Rorug01G0377700

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0013317
Physical Location & Seq
Reverse (-)
49136972 .. 49139228
2257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0377700.1

Sequence Viewer

Length: 270 bp
ATGGAAAGCAGAAAGGTGAATAGCAGGAGCAACTTCCAGATGCCCCTTCACTACCCTAGGTACACCAGAAAGGACTACCAGGACATGCCCGAGTGGAAGCTCGACCGCCTTCTTGCCGATTATGGGTTGCCGGCTCACGGTGACTTGGCTTACAAGAGAGACTTTGCAATGGGTGCCTTTCTCTGGCCTGATCATTGTCGCCATGGTCCCAATCCAAGCCATTGTAATTCATACAATAACCCTAGCATTAAGGCGGATGCTTCCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

89

Amino Acids

10.41

Weight (kDa)

8.62

Isoelectric Point (pI)

39.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7722 PF24847 18 - 63 5.8e-28 Domain of unknown function (DUF7722)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07475
fragaria_vesca FvH4_7g26810
malus_domestica MD01G1176400.v1.1 MD07G1247200.v1.1
prunus_persica Prupe.2G271300_v2.0.a1
pyrus_communis pycom01g18700 pycom07g22130
rosa_chinensis RchiOBHm_Chr1g0373501
rosa_laevigata RLG00000026821
rosa_multiflora Rmu_co8415803.1_g000001 Rmu_sc0028247.1_g000003
rosa_roxburghii Rroxscaffold_4G00284200
rosa_rugosa Rorug01G0377700
rosa_samantha Rh1AG387000 Rh1BG351300 Rh1CG364100 Rh1DG381800
rosa_wichuraiana Rw1G034830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 173
AciI CCGC 2 cut(s) 106, 254
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 3 cut(s) 123, 137, 183
AjnI CCWGG 1 cut(s) 78
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw26I GTCTC 1 cut(s) 153
Ama87I CYCGRG 1 cut(s) 89
AoxI GGCC 1 cut(s) 185
AspA2I CCTAGG 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 206
AsuHPI GGTGA 2 cut(s) 28, 152
AvaI CYCGRG 1 cut(s) 89
AvaII GGWCC 1 cut(s) 206
AvrII CCTAGG 1 cut(s) 56
BanI GGYRCC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 80
BclI TGATCA 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 2 cut(s) 57, 243
BlnI CCTAGG 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 80
Bme18I GGWCC 1 cut(s) 206
BmeT110I CYCGRG 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 2 cut(s) 175, 208
BmrFI CCNGG 1 cut(s) 80
BmsI GCATC 2 cut(s) 30, 247
BsaJI CCNNGG 2 cut(s) 56, 202
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 137, 183
Bse118I RCCGGY 1 cut(s) 130
Bse3DI GCAATG 1 cut(s) 174
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 2 cut(s) 56, 202
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 3 cut(s) 123, 137, 183
BseMI GCAATG 1 cut(s) 174
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 1 cut(s) 187
BshNI GGYRCC 1 cut(s) 173
BsiEI CGRYCG 1 cut(s) 106
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 131
BslFI GGGAC 1 cut(s) 192
BslI CCNNNNNNNGG 3 cut(s) 123, 137, 183
BsmAI GTCTC 1 cut(s) 153
BsmFI GGGAC 1 cut(s) 192
BsnI GGCC 1 cut(s) 187
BsoBI CYCGRG 1 cut(s) 89
Bsp143I GATC 1 cut(s) 190
Bsp19I CCATGG 1 cut(s) 202
BspACI CCGC 2 cut(s) 106, 254
BspANI GGCC 1 cut(s) 187
BspLI GGNNCC 2 cut(s) 175, 208
BspT107I GGYRCC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 174
BsrFI RCCGGY 1 cut(s) 130
BssAI RCCGGY 1 cut(s) 130
BssECI CCNNGG 2 cut(s) 56, 202
BssMI GATC 1 cut(s) 190
BssT1I CCWWGG 2 cut(s) 56, 202
Bst2UI CCWGG 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 140
BstAPI GCANNNNNTGC 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 132
BstDSI CCRYGG 1 cut(s) 202
BstF5I GGATG 1 cut(s) 262
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 1 cut(s) 190
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNI CCWGG 1 cut(s) 80
BstNSI RCATGY 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 78
BsuRI GGCC 1 cut(s) 187
BtgI CCRYGG 1 cut(s) 202
BtsCI GGATG 1 cut(s) 262
Cac8I GCNNGC 1 cut(s) 132
Cfr10I RCCGGY 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 206
Csp6I GTAC 1 cut(s) 61
CviAII CATG 2 cut(s) 85, 203
CviJI RGCY 5 cut(s) 100, 134, 149, 187, 219
CviKI_1 RGCY 5 cut(s) 100, 134, 149, 187, 219
CviQI GTAC 1 cut(s) 61
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
EciI GGCGGA 1 cut(s) 269
Eco130I CCWWGG 2 cut(s) 56, 202
Eco47I GGWCC 1 cut(s) 206
Eco88I CYCGRG 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 78
EcoT14I CCWWGG 2 cut(s) 56, 202
ErhI CCWWGG 2 cut(s) 56, 202
FaeI CATG 2 cut(s) 88, 206
FaiI YATR 4 cut(s) 86, 123, 204, 232
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FaqI GGGAC 1 cut(s) 192
FatI CATG 2 cut(s) 84, 202
FbaI TGATCA 1 cut(s) 190
FspBI CTAG 2 cut(s) 57, 243
HaeIII GGCC 1 cut(s) 187
HapII CCGG 1 cut(s) 131
Hin1II CATG 2 cut(s) 88, 206
HpaII CCGG 1 cut(s) 131
HphI GGTGA 2 cut(s) 28, 152
Hpy166II GTNNAC 1 cut(s) 63
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 1 cut(s) 63
HpyAV CCTTC 2 cut(s) 56, 119
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4V TGCA 1 cut(s) 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
Hsp92II CATG 2 cut(s) 88, 206
KroI GCCGGC 1 cut(s) 130
KroNI GCCGGC 1 cut(s) 132
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 8 cut(s) 10, 50, 65, 79, 92, 144, 169, 201
LweI GCATC 2 cut(s) 30, 247
MaeI CTAG 2 cut(s) 57, 243
MaeIII GTNAC 1 cut(s) 140
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MluCI AATT 2 cut(s) 226, 265
MroNI GCCGGC 1 cut(s) 130
MseI TTAA 2 cut(s) 249, 268
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 80
MvaI CCWGG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 173
NaeI GCCGGC 1 cut(s) 132
NcoI CCATGG 1 cut(s) 202
NdeII GATC 1 cut(s) 190
NgoMIV GCCGGC 1 cut(s) 130
NlaIII CATG 2 cut(s) 88, 206
NlaIV GGNNCC 2 cut(s) 175, 208
NmuCI GTSAC 1 cut(s) 140
NspI RCATGY 1 cut(s) 88
PdiI GCCGGC 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 78
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 2 cut(s) 175, 208
PspPI GGNCC 1 cut(s) 206
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SaqAI TTAA 2 cut(s) 249, 268
Sau3AI GATC 1 cut(s) 190
Sau96I GGNCC 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 80
SetI ASST 3 cut(s) 18, 62, 102
SfaNI GCATC 2 cut(s) 30, 247
SinI GGWCC 1 cut(s) 206
Sse9I AATT 2 cut(s) 226, 265
SsiI CCGC 2 cut(s) 106, 254
SspMI CTAG 2 cut(s) 57, 243
StyD4I CCNGG 1 cut(s) 78
StyI CCWWGG 2 cut(s) 56, 202
TaaI ACNGT 1 cut(s) 140
TaqI TCGA 1 cut(s) 102
TasI AATT 2 cut(s) 226, 265
Tru1I TTAA 2 cut(s) 249, 268
Tru9I TTAA 2 cut(s) 249, 268
TseFI GTSAC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 219
VpaK11BI GGWCC 1 cut(s) 206
XceI RCATGY 1 cut(s) 88
XmaJI CCTAGG 1 cut(s) 56
XspI CTAG 2 cut(s) 57, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.