Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0013548

Physical Location & Seq

Genomic Coordinates Forward (+)

27828852 .. 27830950

Gene Structure 2099 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1177800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGAACAGAACCCAGGTGCTAAATTTGATTCTTGCACTGACTTCATCAGCAACTTTGGTGTTTTTCCTACTTTTCATCTTTTACTGCAAGAAAGCTGCAAAGAGTGAGCAAAAGGATGTGGAAAAAACAGAGCAGAAGCAAGAGGAAGTTGTGGAGGCAGATGAGCTGGTGACTTTTCAGGATGGGGAGGACTTAACAATCTGTGACATTCTGGATGCCCCAGGGGAAGTGATTGGAAAATCGAACTACGGTACGCTGTATAAGGCGCTGTTGCAGAGCAGCAACTCGGTGAAGTTGCTGAGGTTTTTGAGGCCTGTTTGCACTGCAAAAGTTCAAGATTTTGGTGAAGTTGTTCGGCTTTTGGGGTGCATAAGGCATCATAATTTGGTGCCTCTTTTGGGATTTTATGCAGGGCCGAGAGGTGAGAAGCTTTTGATTCATCCGTTTTATTGGCGCGGTAATCTGGCTCAGTTTGTGAGAGAAAGCAACCCTGACTCTCACAAATGGCTCATAATCTATAAGATCTCAGTTGGTATAGCCGAAGGCTTGGATCAACTTCACACCGGCTTTGAAAAGCCGATAATTCACGGAAATCTCAAGTCGAAAAACGTACTCTTGGGTCACCATTATCGCCCTTTCATATCCGACTTCAGCCTCCATCTTCTGCTGAATCCAACTGCTGGCCATGAAATGCTTGAAGTCTCGGCATCCGAAGGCTACAAAGCACCTGAGCTGATAAAAATGAGGGATGCGAACGAAAGGACCGATATATACAGTCTTGGGGTTATCTTGCTTGAATTTCTCACGGGGAAGGAACCCATCAACCAAAACCCTACAACTCCTGATGAGGATTTTAGTTTGCCAGATTTCATGAGAAATGCAGTGCTTGAACATAGAATTCATGACTTGTTCCATCCAGATTTGCTTCTCAATAGCAGCGTTGGCGACGGAGAAATCCCCGTCACAAAAGAAAGGATTCTCAAATTCTTTCAGCTTGCTATGGCATGTTGTGCTCCTTCTCCATCATTTAGACCAAACTCCAAGCAAGTTCTGTCGAAGCTTGAAGAAATTGGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

360

Amino Acids

40.48

Weight (kDa)

6.02

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	76 - 351	7.1e-24	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	76 - 352	1.1e-22	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07620
fragaria_vesca	FvH4_7g27020
malus_domestica	MD01G1177800.v1.1 MD07G1249600.v1.1
prunus_persica	Prupe.2G273300_v2.0.a1
pyrus_communis	pycom01g18860 pycom07g22290 pycom07g22300
rosa_chinensis	RchiOBHm_Chr1g0373821
rosa_laevigata	RLG00000026803
rosa_multiflora	Rmu_sc0013735.1_g000009
rosa_roxburghii	Rroxscaffold_4G00283980
rosa_rugosa	Rorug01G0379500
rosa_samantha	Rh1AG389000 Rh1BG353200 Rh1CG366400 Rh1DG384100
rosa_wichuraiana	Rw1G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	388
AccB7I	CCANNNNNTGG	1 cut(s)	680
AccII	CGCG	1 cut(s)	456
AciI	CCGC	1 cut(s)	456
AclWI	GGATC	1 cut(s)	558
AcoI	YGGCCR	1 cut(s)	682
AcsI	RAATTY	4 cut(s)	22, 797, 897, 983
AcuI	CTGAAG	1 cut(s)	634
AfaI	GTAC	2 cut(s)	253, 612
AfiI	CCNNNNNNNGG	2 cut(s)	398, 680
AgsI	TTSAA	6 cut(s)	335, 572, 698, 797, 890, 1064
AjnI	CCWGG	2 cut(s)	12, 220
AluBI	AGCT	6 cut(s)	95, 166, 430, 733, 994, 1060
AluI	AGCT	6 cut(s)	95, 166, 430, 733, 994, 1060
Alw21I	GWGCWC	1 cut(s)	1015
Alw26I	GTCTC	1 cut(s)	706
AlwI	GGATC	1 cut(s)	558
AoxI	GGCC	3 cut(s)	311, 413, 682
ApeKI	GCWGC	3 cut(s)	95, 279, 936
ApoI	RAATTY	4 cut(s)	22, 797, 897, 983
Asp700I	GAANNNNTTC	2 cut(s)	351, 975
AspLEI	GCGC	2 cut(s)	268, 456
AspS9I	GGNCC	2 cut(s)	413, 762
AsuHPI	GGTGA	5 cut(s)	181, 301, 356, 434, 614
AvaII	GGWCC	1 cut(s)	762
BalI	TGGCCA	1 cut(s)	684
BanI	GGYRCC	1 cut(s)	388
Bbv12I	GWGCWC	1 cut(s)	1015
BbvCI	CCTCAGC	1 cut(s)	299
BbvI	GCAGC	3 cut(s)	82, 291, 948
BccI	CCATC	5 cut(s)	176, 666, 827, 921, 1030
BciT130I	CCWGG	2 cut(s)	14, 222
BcoDI	GTCTC	1 cut(s)	706
BfoI	RGCGCY	1 cut(s)	269
BglII	AGATCT	1 cut(s)	522
BisI	GCNGC	3 cut(s)	96, 280, 937
BlsI	GCNGC	3 cut(s)	97, 281, 938
Bme1390I	CCNGG	2 cut(s)	14, 222
Bme18I	GGWCC	1 cut(s)	762
BmgT120I	GGNCC	2 cut(s)	413, 762
BmiI	GGNNCC	2 cut(s)	390, 816
BmrFI	CCNGG	2 cut(s)	14, 222
BmsI	GCATC	4 cut(s)	205, 385, 716, 739
Bpu10I	CCTNAGC	2 cut(s)	299, 729
BpuEI	CTTGAG	1 cut(s)	581
BsaJI	CCNNGG	3 cut(s)	12, 220, 221
Bsc4I	CCNNNNNNNGG	2 cut(s)	398, 680
Bse118I	RCCGGY	1 cut(s)	563
BseBI	CCWGG	2 cut(s)	14, 222
BseDI	CCNNGG	3 cut(s)	12, 220, 221
BseGI	GGATG	7 cut(s)	121, 187, 220, 439, 707, 754, 913
BseLI	CCNNNNNNNGG	2 cut(s)	398, 680
BseMII	CTCAG	4 cut(s)	290, 482, 540, 720
BseXI	GCAGC	3 cut(s)	82, 291, 948
Bsh1236I	CGCG	1 cut(s)	456
BshFI	GGCC	3 cut(s)	313, 415, 684
BshNI	GGYRCC	1 cut(s)	388
BsiHKAI	GWGCWC	1 cut(s)	1015
BsiSI	CCGG	1 cut(s)	564
BslI	CCNNNNNNNGG	2 cut(s)	398, 680
BsmAI	GTCTC	1 cut(s)	706
BsnI	GGCC	3 cut(s)	313, 415, 684
Bsp1286I	GDGCHC	1 cut(s)	1015
Bsp143I	GATC	2 cut(s)	522, 550
BspACI	CCGC	1 cut(s)	456
BspANI	GGCC	3 cut(s)	313, 415, 684
BspCNI	CTCAG	4 cut(s)	291, 481, 539, 721
BspFNI	CGCG	1 cut(s)	456
BspHI	TCATGA	2 cut(s)	870, 901
BspLI	GGNNCC	2 cut(s)	390, 816
BspPI	GGATC	1 cut(s)	558
BspT107I	GGYRCC	1 cut(s)	388
BsrFI	RCCGGY	1 cut(s)	563
BssAI	RCCGGY	1 cut(s)	563
BssECI	CCNNGG	3 cut(s)	12, 220, 221
BssMI	GATC	2 cut(s)	522, 550
Bst2UI	CCWGG	2 cut(s)	14, 222
Bst4CI	ACNGT	2 cut(s)	251, 776
BstAPI	GCANNNNNTGC	1 cut(s)	1010
BstC8I	GCNNGC	2 cut(s)	682, 996
BstDEI	CTNAG	4 cut(s)	299, 468, 526, 729
BstEII	GGTNACC	1 cut(s)	620
BstF5I	GGATG	7 cut(s)	121, 187, 220, 439, 707, 754, 913
BstFNI	CGCG	1 cut(s)	456
BstH2I	RGCGCY	1 cut(s)	269
BstHHI	GCGC	2 cut(s)	268, 456
BstKTI	GATC	2 cut(s)	525, 553
BstMAI	GTCTC	1 cut(s)	706
BstMBI	GATC	2 cut(s)	522, 550
BstMWI	GCNNNNNNNGC	2 cut(s)	942, 1010
BstNI	CCWGG	2 cut(s)	14, 222
BstNSI	RCATGY	1 cut(s)	1008
BstPI	GGTNACC	1 cut(s)	620
BstSCI	CCNGG	2 cut(s)	12, 220
BstUI	CGCG	1 cut(s)	456
BstV1I	GCAGC	3 cut(s)	82, 291, 948
BstX2I	RGATCY	1 cut(s)	522
BstYI	RGATCY	1 cut(s)	522
BsuRI	GGCC	3 cut(s)	313, 415, 684
BtsCI	GGATG	7 cut(s)	121, 187, 220, 439, 707, 754, 913
BtsI	GCAGTG	2 cut(s)	321, 888
BtsIMutI	CAGTG	3 cut(s)	35, 321, 888
Cac8I	GCNNGC	2 cut(s)	682, 996
CciI	TCATGA	2 cut(s)	870, 901
CfoI	GCGC	2 cut(s)	268, 456
Cfr10I	RCCGGY	1 cut(s)	563
Cfr13I	GGNCC	2 cut(s)	413, 762
Csp6I	GTAC	2 cut(s)	252, 611
CviAII	CATG	4 cut(s)	686, 871, 902, 1005
CviQI	GTAC	2 cut(s)	252, 611
DdeI	CTNAG	4 cut(s)	299, 468, 526, 729
DpnI	GATC	2 cut(s)	524, 552
DpnII	GATC	2 cut(s)	522, 550
EaeI	YGGCCR	1 cut(s)	682
Eco147I	AGGCCT	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	762
Eco57I	CTGAAG	1 cut(s)	634
Eco91I	GGTNACC	1 cut(s)	620
EcoO65I	GGTNACC	1 cut(s)	620
EcoRI	GAATTC	1 cut(s)	897
EcoRII	CCWGG	2 cut(s)	12, 220
FaeI	CATG	4 cut(s)	689, 874, 905, 1008
FatI	CATG	4 cut(s)	685, 870, 901, 1004
Fnu4HI	GCNGC	3 cut(s)	96, 280, 937
FokI	GGATG	7 cut(s)	128, 194, 227, 426, 694, 761, 900
Fsp4HI	GCNGC	3 cut(s)	96, 280, 937
GlaI	GCGC	2 cut(s)	267, 455
GluI	GCNGC	3 cut(s)	96, 280, 937
HaeII	RGCGCY	1 cut(s)	269
HaeIII	GGCC	3 cut(s)	313, 415, 684
HapII	CCGG	1 cut(s)	564
HhaI	GCGC	2 cut(s)	268, 456
Hin1II	CATG	4 cut(s)	689, 874, 905, 1008
Hin6I	GCGC	2 cut(s)	266, 454
HinP1I	GCGC	2 cut(s)	266, 454
HindIII	AAGCTT	2 cut(s)	428, 1058
HinfI	GANTC	5 cut(s)	28, 436, 494, 670, 976
HpaII	CCGG	1 cut(s)	564
HphI	GGTGA	5 cut(s)	181, 301, 356, 434, 614
Hpy188I	TCNGA	2 cut(s)	646, 712
Hpy188III	TCNNGA	7 cut(s)	179, 212, 335, 842, 871, 902, 917
Hpy99I	CGWCG	1 cut(s)	950
HpyAV	CCTTC	4 cut(s)	536, 707, 805, 1026
HpyCH4III	ACNGT	2 cut(s)	251, 776
HpyCH4IV	ACGT	1 cut(s)	609
HpyCH4V	TGCA	9 cut(s)	35, 87, 98, 274, 321, 326, 369, 410, 881
HpyF10VI	GCNNNNNNNGC	2 cut(s)	942, 1010
HpyF3I	CTNAG	4 cut(s)	299, 468, 526, 729
HpySE526I	ACGT	1 cut(s)	609
Hsp92II	CATG	4 cut(s)	689, 874, 905, 1008
HspAI	GCGC	2 cut(s)	266, 454
Kzo9I	GATC	2 cut(s)	522, 550
LmnI	GCTCC	1 cut(s)	1018
Lsp1109I	GCAGC	3 cut(s)	82, 291, 948
LweI	GCATC	4 cut(s)	205, 385, 716, 739
MaeII	ACGT	1 cut(s)	609
MaeIII	GTNAC	4 cut(s)	169, 203, 620, 961
MalI	GATC	2 cut(s)	524, 552
MboI	GATC	2 cut(s)	522, 550
MboII	GAAGA	2 cut(s)	653, 1076
MflI	RGATCY	1 cut(s)	522
MhlI	GDGCHC	1 cut(s)	1015
MlsI	TGGCCA	1 cut(s)	684
MluCI	AATT	7 cut(s)	22, 382, 582, 797, 897, 983, 1068
MluNI	TGGCCA	1 cut(s)	684
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	2 cut(s)	669, 698
Mox20I	TGGCCA	1 cut(s)	684
MroXI	GAANNNNTTC	2 cut(s)	351, 975
MscI	TGGCCA	1 cut(s)	684
MseI	TTAA	1 cut(s)	194
Msp20I	TGGCCA	1 cut(s)	684
MspI	CCGG	1 cut(s)	564
MspR9I	CCNGG	2 cut(s)	14, 222
MvaI	CCWGG	2 cut(s)	14, 222
MvnI	CGCG	1 cut(s)	456
MwoI	GCNNNNNNNGC	2 cut(s)	942, 1010
NdeII	GATC	2 cut(s)	522, 550
NlaIII	CATG	4 cut(s)	689, 874, 905, 1008
NlaIV	GGNNCC	2 cut(s)	390, 816
NmeAIII	GCCGAG	2 cut(s)	441, 683
NmuCI	GTSAC	4 cut(s)	169, 203, 620, 961
NspI	RCATGY	1 cut(s)	1008
PagI	TCATGA	2 cut(s)	870, 901
PasI	CCCWGGG	1 cut(s)	221
PceI	AGGCCT	1 cut(s)	313
PcsI	WCGNNNNNNNCGW	1 cut(s)	762
PdmI	GAANNNNTTC	2 cut(s)	351, 975
PfeI	GAWTC	4 cut(s)	28, 436, 670, 976
PflMI	CCANNNNNTGG	1 cut(s)	680
PkrI	GCNGC	3 cut(s)	97, 281, 938
PleI	GAGTC	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	488
Psp6I	CCWGG	2 cut(s)	12, 220
PspEI	GGTNACC	1 cut(s)	620
PspGI	CCWGG	2 cut(s)	12, 220
PspN4I	GGNNCC	2 cut(s)	390, 816
PspPI	GGNCC	2 cut(s)	413, 762
PsuI	RGATCY	1 cut(s)	522
RsaI	GTAC	2 cut(s)	253, 612
RsaNI	GTAC	2 cut(s)	252, 611
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	3 cut(s)	96, 280, 937
Sau3AI	GATC	2 cut(s)	522, 550
Sau96I	GGNCC	2 cut(s)	413, 762
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	2 cut(s)	14, 222
SduI	GDGCHC	1 cut(s)	1015
SfaNI	GCATC	4 cut(s)	205, 385, 716, 739
SinI	GGWCC	1 cut(s)	762
SmlI	CTYRAG	1 cut(s)	596
SmoI	CTYRAG	1 cut(s)	596
Sse9I	AATT	7 cut(s)	22, 382, 582, 797, 897, 983, 1068
SseBI	AGGCCT	1 cut(s)	313
SsiI	CCGC	1 cut(s)	456
StuI	AGGCCT	1 cut(s)	313
StyD4I	CCNGG	2 cut(s)	12, 220
TaaI	ACNGT	2 cut(s)	251, 776
TaiI	ACGT	1 cut(s)	612
TaqI	TCGA	3 cut(s)	242, 602, 1055
TaqII	GACCGA	1 cut(s)	779
TasI	AATT	7 cut(s)	22, 382, 582, 797, 897, 983, 1068
TfiI	GAWTC	4 cut(s)	28, 436, 670, 976
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TscAI	CASTG	3 cut(s)	42, 328, 888
TseFI	GTSAC	4 cut(s)	169, 203, 620, 961
TseI	GCWGC	3 cut(s)	95, 279, 936
Tsp45I	GTSAC	4 cut(s)	169, 203, 620, 961
TspDTI	ATGAA	8 cut(s)	17, 33, 64, 428, 628, 702, 859, 890
TspGWI	ACGGA	3 cut(s)	432, 603, 963
TspRI	CASTG	3 cut(s)	42, 328, 888
Van91I	CCANNNNNTGG	1 cut(s)	680
VpaK11BI	GGWCC	1 cut(s)	762
XapI	RAATTY	4 cut(s)	22, 797, 897, 983
XceI	RCATGY	1 cut(s)	1008
XmnI	GAANNNNTTC	2 cut(s)	351, 975

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.