Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013548

Physical Location & Seq

Genomic Coordinates Reverse (-)

2407401 .. 2409259

Gene Structure 1859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G07620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGAGAAAATCTCTACTTCTAACATTGTTACTAGGAGTATCTTTATCAGCATTCTTGATAGTAATCTTCTTTATCATCTTCCTTAGAAGAAAAGAATCATCATCTACTGAATCAGATCAATACGACGTCGAATCACTAGACCACAACAAACAAGGCTTCTCCTCGGAAACAGAGGAACTCGTAATCTTTCAAGGCGGAGAAGATCTCACGATCTGCGATATCCTCGATGCTCCCGGAGAAGTCATCGGAAAATCAAGCTATGGTACTCTATACAAAGCGTCTTTACAAAGAAGCGGCAAGATTAGGGTTCTTAGGTTTCTTAGACCGGTGTGTACAGTGAGATCGGATTCTAAAGAGTTTAATGGCATCATCGAAACACTTGGGTTTGTTCGACATGAGAATTTGGTTCCTCTGTTAGGTTTCTACGCTGGAAACAGAGGAGAGAAGCTTATGGTTCATCCTTTCTTCGGTTCCGGGAATCTTTCCGACTTCATCAGAAGTGGAGATGATGAATCAAGAAAATGGATCAATATTTTAAGAATCACAATTGGAATATCGAAAGCCCTTGATCATCTTCATACAGGAATGCAAAAACCAATCGTCCATGGCAATCTGAAGTCCAAGAACGTTCTTCTCAGTTCGAGTTTCGAACCTAGAATCTCTGATTTCGGTTTACATTTGCTCTTGAACCTGTCTGCAGGACAAGAGATTCTTGATGTTTCTGCAGCTGAGGGATACAAAGCTCCTGAGTTAATAAAGATGAAGGACGTGAGCAAAGAGAGTGATGTGTATAGTCTTGGTGTGATCATGCTTGAGCTAGTCTCTGGTAAAGAACCGATAAACGAGAATGCAACTGGCGATGATGAGTTCTATCTTCCTGATTTTATGAGGAATGCTGTTCTTGATCATAGGTTGTCTGATTTATACCGTCCTGAGATTCTCGGAAGTGATGATAATCTAAGTGAAGAATGTGTCCTCAAGTATTTTCAGCTTGCAATGTCTTGTTGCTCTCCTTCGCCTTCTCTTAGGCCAAACGTCAAACAAGTCTTGAGGAAACTTGAAGAGATTGGGAAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

359

Amino Acids

40.16

Weight (kDa)

5.6

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	80 - 351	8.9e-30	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	80 - 353	2e-29	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07620
fragaria_vesca	FvH4_7g27020
malus_domestica	MD01G1177800.v1.1 MD07G1249600.v1.1
prunus_persica	Prupe.2G273300_v2.0.a1
pyrus_communis	pycom01g18860 pycom07g22290 pycom07g22300
rosa_chinensis	RchiOBHm_Chr1g0373821
rosa_laevigata	RLG00000026803
rosa_multiflora	Rmu_sc0013735.1_g000009
rosa_roxburghii	Rroxscaffold_4G00283980
rosa_rugosa	Rorug01G0379500
rosa_samantha	Rh1AG389000 Rh1BG353200 Rh1CG366400 Rh1DG384100
rosa_wichuraiana	Rw1G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	129
AciI	CCGC	2 cut(s)	195, 294
AclI	AACGTT	1 cut(s)	627
AclWI	GGATC	1 cut(s)	533
AcsI	RAATTY	2 cut(s)	400, 1073
AcuI	CTGAAG	1 cut(s)	635
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	2 cut(s)	265, 334
AfiI	CCNNNNNNNGG	2 cut(s)	416, 467
AgeI	ACCGGT	1 cut(s)	325
AgsI	TTSAA	3 cut(s)	191, 688, 1061
AjiI	CACGTC	1 cut(s)	769
AluBI	AGCT	6 cut(s)	258, 448, 728, 743, 817, 991
AluI	AGCT	6 cut(s)	258, 448, 728, 743, 817, 991
Alw26I	GTCTC	1 cut(s)	826
AlwI	GGATC	1 cut(s)	533
AoxI	GGCC	1 cut(s)	1028
ApeKI	GCWGC	1 cut(s)	725
ApoI	RAATTY	2 cut(s)	400, 1073
AsiGI	ACCGGT	1 cut(s)	325
AsuC2I	CCSGG	2 cut(s)	234, 475
AsuII	TTCGAA	1 cut(s)	648
BbvCI	CCTCAGC	1 cut(s)	729
BbvI	GCAGC	1 cut(s)	737
BciVI	GTATCC	1 cut(s)	728
BclI	TGATCA	3 cut(s)	568, 804, 904
BcnI	CCSGG	2 cut(s)	234, 475
BcoDI	GTCTC	1 cut(s)	826
BfaI	CTAG	4 cut(s)	32, 137, 654, 818
BfmI	CTRYAG	2 cut(s)	696, 723
BfuI	GTATCC	1 cut(s)	728
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	2 cut(s)	295, 726
BlsI	GCNGC	2 cut(s)	296, 727
Bme1390I	CCNGG	2 cut(s)	234, 475
BmgBI	CACGTC	1 cut(s)	769
BmiI	GGNNCC	2 cut(s)	408, 472
BmrFI	CCNGG	2 cut(s)	234, 475
BmsI	GCATC	2 cut(s)	217, 375
BplI	GAGNNNNNCTC	5 cut(s)	27, 189, 221, 806, 838
Bpu10I	CCTNAGC	1 cut(s)	729
Bpu14I	TTCGAA	1 cut(s)	648
BpuEI	CTTGAG	3 cut(s)	833, 962, 1069
BpuMI	CCSGG	2 cut(s)	234, 475
BsaBI	GATNNNNATC	2 cut(s)	62, 954
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	162, 604
BsaWI	WCCGGW	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	2 cut(s)	416, 467
Bse118I	RCCGGY	1 cut(s)	325
Bse1I	ACTGG	1 cut(s)	859
Bse3DI	GCAATG	1 cut(s)	1002
Bse8I	GATNNNNATC	2 cut(s)	62, 954
BseDI	CCNNGG	2 cut(s)	162, 604
BseGI	GGATG	1 cut(s)	457
BseJI	GATNNNNATC	2 cut(s)	62, 954
BseLI	CCNNNNNNNGG	2 cut(s)	416, 467
BseMI	GCAATG	1 cut(s)	1002
BseMII	CTCAG	4 cut(s)	649, 720, 738, 924
BseNI	ACTGG	1 cut(s)	859
BseRI	GAGGAG	2 cut(s)	151, 453
BseXI	GCAGC	1 cut(s)	737
BshFI	GGCC	1 cut(s)	1030
BshTI	ACCGGT	1 cut(s)	325
BsiSI	CCGG	3 cut(s)	234, 326, 474
BslI	CCNNNNNNNGG	2 cut(s)	416, 467
BsmAI	GTCTC	1 cut(s)	826
BsmI	GAATGC	4 cut(s)	50, 591, 853, 898
BsnI	GGCC	1 cut(s)	1030
Bsp119I	TTCGAA	1 cut(s)	648
Bsp1407I	TGTACA	1 cut(s)	332
Bsp143I	GATC	8 cut(s)	115, 202, 210, 341, 525, 568, 804, 904
Bsp19I	CCATGG	1 cut(s)	604
BspACI	CCGC	2 cut(s)	195, 294
BspANI	GGCC	1 cut(s)	1030
BspCNI	CTCAG	4 cut(s)	648, 721, 739, 925
BspLI	GGNNCC	2 cut(s)	408, 472
BspMAI	CTGCAG	2 cut(s)	700, 727
BspPI	GGATC	1 cut(s)	533
BspT104I	TTCGAA	1 cut(s)	648
BsrDI	GCAATG	1 cut(s)	1002
BsrFI	RCCGGY	1 cut(s)	325
BsrGI	TGTACA	1 cut(s)	332
BsrI	ACTGG	1 cut(s)	859
BssAI	RCCGGY	1 cut(s)	325
BssECI	CCNNGG	2 cut(s)	162, 604
BssMI	GATC	8 cut(s)	115, 202, 210, 341, 525, 568, 804, 904
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	604
Bst4CI	ACNGT	2 cut(s)	337, 929
Bst6I	CTCTTC	1 cut(s)	1056
BstACI	GRCGYC	1 cut(s)	126
BstAUI	TGTACA	1 cut(s)	332
BstBI	TTCGAA	1 cut(s)	648
BstC8I	GCNNGC	1 cut(s)	993
BstDEI	CTNAG	9 cut(s)	83, 311, 320, 635, 729, 747, 933, 959, 1025
BstDSI	CCRYGG	1 cut(s)	604
BstENI	CCTNNNNNAGG	1 cut(s)	414
BstF5I	GGATG	1 cut(s)	457
BstKTI	GATC	8 cut(s)	118, 205, 213, 344, 528, 571, 807, 907
BstMAI	GTCTC	1 cut(s)	826
BstMBI	GATC	8 cut(s)	115, 202, 210, 341, 525, 568, 804, 904
BstSCI	CCNGG	2 cut(s)	232, 473
BstSFI	CTRYAG	2 cut(s)	696, 723
BstV1I	GCAGC	1 cut(s)	737
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
BsuI	GTATCC	1 cut(s)	728
BsuRI	GGCC	1 cut(s)	1030
BtgI	CCRYGG	1 cut(s)	604
BtgZI	GCGATG	1 cut(s)	873
BtrI	CACGTC	1 cut(s)	769
BtsCI	GGATG	1 cut(s)	457
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	993
Cfr10I	RCCGGY	1 cut(s)	325
CseI	GACGC	1 cut(s)	267
Csp6I	GTAC	2 cut(s)	264, 333
CspAI	ACCGGT	1 cut(s)	325
CviAII	CATG	3 cut(s)	395, 605, 808
CviJI	RGCY	9 cut(s)	156, 258, 448, 563, 728, 743, 817, 991, 1030
CviKI_1	RGCY	9 cut(s)	156, 258, 448, 563, 728, 743, 817, 991, 1030
CviQI	GTAC	2 cut(s)	264, 333
DdeI	CTNAG	9 cut(s)	83, 311, 320, 635, 729, 747, 933, 959, 1025
DpnI	GATC	8 cut(s)	117, 204, 212, 343, 527, 570, 806, 906
DpnII	GATC	8 cut(s)	115, 202, 210, 341, 525, 568, 804, 904
Eam1104I	CTCTTC	1 cut(s)	1056
EarI	CTCTTC	1 cut(s)	1056
EciI	GGCGGA	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	604
Eco32I	GATATC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	635
EcoNI	CCTNNNNNAGG	1 cut(s)	414
EcoRV	GATATC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	604
ErhI	CCWWGG	1 cut(s)	604
FaeI	CATG	3 cut(s)	398, 608, 811
FalI	AAGNNNNNCTT	2 cut(s)	696, 728
FatI	CATG	3 cut(s)	394, 604, 807
FbaI	TGATCA	3 cut(s)	568, 804, 904
Fnu4HI	GCNGC	2 cut(s)	295, 726
FokI	GGATG	1 cut(s)	444
Fsp4HI	GCNGC	2 cut(s)	295, 726
FspBI	CTAG	4 cut(s)	32, 137, 654, 818
GluI	GCNGC	2 cut(s)	295, 726
HaeIII	GGCC	1 cut(s)	1030
HapII	CCGG	3 cut(s)	234, 326, 474
HgaI	GACGC	1 cut(s)	267
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	3 cut(s)	398, 608, 811
HindIII	AAGCTT	1 cut(s)	446
HpaII	CCGG	3 cut(s)	234, 326, 474
Hpy166II	GTNNAC	2 cut(s)	333, 674
Hpy8I	GTNNAC	2 cut(s)	333, 674
Hpy99I	CGWCG	2 cut(s)	128, 131
HpyAV	CCTTC	3 cut(s)	757, 1023, 1029
HpyCH4III	ACNGT	2 cut(s)	337, 929
HpyCH4IV	ACGT	4 cut(s)	126, 627, 768, 1035
HpyCH4V	TGCA	5 cut(s)	589, 698, 725, 851, 995
HpyF3I	CTNAG	9 cut(s)	83, 311, 320, 635, 729, 747, 933, 959, 1025
HpySE526I	ACGT	4 cut(s)	126, 627, 768, 1035
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	3 cut(s)	398, 608, 811
Ksp22I	TGATCA	3 cut(s)	568, 804, 904
Kzo9I	GATC	8 cut(s)	115, 202, 210, 341, 525, 568, 804, 904
LmnI	GCTCC	2 cut(s)	235, 748
Lsp1109I	GCAGC	1 cut(s)	737
LweI	GCATC	2 cut(s)	217, 375
MaeI	CTAG	4 cut(s)	32, 137, 654, 818
MaeII	ACGT	4 cut(s)	126, 627, 768, 1035
MaeIII	GTNAC	1 cut(s)	27
MalI	GATC	8 cut(s)	117, 204, 212, 343, 527, 570, 806, 906
MboI	GATC	8 cut(s)	115, 202, 210, 341, 525, 568, 804, 904
MfeI	CAATTG	1 cut(s)	546
MflI	RGATCY	1 cut(s)	202
MluCI	AATT	3 cut(s)	400, 546, 1073
MmeI	TCCRAC	1 cut(s)	510
MnlI	CCTC	9 cut(s)	166, 172, 233, 420, 431, 724, 882, 986, 1044
MseI	TTAA	3 cut(s)	360, 536, 752
MspA1I	CMGCKG	1 cut(s)	728
MspI	CCGG	3 cut(s)	234, 326, 474
MspR9I	CCNGG	2 cut(s)	234, 475
MunI	CAATTG	1 cut(s)	546
Mva1269I	GAATGC	4 cut(s)	50, 591, 853, 898
NciI	CCSGG	2 cut(s)	234, 475
NcoI	CCATGG	1 cut(s)	604
NdeII	GATC	8 cut(s)	115, 202, 210, 341, 525, 568, 804, 904
NlaIII	CATG	3 cut(s)	398, 608, 811
NlaIV	GGNNCC	2 cut(s)	408, 472
NspV	TTCGAA	1 cut(s)	648
PctI	GAATGC	4 cut(s)	50, 591, 853, 898
PfoI	TCCNGGA	2 cut(s)	232, 473
PinAI	ACCGGT	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	296, 727
Psp1406I	AACGTT	1 cut(s)	627
PspN4I	GGNNCC	2 cut(s)	408, 472
PstI	CTGCAG	2 cut(s)	700, 727
PsuI	RGATCY	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	728
RsaI	GTAC	2 cut(s)	265, 334
RsaNI	GTAC	2 cut(s)	264, 333
SaqAI	TTAA	3 cut(s)	360, 536, 752
SatI	GCNGC	2 cut(s)	295, 726
Sau3AI	GATC	8 cut(s)	115, 202, 210, 341, 525, 568, 804, 904
ScrFI	CCNGG	2 cut(s)	234, 475
SfaNI	GCATC	2 cut(s)	217, 375
SfcI	CTRYAG	2 cut(s)	696, 723
SfuI	TTCGAA	1 cut(s)	648
SmlI	CTYRAG	3 cut(s)	812, 977, 1048
SmoI	CTYRAG	3 cut(s)	812, 977, 1048
Sse9I	AATT	3 cut(s)	400, 546, 1073
SsiI	CCGC	2 cut(s)	195, 294
SspI	AATATT	1 cut(s)	532
SspMI	CTAG	4 cut(s)	32, 137, 654, 818
StyD4I	CCNGG	2 cut(s)	232, 473
StyI	CCWWGG	1 cut(s)	604
TaaI	ACNGT	2 cut(s)	337, 929
TaiI	ACGT	4 cut(s)	129, 630, 771, 1038
TaqI	TCGA	7 cut(s)	129, 225, 372, 391, 557, 641, 648
TasI	AATT	3 cut(s)	400, 546, 1073
TatI	WGTACW	1 cut(s)	332
TauI	GCSGC	1 cut(s)	297
Tru1I	TTAA	3 cut(s)	360, 536, 752
Tru9I	TTAA	3 cut(s)	360, 536, 752
TscAI	CASTG	1 cut(s)	342
TseI	GCWGC	1 cut(s)	725
TspDTI	ATGAA	5 cut(s)	446, 481, 525, 566, 776
TspRI	CASTG	1 cut(s)	342
XagI	CCTNNNNNAGG	1 cut(s)	414
XapI	RAATTY	2 cut(s)	400, 1073
XspI	CTAG	4 cut(s)	32, 137, 654, 818
ZraI	GACGTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.