Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0013548

Physical Location & Seq

Genomic Coordinates Forward (+)

48521838 .. 48525246

Gene Structure 3409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG353200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGAAGAACATCCACAAGCTCACTTTGATTCTGGTACTGACCTCAGCCACAGTTTTGGTATTTCTTGCATTTTTTATCTACTTTTGCTGCAAAAGAAGTCCAAAAACTGAGCTAAAAGATGTAGAAAGCACAGAGCTGAACCATGAAGATGATGGTGTTGTTCTTCAACTGGAGGATTTGATAACTTTTCAGAATGGTGAGGACCTCACCATTTCTGACATACTGGAAGCTCCAGGAGAAGTGATTGGAAAATCCAACTATGGCACACTTTACAAGGCTTTGTTGCAGACAAGTGACTCAGTGAAGTTGCTGAGGTTTTTGAGGCCTGTGTGTACTGCAAGAGTTGAAGAATTTGGTGAAGTGATTCAGCTTTTGGGCTGCATCAGGCACCCCAATTTGGTGCCTCTTCTGGGTTTCTATGCAGGGCCAAGAGGTGAGAAGCTTCTGATTCATCCGTATTATTGGCGTGGGAGTCTGGCTCCATTTGTGAGAGAGGGCAACCCTGAGTCTCACAAATGGGCGATAATTTATAGGATCTCAGTTGGTATAGCCAAAGGATTACATCATCTTCACACTGGCTTGGAGAAGCCAGTAATTCATGGTAATCTCAAGTTGAAAAATATGCTCTTCGACCGGCATTACCAACCTTTCATCTCAGATTTCAGCCTACACCTTCTCTTGAATCCCACTGCCGGCCAAGAAATGCTTGAATCTTCGGCATTCCAAGGCTACAAGGCGCCTGAGCTGATCAAAATGAGGGATGCAAATGAAGAGACTGATATATACAGTTTCGGGATCATCTTACTTGAGTTACTCACAGGGAAGGAACCCATCAACCAAAACCCTACAACACCTGATGAGGACTTCAGTTTGCCGAACCTAATGAGAAATGCAGTCCTTGGACATAGAATTCATGAAGTGTTCCATCCAGATATACTTGTCAGTAGCTGCACTACTGATGATGAAATCCCAGTTACTAAGGAAAGAATACTCAAATTGTTTCAGCTTGCTATGACATGTTGTTCTCCTTCACCATCACTGAGACCAAACGCCAAGCAAGTGCTATGGAAGCTTGAAGAGATTGAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

363

Amino Acids

41.08

Weight (kDa)

5.88

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	80 - 357	2.1e-26	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	80 - 355	2.4e-25	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07620
fragaria_vesca	FvH4_7g27020
malus_domestica	MD01G1177800.v1.1 MD07G1249600.v1.1
prunus_persica	Prupe.2G273300_v2.0.a1
pyrus_communis	pycom01g18860 pycom07g22290 pycom07g22300
rosa_chinensis	RchiOBHm_Chr1g0373821
rosa_laevigata	RLG00000026803
rosa_multiflora	Rmu_sc0013735.1_g000009
rosa_roxburghii	Rroxscaffold_4G00283980
rosa_rugosa	Rorug01G0379500
rosa_samantha	Rh1AG389000 Rh1BG353200 Rh1CG366400 Rh1DG384100
rosa_wichuraiana	Rw1G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	387, 400, 736
AclWI	GGATC	2 cut(s)	542, 803
AcoI	YGGCCR	1 cut(s)	694
AcsI	RAATTY	2 cut(s)	350, 909
AcuI	CTGAAG	1 cut(s)	850
AcyI	GRCGYC	1 cut(s)	737
AfaI	GTAC	2 cut(s)	36, 334
AfiI	CCNNNNNNNGG	3 cut(s)	397, 410, 692
AflIII	ACRYGT	1 cut(s)	1016
AgsI	TTSAA	7 cut(s)	167, 347, 616, 682, 710, 1076, 1085
AjnI	CCWGG	1 cut(s)	232
Alw26I	GTCTC	3 cut(s)	513, 767, 1036
AlwI	GGATC	2 cut(s)	542, 803
AlwNI	CAGNNNCTG	1 cut(s)	948
AoxI	GGCC	3 cut(s)	323, 425, 694
ApeKI	GCWGC	3 cut(s)	87, 378, 948
ApoI	RAATTY	2 cut(s)	350, 909
Asp700I	GAANNNNTTC	1 cut(s)	363
AspLEI	GCGC	1 cut(s)	739
AspS9I	GGNCC	2 cut(s)	202, 425
AsuHPI	GGTGA	5 cut(s)	199, 209, 368, 446, 1023
AvaII	GGWCC	1 cut(s)	202
BanI	GGYRCC	3 cut(s)	387, 400, 736
BbvCI	CCTCAGC	2 cut(s)	43, 311
BbvI	GCAGC	3 cut(s)	74, 365, 935
BccI	CCATC	4 cut(s)	146, 839, 933, 1042
BciT130I	CCWGG	1 cut(s)	234
BclI	TGATCA	1 cut(s)	747
BcoDI	GTCTC	3 cut(s)	513, 767, 1036
BfaI	CTAG	1 cut(s)	1090
BfoI	RGCGCY	1 cut(s)	740
BisI	GCNGC	3 cut(s)	88, 379, 949
BlsI	GCNGC	3 cut(s)	89, 380, 950
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	202
BmgT120I	GGNCC	2 cut(s)	202, 425
BmiI	GGNNCC	5 cut(s)	389, 402, 480, 738, 828
BmrFI	CCNGG	1 cut(s)	234
BmrI	ACTGGG	1 cut(s)	965
BmsI	GCATC	2 cut(s)	390, 751
BmuI	ACTGGG	1 cut(s)	965
BplI	GAGNNNNNCTC	2 cut(s)	463, 495
BpmI	CTGGAG	2 cut(s)	191, 216
Bpu10I	CCTNAGC	3 cut(s)	43, 311, 741
BpuEI	CTTGAG	2 cut(s)	593, 827
BsaHI	GRCGYC	1 cut(s)	737
BsaI	GGTCTC	1 cut(s)	1036
BsaJI	CCNNGG	2 cut(s)	724, 898
Bsc4I	CCNNNNNNNGG	3 cut(s)	397, 410, 692
Bse118I	RCCGGY	2 cut(s)	633, 692
Bse1I	ACTGG	5 cut(s)	174, 228, 580, 590, 971
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	2 cut(s)	724, 898
BseGI	GGATG	4 cut(s)	9, 451, 766, 925
BseLI	CCNNNNNNNGG	3 cut(s)	397, 410, 692
BseMII	CTCAG	9 cut(s)	57, 99, 302, 312, 495, 552, 669, 732, 1031
BseNI	ACTGG	5 cut(s)	174, 228, 580, 590, 971
BseXI	GCAGC	3 cut(s)	74, 365, 935
BsgI	GTGCAG	1 cut(s)	934
Bsh1285I	CGRYCG	1 cut(s)	634
BshFI	GGCC	3 cut(s)	325, 427, 696
BshNI	GGYRCC	3 cut(s)	387, 400, 736
BsiEI	CGRYCG	1 cut(s)	634
BsiSI	CCGG	2 cut(s)	634, 693
BslI	CCNNNNNNNGG	3 cut(s)	397, 410, 692
BsmAI	GTCTC	3 cut(s)	513, 767, 1036
BsmI	GAATGC	1 cut(s)	719
BsnI	GGCC	3 cut(s)	325, 427, 696
Bso31I	GGTCTC	1 cut(s)	1036
Bsp143I	GATC	3 cut(s)	534, 747, 795
BspANI	GGCC	3 cut(s)	325, 427, 696
BspCNI	CTCAG	9 cut(s)	56, 100, 303, 311, 496, 551, 668, 733, 1032
BspHI	TCATGA	1 cut(s)	913
BspLI	GGNNCC	5 cut(s)	389, 402, 480, 738, 828
BspPI	GGATC	2 cut(s)	542, 803
BspQI	GCTCTTC	1 cut(s)	632
BspT107I	GGYRCC	3 cut(s)	387, 400, 736
BspTNI	GGTCTC	1 cut(s)	1036
BsrFI	RCCGGY	2 cut(s)	633, 692
BsrI	ACTGG	5 cut(s)	174, 228, 580, 590, 971
BssAI	RCCGGY	2 cut(s)	633, 692
BssECI	CCNNGG	2 cut(s)	724, 898
BssMI	GATC	3 cut(s)	534, 747, 795
BssNI	GRCGYC	1 cut(s)	737
BssT1I	CCWWGG	2 cut(s)	724, 898
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	2 cut(s)	52, 788
Bst6I	CTCTTC	4 cut(s)	411, 632, 765, 1071
BstACI	GRCGYC	1 cut(s)	737
BstC8I	GCNNGC	2 cut(s)	694, 1008
BstF5I	GGATG	4 cut(s)	9, 451, 766, 925
BstH2I	RGCGCY	1 cut(s)	740
BstHHI	GCGC	1 cut(s)	739
BstKTI	GATC	3 cut(s)	537, 750, 798
BstMAI	GTCTC	3 cut(s)	513, 767, 1036
BstMBI	GATC	3 cut(s)	534, 747, 795
BstMCI	CGRYCG	1 cut(s)	634
BstMWI	GCNNNNNNNGC	1 cut(s)	1069
BstNI	CCWGG	1 cut(s)	234
BstNSI	RCATGY	1 cut(s)	1020
BstSCI	CCNGG	1 cut(s)	232
BstV1I	GCAGC	3 cut(s)	74, 365, 935
BstX2I	RGATCY	1 cut(s)	534
BstXI	CCANNNNNNTGG	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	534
BsuRI	GGCC	3 cut(s)	325, 427, 696
BtsCI	GGATG	4 cut(s)	9, 451, 766, 925
BtsI	GCAGTG	1 cut(s)	687
BtsIMutI	CAGTG	4 cut(s)	306, 573, 687, 1037
Cac8I	GCNNGC	2 cut(s)	694, 1008
CaiI	CAGNNNCTG	1 cut(s)	948
CciI	TCATGA	1 cut(s)	913
CfoI	GCGC	1 cut(s)	739
Cfr10I	RCCGGY	2 cut(s)	633, 692
Cfr13I	GGNCC	2 cut(s)	202, 425
Csp6I	GTAC	2 cut(s)	35, 333
CviAII	CATG	4 cut(s)	143, 599, 914, 1017
CviQI	GTAC	2 cut(s)	35, 333
DinI	GGCGCC	1 cut(s)	738
DpnI	GATC	3 cut(s)	536, 749, 797
DpnII	GATC	3 cut(s)	534, 747, 795
EaeI	YGGCCR	1 cut(s)	694
Eam1104I	CTCTTC	4 cut(s)	411, 632, 765, 1071
EarI	CTCTTC	4 cut(s)	411, 632, 765, 1071
Eco130I	CCWWGG	2 cut(s)	724, 898
Eco147I	AGGCCT	1 cut(s)	325
Eco31I	GGTCTC	1 cut(s)	1036
Eco47I	GGWCC	1 cut(s)	202
Eco57I	CTGAAG	1 cut(s)	850
EcoO109I	RGGNCCY	1 cut(s)	202
EcoRI	GAATTC	1 cut(s)	909
EcoRII	CCWGG	1 cut(s)	232
EcoT14I	CCWWGG	2 cut(s)	724, 898
EgeI	GGCGCC	1 cut(s)	738
EheI	GGCGCC	1 cut(s)	738
ErhI	CCWWGG	2 cut(s)	724, 898
FaeI	CATG	4 cut(s)	146, 602, 917, 1020
FalI	AAGNNNNNCTT	2 cut(s)	690, 722
FatI	CATG	4 cut(s)	142, 598, 913, 1016
FbaI	TGATCA	1 cut(s)	747
Fnu4HI	GCNGC	3 cut(s)	88, 379, 949
FokI	GGATG	3 cut(s)	438, 773, 912
Fsp4HI	GCNGC	3 cut(s)	88, 379, 949
FspBI	CTAG	1 cut(s)	1090
GlaI	GCGC	1 cut(s)	738
GluI	GCNGC	3 cut(s)	88, 379, 949
GsuI	CTGGAG	2 cut(s)	191, 216
HaeII	RGCGCY	1 cut(s)	740
HaeIII	GGCC	3 cut(s)	325, 427, 696
HapII	CCGG	2 cut(s)	634, 693
HhaI	GCGC	1 cut(s)	739
Hin1I	GRCGYC	1 cut(s)	737
Hin1II	CATG	4 cut(s)	146, 602, 917, 1020
Hin6I	GCGC	1 cut(s)	737
HinP1I	GCGC	1 cut(s)	737
HindIII	AAGCTT	2 cut(s)	440, 1070
HinfI	GANTC	8 cut(s)	28, 296, 364, 448, 472, 506, 682, 710
HpaII	CCGG	2 cut(s)	634, 693
HphI	GGTGA	5 cut(s)	199, 209, 368, 446, 1023
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188I	TCNGA	4 cut(s)	192, 217, 447, 658
Hpy188III	TCNNGA	4 cut(s)	679, 793, 914, 929
Hpy8I	GTNNAC	1 cut(s)	333
HpyAV	CCTTC	3 cut(s)	683, 817, 1038
HpyCH4III	ACNGT	2 cut(s)	52, 788
HpyCH4V	TGCA	9 cut(s)	68, 90, 286, 338, 381, 422, 764, 893, 951
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1069
Hsp92I	GRCGYC	1 cut(s)	737
Hsp92II	CATG	4 cut(s)	146, 602, 917, 1020
HspAI	GCGC	1 cut(s)	737
KasI	GGCGCC	1 cut(s)	736
KroI	GCCGGC	1 cut(s)	692
KroNI	GCCGGC	1 cut(s)	694
Ksp22I	TGATCA	1 cut(s)	747
Kzo9I	GATC	3 cut(s)	534, 747, 795
LguI	GCTCTTC	1 cut(s)	632
LmnI	GCTCC	2 cut(s)	235, 484
Lsp1109I	GCAGC	3 cut(s)	74, 365, 935
LweI	GCATC	2 cut(s)	390, 751
MaeI	CTAG	1 cut(s)	1090
MaeIII	GTNAC	3 cut(s)	293, 810, 973
MalI	GATC	3 cut(s)	536, 749, 797
MboI	GATC	3 cut(s)	534, 747, 795
MflI	RGATCY	1 cut(s)	534
MluCI	AATT	6 cut(s)	350, 394, 525, 594, 909, 995
Mly113I	GGCGCC	1 cut(s)	737
MlyI	GAGTC	3 cut(s)	290, 481, 515
MmeI	TCCRAC	1 cut(s)	279
MroNI	GCCGGC	1 cut(s)	692
MroXI	GAANNNNTTC	1 cut(s)	363
MslI	CAYNNNNRTG	1 cut(s)	147
MspI	CCGG	2 cut(s)	634, 693
MspR9I	CCNGG	1 cut(s)	234
Mva1269I	GAATGC	1 cut(s)	719
MvaI	CCWGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	1069
NaeI	GCCGGC	1 cut(s)	694
NarI	GGCGCC	1 cut(s)	737
NdeII	GATC	3 cut(s)	534, 747, 795
NgoMIV	GCCGGC	1 cut(s)	692
NlaIII	CATG	4 cut(s)	146, 602, 917, 1020
NlaIV	GGNNCC	5 cut(s)	389, 402, 480, 738, 828
NmuCI	GTSAC	1 cut(s)	293
NspI	RCATGY	1 cut(s)	1020
PagI	TCATGA	1 cut(s)	913
PceI	AGGCCT	1 cut(s)	325
PciI	ACATGT	1 cut(s)	1016
PciSI	GCTCTTC	1 cut(s)	632
PctI	GAATGC	1 cut(s)	719
PdiI	GCCGGC	1 cut(s)	694
PdmI	GAANNNNTTC	1 cut(s)	363
PfeI	GAWTC	5 cut(s)	28, 364, 448, 682, 710
PfoI	TCCNGGA	1 cut(s)	232
PkrI	GCNGC	3 cut(s)	89, 380, 950
PleI	GAGTC	3 cut(s)	290, 480, 514
PluTI	GGCGCC	1 cut(s)	740
PpsI	GAGTC	3 cut(s)	290, 480, 514
PpuMI	RGGWCCY	1 cut(s)	202
PscI	ACATGT	1 cut(s)	1016
Psp5II	RGGWCCY	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	5 cut(s)	389, 402, 480, 738, 828
PspPI	GGNCC	2 cut(s)	202, 425
PspPPI	RGGWCCY	1 cut(s)	202
PstNI	CAGNNNCTG	1 cut(s)	948
PsuI	RGATCY	1 cut(s)	534
RsaI	GTAC	2 cut(s)	36, 334
RsaNI	GTAC	2 cut(s)	35, 333
RseI	CAYNNNNRTG	1 cut(s)	147
SapI	GCTCTTC	1 cut(s)	632
SatI	GCNGC	3 cut(s)	88, 379, 949
Sau3AI	GATC	3 cut(s)	534, 747, 795
Sau96I	GGNCC	2 cut(s)	202, 425
SchI	GAGTC	3 cut(s)	290, 481, 515
ScrFI	CCNGG	1 cut(s)	234
SfaNI	GCATC	2 cut(s)	390, 751
SfoI	GGCGCC	1 cut(s)	738
SinI	GGWCC	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	147
SmlI	CTYRAG	2 cut(s)	608, 806
SmoI	CTYRAG	2 cut(s)	608, 806
Sse9I	AATT	6 cut(s)	350, 394, 525, 594, 909, 995
SseBI	AGGCCT	1 cut(s)	325
SspDI	GGCGCC	1 cut(s)	736
SspMI	CTAG	1 cut(s)	1090
StuI	AGGCCT	1 cut(s)	325
StyD4I	CCNGG	1 cut(s)	232
StyI	CCWWGG	2 cut(s)	724, 898
TaaI	ACNGT	2 cut(s)	52, 788
TaqI	TCGA	1 cut(s)	630
TasI	AATT	6 cut(s)	350, 394, 525, 594, 909, 995
TatI	WGTACW	1 cut(s)	332
TfiI	GAWTC	5 cut(s)	28, 364, 448, 682, 710
TscAI	CASTG	4 cut(s)	306, 580, 694, 1044
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	3 cut(s)	87, 378, 948
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	9 cut(s)	17, 159, 440, 587, 640, 783, 902, 930, 978
TspGWI	ACGGA	1 cut(s)	444
TspRI	CASTG	4 cut(s)	306, 580, 694, 1044
VpaK11BI	GGWCC	1 cut(s)	202
XapI	RAATTY	2 cut(s)	350, 909
XceI	RCATGY	1 cut(s)	1020
XcmI	CCANNNNNNNNNTGG	1 cut(s)	149
XmnI	GAANNNNTTC	1 cut(s)	363
XspI	CTAG	1 cut(s)	1090

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.