Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0013548

Physical Location & Seq

Genomic Coordinates Forward (+)

17682758 .. 17684410

Gene Structure 1653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g18860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGAACAGAACCCAGGTGCTAAATTTGATTCTTGCACTGACTTCATCAACAACTTTGGTGTTTTTCCTACTTTTCATCTACTTTTACTGCAAGAAAACTGCAAAGAGTGAGCAAAAGGATGTGGAAAAAACAGAGCAGAAGCAAGAGGAAGTTGTGGAGGCAGAGGAGCTGGTGACTTTTCAGGATGGGGAGGACTTAACAATATGTGACATTCTGGATGCTCCGGGGGAAGTGATCGGAAAATCAAACTACGGTACGCTGTATAAGGCGCTGTTGCAGAGCAGCAACTCGGTGAAGTTGCTGAGGTTTTTGAGGCCTGTTTGCACTGCAAAAGTTCAAGATTTTGGTGAAGTTGTTCGGCTTTTGGGGTGCATAAGGCATCATAATTTGGTCCCTCTTTTGGGATTTTATGCAGGGCCGAGAGGTGAGAAGCTTTTGATTCATCCGTTTTATTGGCGCGGCAATCTGGCTCAGTTTGTGAGAGAAAGCAATCCTGATTCTCACAAATGGCCCATAATCTATAAAATCTCAGTTGGTATAGCCGAAGGCTTGGATCACCTTCACACCGGCTTTGAAAGGCCGATAATTCACGGCAATCTCAAGTCGAAAAACATACTCTTGGGTCACCATTATTGCCCTTTCATATCCGATTTCAGCCTCCATCTTCTGCTGAATCCAACTGCTGGCCATGAAATGCTTGAAGTCTCGGCATCCGAAGGCTACAAAGCACCTGAGCTGATGAAAATGAGGGATGCAAACGAAGAGACCGATATATACAGTCTTGGGGTTATCTTGCTTGAATTTCTCACAGGGAAGGAACCCATCAACCAAAACCCTACAACTCCTGATGAGGATTTTAGTTTGCCAGATTTCATGAGAAATGCAGTGCTTGGACATAGAATTCATGACTTGTTCCATCCAGATTTGCTTCTCAATAGCAGCGTTGGCTACGGAGAAATCCCCGTCACAAAAGAAAGGATTCTCAAATTCTTTCAGCTTGCTATGGCATGTTGTGCTCCTTCTCCATCACTTAGACCAAACTCCAAGCAAGTTCTGTCGAAGCTTGAAGAAATTGGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

361

Amino Acids

40.64

Weight (kDa)

5.97

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07620
fragaria_vesca	FvH4_7g27020
malus_domestica	MD01G1177800.v1.1 MD07G1249600.v1.1
prunus_persica	Prupe.2G273300_v2.0.a1
pyrus_communis	pycom01g18860 pycom07g22290 pycom07g22300
rosa_chinensis	RchiOBHm_Chr1g0373821
rosa_laevigata	RLG00000026803
rosa_multiflora	Rmu_sc0013735.1_g000009
rosa_roxburghii	Rroxscaffold_4G00283980
rosa_rugosa	Rorug01G0379500
rosa_samantha	Rh1AG389000 Rh1BG353200 Rh1CG366400 Rh1DG384100
rosa_wichuraiana	Rw1G034620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	683
AccII	CGCG	1 cut(s)	459
AciI	CCGC	1 cut(s)	459
AclWI	GGATC	1 cut(s)	561
AcoI	YGGCCR	1 cut(s)	685
AcsI	RAATTY	4 cut(s)	22, 800, 900, 986
AfaI	GTAC	1 cut(s)	256
AfiI	CCNNNNNNNGG	3 cut(s)	400, 401, 683
AgsI	TTSAA	5 cut(s)	338, 575, 701, 800, 1067
AjnI	CCWGG	1 cut(s)	12
AluBI	AGCT	5 cut(s)	169, 433, 736, 997, 1063
AluI	AGCT	5 cut(s)	169, 433, 736, 997, 1063
Alw21I	GWGCWC	1 cut(s)	1018
Alw26I	GTCTC	2 cut(s)	709, 758
AlwI	GGATC	1 cut(s)	561
AoxI	GGCC	5 cut(s)	314, 416, 509, 578, 685
ApeKI	GCWGC	2 cut(s)	282, 939
ApoI	RAATTY	4 cut(s)	22, 800, 900, 986
Asp700I	GAANNNNTTC	2 cut(s)	354, 978
AspLEI	GCGC	2 cut(s)	271, 459
AspS9I	GGNCC	3 cut(s)	391, 416, 510
AsuC2I	CCSGG	1 cut(s)	225
AsuHPI	GGTGA	6 cut(s)	184, 304, 359, 437, 548, 617
AvaII	GGWCC	1 cut(s)	391
BalI	TGGCCA	1 cut(s)	687
Bbv12I	GWGCWC	1 cut(s)	1018
BbvCI	CCTCAGC	1 cut(s)	302
BbvI	GCAGC	2 cut(s)	294, 951
BccI	CCATC	5 cut(s)	179, 669, 830, 924, 1033
BceAI	ACGGC	1 cut(s)	607
BciT130I	CCWGG	1 cut(s)	14
BcnI	CCSGG	1 cut(s)	225
BcoDI	GTCTC	2 cut(s)	709, 758
BfoI	RGCGCY	1 cut(s)	272
BisI	GCNGC	3 cut(s)	283, 460, 940
BlsI	GCNGC	3 cut(s)	284, 461, 941
Bme1390I	CCNGG	2 cut(s)	14, 225
Bme18I	GGWCC	1 cut(s)	391
BmgT120I	GGNCC	3 cut(s)	391, 416, 510
BmiI	GGNNCC	2 cut(s)	393, 819
BmrFI	CCNGG	2 cut(s)	14, 225
BmsI	GCATC	4 cut(s)	208, 388, 719, 742
Bpu10I	CCTNAGC	2 cut(s)	302, 732
BpuEI	CTTGAG	1 cut(s)	584
BpuMI	CCSGG	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	758
BsaJI	CCNNGG	2 cut(s)	12, 224
Bsc4I	CCNNNNNNNGG	3 cut(s)	400, 401, 683
Bse118I	RCCGGY	1 cut(s)	566
BseBI	CCWGG	1 cut(s)	14
BseDI	CCNNGG	2 cut(s)	12, 224
BseGI	GGATG	7 cut(s)	124, 190, 223, 442, 710, 757, 916
BseLI	CCNNNNNNNGG	3 cut(s)	400, 401, 683
BseMII	CTCAG	4 cut(s)	293, 485, 543, 723
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	2 cut(s)	294, 951
Bsh1236I	CGCG	1 cut(s)	459
BshFI	GGCC	5 cut(s)	316, 418, 511, 580, 687
BsiHKAI	GWGCWC	1 cut(s)	1018
BsiSI	CCGG	2 cut(s)	224, 567
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	3 cut(s)	400, 401, 683
BsmAI	GTCTC	2 cut(s)	709, 758
BsmFI	GGGAC	1 cut(s)	377
BsnI	GGCC	5 cut(s)	316, 418, 511, 580, 687
Bso31I	GGTCTC	1 cut(s)	758
Bsp1286I	GDGCHC	1 cut(s)	1018
Bsp143I	GATC	2 cut(s)	234, 553
BspACI	CCGC	1 cut(s)	459
BspANI	GGCC	5 cut(s)	316, 418, 511, 580, 687
BspCNI	CTCAG	4 cut(s)	294, 484, 542, 724
BspFNI	CGCG	1 cut(s)	459
BspHI	TCATGA	2 cut(s)	873, 904
BspLI	GGNNCC	2 cut(s)	393, 819
BspPI	GGATC	1 cut(s)	561
BspTNI	GGTCTC	1 cut(s)	758
BsrFI	RCCGGY	1 cut(s)	566
BssAI	RCCGGY	1 cut(s)	566
BssECI	CCNNGG	2 cut(s)	12, 224
BssMI	GATC	2 cut(s)	234, 553
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	2 cut(s)	254, 779
Bst6I	CTCTTC	1 cut(s)	756
BstAPI	GCANNNNNTGC	1 cut(s)	1013
BstC8I	GCNNGC	2 cut(s)	685, 999
BstDEI	CTNAG	5 cut(s)	302, 471, 529, 732, 1031
BstEII	GGTNACC	1 cut(s)	623
BstF5I	GGATG	7 cut(s)	124, 190, 223, 442, 710, 757, 916
BstFNI	CGCG	1 cut(s)	459
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	2 cut(s)	271, 459
BstKTI	GATC	2 cut(s)	237, 556
BstMAI	GTCTC	2 cut(s)	709, 758
BstMBI	GATC	2 cut(s)	234, 553
BstMWI	GCNNNNNNNGC	2 cut(s)	945, 1013
BstNI	CCWGG	1 cut(s)	14
BstNSI	RCATGY	1 cut(s)	1011
BstPI	GGTNACC	1 cut(s)	623
BstSCI	CCNGG	2 cut(s)	12, 223
BstUI	CGCG	1 cut(s)	459
BstV1I	GCAGC	2 cut(s)	294, 951
BsuRI	GGCC	5 cut(s)	316, 418, 511, 580, 687
BtsCI	GGATG	7 cut(s)	124, 190, 223, 442, 710, 757, 916
BtsI	GCAGTG	2 cut(s)	324, 891
BtsIMutI	CAGTG	3 cut(s)	35, 324, 891
Cac8I	GCNNGC	2 cut(s)	685, 999
CciI	TCATGA	2 cut(s)	873, 904
CfoI	GCGC	2 cut(s)	271, 459
Cfr10I	RCCGGY	1 cut(s)	566
Cfr13I	GGNCC	3 cut(s)	391, 416, 510
Csp6I	GTAC	1 cut(s)	255
CviAII	CATG	4 cut(s)	689, 874, 905, 1008
CviQI	GTAC	1 cut(s)	255
DdeI	CTNAG	5 cut(s)	302, 471, 529, 732, 1031
DpnI	GATC	2 cut(s)	236, 555
DpnII	GATC	2 cut(s)	234, 553
EaeI	YGGCCR	1 cut(s)	685
Eam1104I	CTCTTC	1 cut(s)	756
EarI	CTCTTC	1 cut(s)	756
Eco147I	AGGCCT	1 cut(s)	316
Eco31I	GGTCTC	1 cut(s)	758
Eco47I	GGWCC	1 cut(s)	391
Eco91I	GGTNACC	1 cut(s)	623
EcoO65I	GGTNACC	1 cut(s)	623
EcoRI	GAATTC	1 cut(s)	900
EcoRII	CCWGG	1 cut(s)	12
FaeI	CATG	4 cut(s)	692, 877, 908, 1011
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	4 cut(s)	688, 873, 904, 1007
Fnu4HI	GCNGC	3 cut(s)	283, 460, 940
FokI	GGATG	7 cut(s)	131, 197, 230, 429, 697, 764, 903
Fsp4HI	GCNGC	3 cut(s)	283, 460, 940
GlaI	GCGC	2 cut(s)	270, 458
GluI	GCNGC	3 cut(s)	283, 460, 940
HaeII	RGCGCY	1 cut(s)	272
HaeIII	GGCC	5 cut(s)	316, 418, 511, 580, 687
HapII	CCGG	2 cut(s)	224, 567
HhaI	GCGC	2 cut(s)	271, 459
Hin1II	CATG	4 cut(s)	692, 877, 908, 1011
Hin6I	GCGC	2 cut(s)	269, 457
HinP1I	GCGC	2 cut(s)	269, 457
HindIII	AAGCTT	2 cut(s)	431, 1061
HinfI	GANTC	5 cut(s)	28, 439, 497, 673, 979
HpaII	CCGG	2 cut(s)	224, 567
HphI	GGTGA	6 cut(s)	184, 304, 359, 437, 548, 617
Hpy188I	TCNGA	3 cut(s)	239, 649, 715
Hpy188III	TCNNGA	8 cut(s)	182, 215, 338, 494, 845, 874, 905, 920
HpyAV	CCTTC	5 cut(s)	539, 569, 710, 808, 1029
HpyCH4III	ACNGT	2 cut(s)	254, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	945, 1013
HpyF3I	CTNAG	5 cut(s)	302, 471, 529, 732, 1031
Hsp92II	CATG	4 cut(s)	692, 877, 908, 1011
HspAI	GCGC	2 cut(s)	269, 457
Kzo9I	GATC	2 cut(s)	234, 553
LmnI	GCTCC	3 cut(s)	166, 226, 1021
Lsp1109I	GCAGC	2 cut(s)	294, 951
LweI	GCATC	4 cut(s)	208, 388, 719, 742
MaeIII	GTNAC	4 cut(s)	172, 206, 623, 964
MalI	GATC	2 cut(s)	236, 555
MboI	GATC	2 cut(s)	234, 553
MboII	GAAGA	3 cut(s)	656, 773, 1079
MhlI	GDGCHC	1 cut(s)	1018
MlsI	TGGCCA	1 cut(s)	687
MluCI	AATT	7 cut(s)	22, 385, 585, 800, 900, 986, 1071
MluNI	TGGCCA	1 cut(s)	687
MmeI	TCCRAC	1 cut(s)	701
Mox20I	TGGCCA	1 cut(s)	687
MroXI	GAANNNNTTC	2 cut(s)	354, 978
MscI	TGGCCA	1 cut(s)	687
MseI	TTAA	1 cut(s)	197
Msp20I	TGGCCA	1 cut(s)	687
MspI	CCGG	2 cut(s)	224, 567
MspR9I	CCNGG	2 cut(s)	14, 225
MvaI	CCWGG	1 cut(s)	14
MvnI	CGCG	1 cut(s)	459
MwoI	GCNNNNNNNGC	2 cut(s)	945, 1013
NciI	CCSGG	1 cut(s)	225
NdeII	GATC	2 cut(s)	234, 553
NlaIII	CATG	4 cut(s)	692, 877, 908, 1011
NlaIV	GGNNCC	2 cut(s)	393, 819
NmeAIII	GCCGAG	2 cut(s)	444, 686
NmuCI	GTSAC	4 cut(s)	172, 206, 623, 964
NspI	RCATGY	1 cut(s)	1011
PagI	TCATGA	2 cut(s)	873, 904
PceI	AGGCCT	1 cut(s)	316
PcsI	WCGNNNNNNNCGW	1 cut(s)	765
PdmI	GAANNNNTTC	2 cut(s)	354, 978
PfeI	GAWTC	5 cut(s)	28, 439, 497, 673, 979
PflMI	CCANNNNNTGG	1 cut(s)	683
PkrI	GCNGC	3 cut(s)	284, 461, 941
Psp6I	CCWGG	1 cut(s)	12
PspEI	GGTNACC	1 cut(s)	623
PspGI	CCWGG	1 cut(s)	12
PspN4I	GGNNCC	2 cut(s)	393, 819
PspPI	GGNCC	3 cut(s)	391, 416, 510
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	197
SatI	GCNGC	3 cut(s)	283, 460, 940
Sau3AI	GATC	2 cut(s)	234, 553
Sau96I	GGNCC	3 cut(s)	391, 416, 510
ScrFI	CCNGG	2 cut(s)	14, 225
SduI	GDGCHC	1 cut(s)	1018
SfaNI	GCATC	4 cut(s)	208, 388, 719, 742
SinI	GGWCC	1 cut(s)	391
SmlI	CTYRAG	1 cut(s)	599
SmoI	CTYRAG	1 cut(s)	599
Sse9I	AATT	7 cut(s)	22, 385, 585, 800, 900, 986, 1071
SseBI	AGGCCT	1 cut(s)	316
SsiI	CCGC	1 cut(s)	459
StuI	AGGCCT	1 cut(s)	316
StyD4I	CCNGG	2 cut(s)	12, 223
TaaI	ACNGT	2 cut(s)	254, 779
TaqI	TCGA	2 cut(s)	605, 1058
TaqII	GACCGA	1 cut(s)	782
TasI	AATT	7 cut(s)	22, 385, 585, 800, 900, 986, 1071
TauI	GCSGC	1 cut(s)	462
TfiI	GAWTC	5 cut(s)	28, 439, 497, 673, 979
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197
TscAI	CASTG	3 cut(s)	42, 331, 891
TseFI	GTSAC	4 cut(s)	172, 206, 623, 964
TseI	GCWGC	2 cut(s)	282, 939
Tsp45I	GTSAC	4 cut(s)	172, 206, 623, 964
TspDTI	ATGAA	9 cut(s)	17, 33, 64, 431, 631, 705, 755, 862, 893
TspGWI	ACGGA	2 cut(s)	435, 966
TspRI	CASTG	3 cut(s)	42, 331, 891
Van91I	CCANNNNNTGG	1 cut(s)	683
VpaK11BI	GGWCC	1 cut(s)	391
XapI	RAATTY	4 cut(s)	22, 800, 900, 986
XceI	RCATGY	1 cut(s)	1011
XmnI	GAANNNNTTC	2 cut(s)	354, 978

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.