Rroxscaffold_4G00284200

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0013317
Physical Location & Seq
Forward (+)
5865680 .. 5866496
817 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00284200.1

Sequence Viewer

Length: 558 bp
ATGGCAAAGCTTCTTCTGGTTTGTGGTCTTGTGGTTCTTGGATTTGCACTAACATGCTATGCTGCCACAATCTACACGGTGGGTGGTAACTCCGGCTGGGACATAAGCACTGATCTCCCTACATGGGCCTCAGACAAGAAGTTCGTCGTCGGCGATGTTCTATGGTTCCAGTATTCATCATCAAACAGCGTCAACCAAGTGACCAAAGAAAACTTCGAGGGCTGCAACACGACCAATGTAGTGGAGTCATATACCGGAGGGAACACAACGGTCACATTGACAAGACCTGGTGAGTGGTATTTTGTGAGTGGTAACAAGCTCTATTGCATGGGAGGGATGAAGCTTCAAGTACCCGTGCAAGGTAACCAACTATCTTATGCGCCGGCCAGTGCACCGCAGTCGTCAACCGGTTCGGACCAAGGGCCTAACTCTCGTCCGAACAACCCTTCTTCTAAGAACAACACTCCCACTTCAGCTGGGCTCAGCATCCATGGCGGTTATGATAATGTTCTTGTCTTGGCTGTTTTTGGTACTTTAGCTGCCATGATATGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

185

Amino Acids

19.66

Weight (kDa)

5.67

Isoelectric Point (pI)

27.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 113 2.7e-21 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07475
fragaria_vesca FvH4_7g26810
malus_domestica MD01G1176400.v1.1 MD07G1247200.v1.1
prunus_persica Prupe.2G271300_v2.0.a1
pyrus_communis pycom01g18700 pycom07g22130
rosa_chinensis RchiOBHm_Chr1g0373501
rosa_laevigata RLG00000026821
rosa_multiflora Rmu_co8415803.1_g000001 Rmu_sc0028247.1_g000003
rosa_roxburghii Rroxscaffold_4G00284200
rosa_rugosa Rorug01G0377700
rosa_samantha Rh1AG387000 Rh1BG351300 Rh1CG364100 Rh1DG381800
rosa_wichuraiana Rw1G034830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 549
AciI CCGC 2 cut(s) 395, 495
AcoI YGGCCR 1 cut(s) 384
AcuI CTGAAG 1 cut(s) 456
AfaI GTAC 2 cut(s) 351, 532
AfiI CCNNNNNNNGG 3 cut(s) 124, 359, 549
AgeI ACCGGT 1 cut(s) 407
AgsI TTSAA 1 cut(s) 347
AjnI CCWGG 1 cut(s) 286
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AluBI AGCT 5 cut(s) 10, 319, 343, 476, 539
AluI AGCT 5 cut(s) 10, 319, 343, 476, 539
Alw21I GWGCWC 1 cut(s) 394
Alw44I GTGCAC 1 cut(s) 390
AoxI GGCC 3 cut(s) 126, 384, 422
ApaLI GTGCAC 1 cut(s) 390
ApeKI GCWGC 3 cut(s) 62, 222, 539
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AsiGI ACCGGT 1 cut(s) 407
AspLEI GCGC 1 cut(s) 382
AspS9I GGNCC 3 cut(s) 126, 415, 422
AsuHPI GGTGA 1 cut(s) 302
AvaII GGWCC 1 cut(s) 415
BaeGI GKGCMC 1 cut(s) 394
BanII GRGCYC 1 cut(s) 483
Bbv12I GWGCWC 1 cut(s) 394
BbvI GCAGC 3 cut(s) 49, 209, 526
BcgI CGANNNNNNTGC 2 cut(s) 381, 415
BciT130I CCWGG 1 cut(s) 288
BisI GCNGC 3 cut(s) 63, 223, 540
BlpI GCTNAGC 1 cut(s) 482
BlsI GCNGC 3 cut(s) 64, 224, 541
Bme1390I CCNGG 1 cut(s) 288
Bme18I GGWCC 1 cut(s) 415
BmgT120I GGNCC 3 cut(s) 126, 415, 422
BmiI GGNNCC 1 cut(s) 167
BmrFI CCNGG 1 cut(s) 288
BmsI GCATC 1 cut(s) 495
Bpu1102I GCTNAGC 1 cut(s) 482
BsaJI CCNNGG 2 cut(s) 418, 490
BsaWI WCCGGW 2 cut(s) 254, 407
Bsc4I CCNNNNNNNGG 3 cut(s) 124, 359, 549
Bse118I RCCGGY 2 cut(s) 382, 407
Bse1I ACTGG 2 cut(s) 169, 387
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 2 cut(s) 418, 490
BseGI GGATG 3 cut(s) 342, 486, 558
BseLI CCNNNNNNNGG 3 cut(s) 124, 359, 549
BseMII CTCAG 2 cut(s) 144, 496
BseNI ACTGG 2 cut(s) 169, 387
BseSI GKGCMC 1 cut(s) 394
BseXI GCAGC 3 cut(s) 49, 209, 526
BseYI CCCAGC 2 cut(s) 96, 476
BshFI GGCC 3 cut(s) 128, 386, 424
BshTI ACCGGT 1 cut(s) 407
BsiHKAI GWGCWC 1 cut(s) 394
BsiSI CCGG 4 cut(s) 93, 255, 383, 408
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 3 cut(s) 124, 359, 549
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 3 cut(s) 128, 386, 424
Bsp1286I GDGCHC 2 cut(s) 394, 483
Bsp143I GATC 1 cut(s) 112
Bsp1720I GCTNAGC 1 cut(s) 482
Bsp19I CCATGG 1 cut(s) 490
BspACI CCGC 2 cut(s) 395, 495
BspANI GGCC 3 cut(s) 128, 386, 424
BspCNI CTCAG 2 cut(s) 143, 495
BspLI GGNNCC 1 cut(s) 167
BsrFI RCCGGY 2 cut(s) 382, 407
BsrI ACTGG 2 cut(s) 169, 387
BssAI RCCGGY 2 cut(s) 382, 407
BssECI CCNNGG 2 cut(s) 418, 490
BssMI GATC 1 cut(s) 112
BssT1I CCWWGG 2 cut(s) 418, 490
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 2 cut(s) 79, 271
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 3 cut(s) 130, 453, 482
BstDSI CCRYGG 1 cut(s) 490
BstEII GGTNACC 1 cut(s) 362
BstF5I GGATG 3 cut(s) 342, 486, 558
BstHHI GCGC 1 cut(s) 382
BstKTI GATC 1 cut(s) 115
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 1 cut(s) 492
BstNI CCWGG 1 cut(s) 288
BstNSI RCATGY 1 cut(s) 57
BstPI GGTNACC 1 cut(s) 362
BstSCI CCNGG 1 cut(s) 286
BstSLI GKGCMC 1 cut(s) 394
BstV1I GCAGC 3 cut(s) 49, 209, 526
BstXI CCANNNNNNTGG 1 cut(s) 241
BsuRI GGCC 3 cut(s) 128, 386, 424
BtgI CCRYGG 1 cut(s) 490
BtgZI GCGATG 1 cut(s) 168
BtsCI GGATG 3 cut(s) 342, 486, 558
BtsIMutI CAGTG 2 cut(s) 108, 394
Cac8I GCNNGC 1 cut(s) 384
CfoI GCGC 1 cut(s) 382
Cfr10I RCCGGY 2 cut(s) 382, 407
Cfr13I GGNCC 3 cut(s) 126, 415, 422
CseI GACGC 1 cut(s) 178
CsiI ACCWGGT 1 cut(s) 286
Csp6I GTAC 2 cut(s) 350, 531
CspAI ACCGGT 1 cut(s) 407
CviAII CATG 5 cut(s) 54, 123, 328, 491, 544
CviQI GTAC 2 cut(s) 350, 531
DdeI CTNAG 3 cut(s) 130, 453, 482
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
EaeI YGGCCR 1 cut(s) 384
Eco130I CCWWGG 2 cut(s) 418, 490
Eco24I GRGCYC 1 cut(s) 483
Eco47I GGWCC 1 cut(s) 415
Eco57I CTGAAG 1 cut(s) 456
Eco91I GGTNACC 1 cut(s) 362
EcoO109I RGGNCCY 1 cut(s) 422
EcoO65I GGTNACC 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 286
EcoT14I CCWWGG 2 cut(s) 418, 490
EcoT38I GRGCYC 1 cut(s) 483
ErhI CCWWGG 2 cut(s) 418, 490
FaeI CATG 5 cut(s) 57, 126, 331, 494, 547
FaqI GGGAC 1 cut(s) 113
FatI CATG 5 cut(s) 53, 122, 327, 490, 543
Fnu4HI GCNGC 3 cut(s) 63, 223, 540
FokI GGATG 2 cut(s) 349, 473
FriOI GRGCYC 1 cut(s) 483
Fsp4HI GCNGC 3 cut(s) 63, 223, 540
GlaI GCGC 1 cut(s) 381
GluI GCNGC 3 cut(s) 63, 223, 540
GsaI CCCAGC 2 cut(s) 100, 480
HaeIII GGCC 3 cut(s) 128, 386, 424
HapII CCGG 4 cut(s) 93, 255, 383, 408
HgaI GACGC 1 cut(s) 178
HhaI GCGC 1 cut(s) 382
Hin1II CATG 5 cut(s) 57, 126, 331, 494, 547
Hin6I GCGC 1 cut(s) 380
HinP1I GCGC 1 cut(s) 380
HincII GTYRAC 2 cut(s) 193, 405
HindII GTYRAC 2 cut(s) 193, 405
HindIII AAGCTT 2 cut(s) 8, 341
HinfI GANTC 1 cut(s) 245
HpaII CCGG 4 cut(s) 93, 255, 383, 408
HphI GGTGA 1 cut(s) 302
Hpy166II GTNNAC 3 cut(s) 193, 392, 405
Hpy188I TCNGA 3 cut(s) 133, 415, 438
Hpy8I GTNNAC 3 cut(s) 193, 392, 405
Hpy99I CGWCG 2 cut(s) 149, 152
HpyAV CCTTC 1 cut(s) 456
HpyCH4III ACNGT 2 cut(s) 79, 271
HpyCH4V TGCA 5 cut(s) 47, 225, 327, 358, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 492
HpyF3I CTNAG 3 cut(s) 130, 453, 482
Hsp92II CATG 5 cut(s) 57, 126, 331, 494, 547
HspAI GCGC 1 cut(s) 380
KroI GCCGGC 1 cut(s) 382
KroNI GCCGGC 1 cut(s) 384
Kzo9I GATC 1 cut(s) 112
Lsp1109I GCAGC 3 cut(s) 49, 209, 526
LweI GCATC 1 cut(s) 495
MabI ACCWGGT 1 cut(s) 286
MaeIII GTNAC 5 cut(s) 86, 199, 271, 311, 362
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 2 cut(s) 5, 441
MhlI GDGCHC 2 cut(s) 394, 483
MlyI GAGTC 1 cut(s) 254
MnlI CCTC 4 cut(s) 139, 211, 251, 326
MroNI GCCGGC 1 cut(s) 382
MslI CAYNNNNRTG 1 cut(s) 52
MspA1I CMGCKG 1 cut(s) 476
MspI CCGG 4 cut(s) 93, 255, 383, 408
MspR9I CCNGG 1 cut(s) 288
MvaI CCWGG 1 cut(s) 288
MwoI GCNNNNNNNGC 1 cut(s) 492
NaeI GCCGGC 1 cut(s) 384
NcoI CCATGG 1 cut(s) 490
NdeII GATC 1 cut(s) 112
NgoMIV GCCGGC 1 cut(s) 382
NlaIII CATG 5 cut(s) 57, 126, 331, 494, 547
NlaIV GGNNCC 1 cut(s) 167
NmuCI GTSAC 2 cut(s) 199, 271
NspI RCATGY 1 cut(s) 57
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PdiI GCCGGC 1 cut(s) 384
PflMI CCANNNNNTGG 1 cut(s) 549
PinAI ACCGGT 1 cut(s) 407
PkrI GCNGC 3 cut(s) 64, 224, 541
PleI GAGTC 1 cut(s) 253
PpsI GAGTC 1 cut(s) 253
Psp6I CCWGG 1 cut(s) 286
PspEI GGTNACC 1 cut(s) 362
PspFI CCCAGC 2 cut(s) 96, 476
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 1 cut(s) 167
PspPI GGNCC 3 cut(s) 126, 415, 422
PvuII CAGCTG 1 cut(s) 476
RsaI GTAC 2 cut(s) 351, 532
RsaNI GTAC 2 cut(s) 350, 531
RseI CAYNNNNRTG 1 cut(s) 52
SatI GCNGC 3 cut(s) 63, 223, 540
Sau3AI GATC 1 cut(s) 112
Sau96I GGNCC 3 cut(s) 126, 415, 422
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 1 cut(s) 288
SduI GDGCHC 2 cut(s) 394, 483
SetI ASST 7 cut(s) 12, 289, 321, 345, 364, 478, 541
SexAI ACCWGGT 1 cut(s) 286
SfaNI GCATC 1 cut(s) 495
SinI GGWCC 1 cut(s) 415
SmiMI CAYNNNNRTG 1 cut(s) 52
SsiI CCGC 2 cut(s) 395, 495
StyD4I CCNGG 1 cut(s) 286
StyI CCWWGG 2 cut(s) 418, 490
TaaI ACNGT 2 cut(s) 79, 271
TaqI TCGA 1 cut(s) 216
TscAI CASTG 2 cut(s) 115, 394
TseFI GTSAC 2 cut(s) 199, 271
TseI GCWGC 3 cut(s) 62, 222, 539
Tsp45I GTSAC 2 cut(s) 199, 271
TspDTI ATGAA 2 cut(s) 165, 353
TspRI CASTG 2 cut(s) 115, 394
Van91I CCANNNNNTGG 1 cut(s) 549
VneI GTGCAC 1 cut(s) 390
VpaK11BI GGWCC 1 cut(s) 415
XceI RCATGY 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.