pycom07g22130

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0013317
Physical Location & Seq
Reverse (-)
23535725 .. 23536547
823 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g22130.1

Sequence Viewer

Length: 537 bp
ATGGCAAAGCAGCCTCAAATTCTAGCTTGTGTTCTTGTTGTCCTTGGATTTGCATTAACAAGCTCCGCCTCAATTTACATAGTTGGGGGCACCTCCGGCTGGGACCCAAGCACCGACCTCAATTCATGGTCCAGTGACAAGAAATTTAACGTCGGCGATGTTCTGTGGTTTCAGTACTCATCATCTAATAGTGTGTGCCAAGTGACCAAAGAAAGCTTTGATGCTTGCAACAAAGCAAAAGTTATAGAAACTTATACAGGAGGAAACACAACAGTCACGTTGACAAAACCTGGTGACTGGTATTTTGTGAGTGGAAACAAGCTATATTGCTTGGGAGGAATGAAGCTCATGGCAGAAGTAGAAAACAACCAGGATTATGCACCGATCGGCGCACCAGAGGCAGCAACTGGTTCCGACCTTCCAAACCCTTCTTCTAAGGGCAACATTCCTACTTCAGATGCTTTCAGCCATGCAGGACCTAATGCCTATGTGTTGGCCATCTTTGGTCTATTGCTGCCATGCTATATATGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

179

Amino Acids

19.03

Weight (kDa)

4.78

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 114 2.8e-21 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07475
fragaria_vesca FvH4_7g26810
malus_domestica MD01G1176400.v1.1 MD07G1247200.v1.1
prunus_persica Prupe.2G271300_v2.0.a1
pyrus_communis pycom01g18700 pycom07g22130
rosa_chinensis RchiOBHm_Chr1g0373501
rosa_laevigata RLG00000026821
rosa_multiflora Rmu_co8415803.1_g000001 Rmu_sc0028247.1_g000003
rosa_roxburghii Rroxscaffold_4G00284200
rosa_rugosa Rorug01G0377700
rosa_samantha Rh1AG387000 Rh1BG351300 Rh1CG364100 Rh1DG381800
rosa_wichuraiana Rw1G034830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 89
AciI CCGC 1 cut(s) 66
AcoI YGGCCR 1 cut(s) 495
AcsI RAATTY 2 cut(s) 18, 143
AcuI CTGAAG 1 cut(s) 438
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 99
AjnI CCWGG 2 cut(s) 289, 369
AjuI GAANNNNNNNTTGG 2 cut(s) 415, 447
AluBI AGCT 5 cut(s) 26, 63, 216, 322, 346
AluI AGCT 5 cut(s) 26, 63, 216, 322, 346
AlwNI CAGNNNCTG 1 cut(s) 407
AoxI GGCC 1 cut(s) 495
ApeKI GCWGC 3 cut(s) 10, 401, 514
ApoI RAATTY 2 cut(s) 18, 143
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
AspLEI GCGC 1 cut(s) 392
AspS9I GGNCC 3 cut(s) 103, 129, 476
AsuHPI GGTGA 1 cut(s) 305
AvaII GGWCC 3 cut(s) 103, 129, 476
BaeGI GKGCMC 1 cut(s) 92
BalI TGGCCA 1 cut(s) 497
BanI GGYRCC 1 cut(s) 89
BbvI GCAGC 3 cut(s) 22, 413, 501
BccI CCATC 1 cut(s) 506
BciT130I CCWGG 2 cut(s) 291, 371
BfaI CTAG 1 cut(s) 23
BisI GCNGC 3 cut(s) 11, 402, 515
BlsI GCNGC 3 cut(s) 12, 403, 516
BmcAI AGTACT 1 cut(s) 176
Bme1390I CCNGG 2 cut(s) 291, 371
Bme18I GGWCC 3 cut(s) 103, 129, 476
BmgT120I GGNCC 3 cut(s) 103, 129, 476
BmiI GGNNCC 4 cut(s) 91, 104, 105, 412
BmrFI CCNGG 2 cut(s) 291, 371
BmsI GCATC 2 cut(s) 211, 448
BsaJI CCNNGG 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 99
Bse1I ACTGG 3 cut(s) 132, 302, 412
BseBI CCWGG 2 cut(s) 291, 371
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 1 cut(s) 537
BseLI CCNNNNNNNGG 1 cut(s) 99
BseNI ACTGG 3 cut(s) 132, 302, 412
BseSI GKGCMC 1 cut(s) 92
BseXI GCAGC 3 cut(s) 22, 413, 501
BseYI CCCAGC 1 cut(s) 99
Bsh1285I CGRYCG 1 cut(s) 387
BshFI GGCC 1 cut(s) 497
BshNI GGYRCC 1 cut(s) 89
BsiEI CGRYCG 1 cut(s) 387
BsiSI CCGG 1 cut(s) 96
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 99
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 1 cut(s) 497
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 1 cut(s) 384
BspACI CCGC 1 cut(s) 66
BspANI GGCC 1 cut(s) 497
BspLI GGNNCC 4 cut(s) 91, 104, 105, 412
BspT107I GGYRCC 1 cut(s) 89
BsrI ACTGG 3 cut(s) 132, 302, 412
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 1 cut(s) 384
BssT1I CCWWGG 1 cut(s) 43
Bst2UI CCWGG 2 cut(s) 291, 371
Bst4CI ACNGT 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 226
BstDEI CTNAG 1 cut(s) 435
BstF5I GGATG 1 cut(s) 537
BstHHI GCGC 1 cut(s) 392
BstKTI GATC 1 cut(s) 387
BstMBI GATC 1 cut(s) 384
BstMCI CGRYCG 1 cut(s) 387
BstMWI GCNNNNNNNGC 2 cut(s) 96, 398
BstNI CCWGG 2 cut(s) 291, 371
BstSCI CCNGG 2 cut(s) 289, 369
BstSLI GKGCMC 1 cut(s) 92
BstV1I GCAGC 3 cut(s) 22, 413, 501
BsuRI GGCC 1 cut(s) 497
BtgZI GCGATG 1 cut(s) 171
BtsCI GGATG 1 cut(s) 537
BtsIMutI CAGTG 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 226
CaiI CAGNNNCTG 1 cut(s) 407
CfoI GCGC 1 cut(s) 392
Cfr13I GGNCC 3 cut(s) 103, 129, 476
CsiI ACCWGGT 1 cut(s) 289
Csp6I GTAC 1 cut(s) 175
CviAII CATG 4 cut(s) 126, 349, 470, 519
CviJI RGCY 9 cut(s) 13, 26, 63, 99, 216, 322, 346, 468, 497
CviKI_1 RGCY 9 cut(s) 13, 26, 63, 99, 216, 322, 346, 468, 497
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 1 cut(s) 435
DpnI GATC 1 cut(s) 386
DpnII GATC 1 cut(s) 384
EaeI YGGCCR 1 cut(s) 495
EciI GGCGGA 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 43
Eco47I GGWCC 3 cut(s) 103, 129, 476
Eco57I CTGAAG 1 cut(s) 438
EcoO109I RGGNCCY 2 cut(s) 103, 476
EcoRII CCWGG 2 cut(s) 289, 369
EcoT14I CCWWGG 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 43
FaeI CATG 4 cut(s) 129, 352, 473, 522
FaqI GGGAC 1 cut(s) 116
FatI CATG 4 cut(s) 125, 348, 469, 518
Fnu4HI GCNGC 3 cut(s) 11, 402, 515
Fsp4HI GCNGC 3 cut(s) 11, 402, 515
FspBI CTAG 1 cut(s) 23
GlaI GCGC 1 cut(s) 391
GluI GCNGC 3 cut(s) 11, 402, 515
GsaI CCCAGC 1 cut(s) 103
HaeIII GGCC 1 cut(s) 497
HapII CCGG 1 cut(s) 96
HhaI GCGC 1 cut(s) 392
Hin1II CATG 4 cut(s) 129, 352, 473, 522
Hin6I GCGC 1 cut(s) 390
HinP1I GCGC 1 cut(s) 390
HincII GTYRAC 1 cut(s) 282
HindII GTYRAC 1 cut(s) 282
HindIII AAGCTT 1 cut(s) 214
HpaII CCGG 1 cut(s) 96
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 1 cut(s) 282
Hpy188I TCNGA 2 cut(s) 415, 457
Hpy8I GTNNAC 1 cut(s) 282
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 2 cut(s) 428, 438
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4IV ACGT 2 cut(s) 150, 278
HpyCH4V TGCA 4 cut(s) 53, 228, 380, 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 398
HpyF3I CTNAG 1 cut(s) 435
HpySE526I ACGT 2 cut(s) 150, 278
Hsp92II CATG 4 cut(s) 129, 352, 473, 522
HspAI GCGC 1 cut(s) 390
KflI GGGWCCC 1 cut(s) 103
Kzo9I GATC 1 cut(s) 384
LmnI GCTCC 1 cut(s) 68
Lsp1109I GCAGC 3 cut(s) 22, 413, 501
LweI GCATC 2 cut(s) 211, 448
MabI ACCWGGT 1 cut(s) 289
MaeI CTAG 1 cut(s) 23
MaeII ACGT 2 cut(s) 150, 278
MaeIII GTNAC 4 cut(s) 134, 202, 274, 293
MalI GATC 1 cut(s) 386
MboI GATC 1 cut(s) 384
MboII GAAGA 1 cut(s) 423
MhlI GDGCHC 1 cut(s) 92
MlsI TGGCCA 1 cut(s) 497
MluCI AATT 4 cut(s) 18, 72, 121, 143
MluNI TGGCCA 1 cut(s) 497
MmeI TCCRAC 1 cut(s) 438
MnlI CCTC 7 cut(s) 24, 79, 103, 128, 254, 329, 391
Mox20I TGGCCA 1 cut(s) 497
MscI TGGCCA 1 cut(s) 497
MseI TTAA 2 cut(s) 56, 147
Msp20I TGGCCA 1 cut(s) 497
MspI CCGG 1 cut(s) 96
MspR9I CCNGG 2 cut(s) 291, 371
MvaI CCWGG 2 cut(s) 291, 371
MwoI GCNNNNNNNGC 2 cut(s) 96, 398
NdeII GATC 1 cut(s) 384
NlaIII CATG 4 cut(s) 129, 352, 473, 522
NlaIV GGNNCC 4 cut(s) 91, 104, 105, 412
NmuCI GTSAC 4 cut(s) 134, 202, 274, 293
PkrI GCNGC 3 cut(s) 12, 403, 516
Ple19I CGATCG 1 cut(s) 387
PpuMI RGGWCCY 2 cut(s) 103, 476
Psp5II RGGWCCY 2 cut(s) 103, 476
Psp6I CCWGG 2 cut(s) 289, 369
PspFI CCCAGC 1 cut(s) 99
PspGI CCWGG 2 cut(s) 289, 369
PspN4I GGNNCC 4 cut(s) 91, 104, 105, 412
PspPI GGNCC 3 cut(s) 103, 129, 476
PspPPI RGGWCCY 2 cut(s) 103, 476
PstNI CAGNNNCTG 1 cut(s) 407
PvuI CGATCG 1 cut(s) 387
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SaqAI TTAA 2 cut(s) 56, 147
SatI GCNGC 3 cut(s) 11, 402, 515
Sau3AI GATC 1 cut(s) 384
Sau96I GGNCC 3 cut(s) 103, 129, 476
ScaI AGTACT 1 cut(s) 176
ScrFI CCNGG 2 cut(s) 291, 371
SduI GDGCHC 1 cut(s) 92
SexAI ACCWGGT 1 cut(s) 289
SfaNI GCATC 2 cut(s) 211, 448
SinI GGWCC 3 cut(s) 103, 129, 476
Sse9I AATT 4 cut(s) 18, 72, 121, 143
SsiI CCGC 1 cut(s) 66
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 2 cut(s) 289, 369
StyI CCWWGG 1 cut(s) 43
TaaI ACNGT 1 cut(s) 274
TaiI ACGT 2 cut(s) 153, 281
TasI AATT 4 cut(s) 18, 72, 121, 143
TatI WGTACW 1 cut(s) 174
Tru1I TTAA 2 cut(s) 56, 147
Tru9I TTAA 2 cut(s) 56, 147
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 4 cut(s) 134, 202, 274, 293
TseI GCWGC 3 cut(s) 10, 401, 514
Tsp45I GTSAC 4 cut(s) 134, 202, 274, 293
TspDTI ATGAA 2 cut(s) 114, 356
TspRI CASTG 1 cut(s) 139
VpaK11BI GGWCC 3 cut(s) 103, 129, 476
XapI RAATTY 2 cut(s) 18, 143
XcmI CCANNNNNNNNNTGG 1 cut(s) 525
XspI CTAG 1 cut(s) 23
ZrmI AGTACT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.