiana Rw1G034830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 245
AciI CCGC 1 cut(s) 66
AclWI GGATC 1 cut(s) 432
AcoI YGGCCR 3 cut(s) 384, 415, 504
AcsI RAATTY 2 cut(s) 18, 143
AfaI GTAC 2 cut(s) 176, 302
AfiI CCNNNNNNNGG 2 cut(s) 99, 420
AgsI TTSAA 2 cut(s) 17, 148
AjnI CCWGG 2 cut(s) 289, 369
AjuI GAANNNNNNNTTGG 2 cut(s) 411, 443
AluBI AGCT 4 cut(s) 10, 63, 322, 346
AluI AGCT 4 cut(s) 10, 63, 322, 346
AlwI GGATC 1 cut(s) 432
AlwNI CAGNNNCTG 1 cut(s) 407
AoxI GGCC 4 cut(s) 128, 384, 415, 504
ApeKI GCWGC 2 cut(s) 10, 401
ApoI RAATTY 2 cut(s) 18, 143
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
AspLEI GCGC 2 cut(s) 163, 382
AspS9I GGNCC 2 cut(s) 129, 485
AsuHPI GGTGA 1 cut(s) 305
AvaII GGWCC 1 cut(s) 485
BalI TGGCCA 1 cut(s) 506
BbvI GCAGC 1 cut(s) 413
BccI CCATC 1 cut(s) 515
BciT130I CCWGG 2 cut(s) 291, 371
BfaI CTAG 1 cut(s) 23
BisI GCNGC 2 cut(s) 11, 402
BlsI GCNGC 2 cut(s) 12, 403
BmcAI AGTACT 1 cut(s) 176
Bme1390I CCNGG 2 cut(s) 291, 371
Bme18I GGWCC 1 cut(s) 485
BmgT120I GGNCC 2 cut(s) 129, 485
BmiI GGNNCC 1 cut(s) 412
BmrFI CCNGG 2 cut(s) 291, 371
BmsI GCATC 1 cut(s) 148
BplI GAGNNNNNCTC 2 cut(s) 439, 471
BsaJI CCNNGG 1 cut(s) 418
BsaXI ACNNNNNCTCC 2 cut(s) 546, 576
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 420
Bse118I RCCGGY 2 cut(s) 382, 386
Bse1I ACTGG 2 cut(s) 302, 412
BseBI CCWGG 2 cut(s) 291, 371
BseDI CCNNGG 1 cut(s) 418
BseGI GGATG 2 cut(s) 345, 547
BseLI CCNNNNNNNGG 2 cut(s) 99, 420
BseNI ACTGG 2 cut(s) 302, 412
BseX3I CGGCCG 1 cut(s) 384
BseXI GCAGC 1 cut(s) 413
BseYI CCCAGC 1 cut(s) 99
Bsh1285I CGRYCG 1 cut(s) 387
BshFI GGCC 4 cut(s) 130, 386, 417, 506
BsiEI CGRYCG 1 cut(s) 387
BsiSI CCGG 4 cut(s) 96, 383, 387, 414
BslFI GGGAC 2 cut(s) 101, 116
BslI CCNNNNNNNGG 2 cut(s) 99, 420
BsmFI GGGAC 2 cut(s) 101, 116
BsnI GGCC 4 cut(s) 130, 386, 417, 506
Bsp143I GATC 1 cut(s) 424
BspACI CCGC 1 cut(s) 66
BspANI GGCC 4 cut(s) 130, 386, 417, 506
BspLI GGNNCC 1 cut(s) 412
BspPI GGATC 1 cut(s) 432
BsrFI RCCGGY 2 cut(s) 382, 386
BsrI ACTGG 2 cut(s) 302, 412
BssAI RCCGGY 2 cut(s) 382, 386
BssECI CCNNGG 1 cut(s) 418
BssMI GATC 1 cut(s) 424
BssT1I CCWWGG 1 cut(s) 418
Bst2UI CCWGG 2 cut(s) 291, 371
Bst4CI ACNGT 5 cut(s) 73, 82, 191, 274, 482
BstC8I GCNNGC 3 cut(s) 320, 384, 504
BstDEI CTNAG 1 cut(s) 444
BstF5I GGATG 2 cut(s) 345, 547
BstHHI GCGC 2 cut(s) 163, 382
BstKTI GATC 1 cut(s) 427
BstMBI GATC 1 cut(s) 424
BstMCI CGRYCG 1 cut(s) 387
BstNI CCWGG 2 cut(s) 291, 371
BstSCI CCNGG 2 cut(s) 289, 369
BstV1I GCAGC 1 cut(s) 413
BstX2I RGATCY 1 cut(s) 424
BstYI RGATCY 1 cut(s) 424
BstZI CGGCCG 1 cut(s) 384
BsuRI GGCC 4 cut(s) 130, 386, 417, 506
BtgZI GCGATG 1 cut(s) 171
BtsCI GGATG 2 cut(s) 345, 547
BtsIMutI CAGTG 1 cut(s) 196
Cac8I GCNNGC 3 cut(s) 320, 384, 504
CaiI CAGNNNCTG 1 cut(s) 407
CfoI GCGC 2 cut(s) 163, 382
Cfr10I RCCGGY 2 cut(s) 382, 386
Cfr13I GGNCC 2 cut(s) 129, 485
CsiI ACCWGGT 1 cut(s) 289
Csp6I GTAC 2 cut(s) 175, 301
CviAII CATG 1 cut(s) 126
CviQI GTAC 2 cut(s) 175, 301
DdeI CTNAG 1 cut(s) 444
DpnI GATC 1 cut(s) 426
DpnII GATC 1 cut(s) 424
EaeI YGGCCR 3 cut(s) 384, 415, 504
EagI CGGCCG 1 cut(s) 384
EciI GGCGGA 1 cut(s) 55
EclXI CGGCCG 1 cut(s) 384
Eco130I CCWWGG 1 cut(s) 418
Eco47I GGWCC 1 cut(s) 485
Eco52I CGGCCG 1 cut(s) 384
EcoRII CCWGG 2 cut(s) 289, 369
EcoT14I CCWWGG 1 cut(s) 418
ErhI CCWWGG 1 cut(s) 418
FaeI CATG 1 cut(s) 129
FaiI YATR 9 cut(s) 107, 127, 245, 255, 378, 535, 537, 539, 580
FalI AAGNNNNNCTT 2 cut(s) 411, 443
FaqI GGGAC 2 cut(s) 101, 116
FatI CATG 1 cut(s) 125
Fnu4HI GCNGC 2 cut(s) 11, 402
FokI GGATG 2 cut(s) 352, 554
Fsp4HI GCNGC 2 cut(s) 11, 402
FspBI CTAG 1 cut(s) 23
GlaI GCGC 2 cut(s) 162, 381
GluI GCNGC 2 cut(s) 11, 402
GsaI CCCAGC 1 cut(s) 103
HaeIII GGCC 4 cut(s) 130, 386, 417, 506
HapII CCGG 4 cut(s) 96, 383, 387, 414
HhaI GCGC 2 cut(s) 163, 382
Hin1II CATG 1 cut(s) 129
Hin6I GCGC 2 cut(s) 161, 380
HinP1I GCGC 2 cut(s) 161, 380
HinfI GANTC 1 cut(s) 196
HpaII CCGG 4 cut(s) 96, 383, 387, 414
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 2 cut(s) 76, 485
Hpy8I GTNNAC 2 cut(s) 76, 485
HpyCH4III ACNGT 5 cut(s) 73, 82, 191, 274, 482
HpyCH4V TGCA 2 cut(s) 53, 228
HpyF3I CTNAG 1 cut(s) 444
Hsp92II CATG 1 cut(s) 129
HspAI GCGC 2 cut(s) 161, 380
KroI GCCGGC 1 cut(s) 382
KroNI GCCGGC 1 cut(s) 384
Kzo9I GATC 1 cut(s) 424
LmnI GCTCC 2 cut(s) 68, 315
Lsp1109I GCAGC 1 cut(s) 413
LweI GCATC 1 cut(s) 148
MabI ACCWGGT 1 cut(s) 289
MaeI CTAG 1 cut(s) 23
MaeIII GTNAC 5 cut(s) 202, 274, 293, 526, 544
MalI GATC 1 cut(s) 426
MboI GATC 1 cut(s) 424
MboII GAAGA 2 cut(s) 26, 419
MflI RGATCY 1 cut(s) 424
MlsI TGGCCA 1 cut(s) 506
MluCI AATT 4 cut(s) 18, 121, 143, 575
MluNI TGGCCA 1 cut(s) 506
MlyI GAGTC 1 cut(s) 205
MnlI CCTC 6 cut(s) 103, 128, 254, 329, 391, 472
Mox20I TGGCCA 1 cut(s) 506
MroNI GCCGGC 1 cut(s) 382
MscI TGGCCA 1 cut(s) 506
Msp20I TGGCCA 1 cut(s) 506
MspI CCGG 4 cut(s) 96, 383, 387, 414
MspR9I CCNGG 2 cut(s) 291, 371
MvaI CCWGG 2 cut(s) 291, 371
NaeI GCCGGC 1 cut(s) 384
NdeII GATC 1 cut(s) 424
NgoMIV GCCGGC 1 cut(s) 382
NlaIII CATG 1 cut(s) 129
NlaIV GGNNCC 1 cut(s) 412
NmuCI GTSAC 4 cut(s) 202, 293, 526, 544
PdiI GCCGGC 1 cut(s) 384
PkrI GCNGC 2 cut(s) 12, 403
PleI GAGTC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 204
PsiI TTATAA 1 cut(s) 245
Psp6I CCWGG 2 cut(s) 289, 369
PspFI CCCAGC 1 cut(s) 99
PspGI CCWGG 2 cut(s) 289, 369
PspN4I GGNNCC 1 cut(s) 412
PspPI GGNCC 2 cut(s) 129, 485
PstNI CAGNNNCTG 1 cut(s) 407
PsuI RGATCY 1 cut(s) 424
RsaI GTAC 2 cut(s) 176, 302
RsaNI GTAC 2 cut(s) 175, 301
SatI GCNGC 2 cut(s) 11, 402
Sau3AI GATC 1 cut(s) 424
Sau96I GGNCC 2 cut(s) 129, 485
ScaI AGTACT 1 cut(s) 176
SchI GAGTC 1 cut(s) 205
ScrFI CCNGG 2 cut(s) 291, 371
SetI ASST 9 cut(s) 12, 65, 95, 120, 292, 324, 348, 464, 490
SexAI ACCWGGT 1 cut(s) 289
SfaNI GCATC 1 cut(s) 148
SinI GGWCC 1 cut(s) 485
Sse9I AATT 4 cut(s) 18, 121, 143, 575
SsiI CCGC 1 cut(s) 66
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 2 cut(s) 289, 369
StyI CCWWGG 1 cut(s) 418
TaaI ACNGT 5 cut(s) 73, 82, 191, 274, 482
TasI AATT 4 cut(s) 18, 121, 143, 575
TatI WGTACW 1 cut(s) 174
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 4 cut(s) 202, 293, 526, 544
TseI GCWGC 2 cut(s) 10, 401
Tsp45I GTSAC 4 cut(s) 202, 293, 526, 544
TspDTI ATGAA 2 cut(s) 114, 356
TspRI CASTG 1 cut(s) 196
VpaK11BI GGWCC 1 cut(s) 485
XapI RAATTY 2 cut(s) 18, 143
XspI CTAG 1 cut(s) 23
ZrmI AGTACT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.