AT5G08005

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013826
Physical Location & Seq
Forward (+)
2565753 .. 2567385
1633 bp
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UTR
Exon/CDS
Intron
AT5G08005.1

Sequence Viewer

Length: 459 bp
ATGGAGAATCCAACCGGACCTTGTCAGGTATGTGGGGATATCGGCTATAAGGATTTGATAATGACTTGTTTCAACTGCAGAGAAGTTAGAGAACATATTTATTGCGCAGCAGTCTTGTTACGATCTGTACCCGGTATATGGTTATGTCAAGAGTGCAGAACCTCGACTCGCGTGTTACAGATATCGCATCATGTGAACAACTCAACTAATAGCGGTAAGAAAGAAACTTCTATGCCGGTTCAAAATGGTGGCTTGAGACTTCATCAGCCTCCTCATGTACCCATGTTGCTAGCACAATCATCTACTAATAAAGCTTCTTTGGTGCCCAATGATACATCTCCAATCAAGAAACACCGACCACCTTTTTTGGCTTTTCCTTCTCCAAAAAGAAAACGTAGGACGCTTCGGCTTGCAGAAGGACATACCGAAGAAACTAAACGTCAAAGCTCACATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

152

Amino Acids

17.06

Weight (kDa)

9.63

Isoelectric Point (pI)

63.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013826)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08005 AT5G61100 AT5G61100 AT5G61110
fragaria_vesca FvH4_5g13941
malus_domestica MD06G1202100.v1.1
prunus_persica Prupe.5G204000_v2.0.a1 Prupe.5G204100_v2.0.a1
pyrus_communis pycom06g17810
rosa_chinensis RchiOBHm_Chr7g0183011
rosa_laevigata RLG00000005090
rosa_roxburghii Rroxscaffold_3G00270880
rosa_rugosa Rorug06G0451600
rosa_samantha Rh7AG054900 Rh7BG054400 Rh7DG054500
rosa_wichuraiana Rw7G004480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 106
AccB1I GGYRCC 1 cut(s) 322
AccII CGCG 1 cut(s) 171
AciI CCGC 1 cut(s) 213
AfaI GTAC 2 cut(s) 129, 279
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 2 cut(s) 73, 242
AluBI AGCT 2 cut(s) 314, 447
AluI AGCT 2 cut(s) 314, 447
Alw26I GTCTC 1 cut(s) 250
ApeKI GCWGC 1 cut(s) 107
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 17
AsuC2I CCSGG 1 cut(s) 132
AsuNHI GCTAGC 1 cut(s) 289
AvaII GGWCC 1 cut(s) 17
BaeGI GKGCMC 1 cut(s) 327
BanI GGYRCC 1 cut(s) 322
BbvI GCAGC 1 cut(s) 119
BcnI CCSGG 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 250
BfaI CTAG 1 cut(s) 290
BfmI CTRYAG 1 cut(s) 76
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 132
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 324
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 1 cut(s) 196
BmtI GCTAGC 1 cut(s) 293
BpuEI CTTGAG 1 cut(s) 274
BpuMI CCSGG 1 cut(s) 132
BsaWI WCCGGW 1 cut(s) 14
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse118I RCCGGY 1 cut(s) 235
BseGI GGATG 1 cut(s) 451
BseLI CCNNNNNNNGG 1 cut(s) 138
BseRI GAGGAG 1 cut(s) 261
BseSI GKGCMC 1 cut(s) 327
BseXI GCAGC 1 cut(s) 119
BsgI GTGCAG 1 cut(s) 175
Bsh1236I CGCG 1 cut(s) 171
BshNI GGYRCC 1 cut(s) 322
BsiSI CCGG 3 cut(s) 15, 132, 236
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 250
Bsp1286I GDGCHC 1 cut(s) 327
Bsp143I GATC 1 cut(s) 122
BspACI CCGC 1 cut(s) 213
BspFNI CGCG 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 324
BspMAI CTGCAG 1 cut(s) 80
BspOI GCTAGC 1 cut(s) 293
BspT107I GGYRCC 1 cut(s) 322
BsrFI RCCGGY 1 cut(s) 235
BssAI RCCGGY 1 cut(s) 235
BssMI GATC 1 cut(s) 122
BstC8I GCNNGC 2 cut(s) 291, 411
BstF5I GGATG 1 cut(s) 451
BstFNI CGCG 1 cut(s) 171
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 1 cut(s) 125
BstMAI GTCTC 1 cut(s) 250
BstMBI GATC 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 130
BstSFI CTRYAG 1 cut(s) 76
BstSLI GKGCMC 1 cut(s) 327
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 1 cut(s) 119
BtsCI GGATG 1 cut(s) 451
Cac8I GCNNGC 2 cut(s) 291, 411
CfoI GCGC 1 cut(s) 107
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 17
CseI GACGC 1 cut(s) 409
Csp6I GTAC 2 cut(s) 128, 278
CspCI CAANNNNNGTGG 2 cut(s) 348, 383
CviAII CATG 3 cut(s) 191, 275, 283
CviJI RGCY 7 cut(s) 45, 252, 268, 314, 371, 409, 447
CviKI_1 RGCY 7 cut(s) 45, 252, 268, 314, 371, 409, 447
CviQI GTAC 2 cut(s) 128, 278
DpnI GATC 1 cut(s) 124
DpnII GATC 1 cut(s) 122
Eco32I GATATC 2 cut(s) 40, 183
Eco47I GGWCC 1 cut(s) 17
EcoRV GATATC 2 cut(s) 40, 183
FaeI CATG 3 cut(s) 194, 278, 286
FatI CATG 3 cut(s) 190, 274, 282
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 1 cut(s) 438
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 1 cut(s) 290
FspI TGCGCA 1 cut(s) 106
GlaI GCGC 1 cut(s) 106
GluI GCNGC 1 cut(s) 108
HapII CCGG 3 cut(s) 15, 132, 236
HgaI GACGC 1 cut(s) 409
HhaI GCGC 1 cut(s) 107
Hin1II CATG 3 cut(s) 194, 278, 286
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HindIII AAGCTT 1 cut(s) 312
HinfI GANTC 2 cut(s) 7, 166
HpaII CCGG 3 cut(s) 15, 132, 236
Hpy166II GTNNAC 1 cut(s) 196
Hpy188III TCNNGA 2 cut(s) 149, 346
Hpy8I GTNNAC 1 cut(s) 196
HpyAV CCTTC 2 cut(s) 387, 410
HpyCH4IV ACGT 2 cut(s) 394, 439
HpyCH4V TGCA 3 cut(s) 78, 156, 413
HpySE526I ACGT 2 cut(s) 394, 439
Hsp92II CATG 3 cut(s) 194, 278, 286
HspAI GCGC 1 cut(s) 105
Kzo9I GATC 1 cut(s) 122
LpnPI CCDG 4 cut(s) 11, 28, 145, 249
Lsp1109I GCAGC 1 cut(s) 119
LweI GCATC 1 cut(s) 196
MaeI CTAG 1 cut(s) 290
MaeII ACGT 2 cut(s) 394, 439
MaeIII GTNAC 2 cut(s) 117, 174
MalI GATC 1 cut(s) 124
MboI GATC 1 cut(s) 122
MboII GAAGA 1 cut(s) 440
MhlI GDGCHC 1 cut(s) 327
MlyI GAGTC 1 cut(s) 160
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 3 cut(s) 172, 279, 282
MseI TTAA 1 cut(s) 457
MspI CCGG 3 cut(s) 15, 132, 236
MspR9I CCNGG 1 cut(s) 132
MvnI CGCG 1 cut(s) 171
NciI CCSGG 1 cut(s) 132
NdeII GATC 1 cut(s) 122
NheI GCTAGC 1 cut(s) 289
NlaIII CATG 3 cut(s) 194, 278, 286
NlaIV GGNNCC 1 cut(s) 324
NsbI TGCGCA 1 cut(s) 106
PfeI GAWTC 1 cut(s) 7
PflFI GACNNNGTC 1 cut(s) 21
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 324
PspPI GGNCC 1 cut(s) 17
PstI CTGCAG 1 cut(s) 80
PsyI GACNNNGTC 1 cut(s) 21
RsaI GTAC 2 cut(s) 129, 279
RsaNI GTAC 2 cut(s) 128, 278
SaqAI TTAA 1 cut(s) 457
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 1 cut(s) 122
Sau96I GGNCC 1 cut(s) 17
SchI GAGTC 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 1 cut(s) 327
SetI ASST 8 cut(s) 22, 30, 164, 316, 364, 397, 442, 449
SfaNI GCATC 1 cut(s) 196
SfcI CTRYAG 1 cut(s) 76
SinI GGWCC 1 cut(s) 17
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
SsiI CCGC 1 cut(s) 213
SspMI CTAG 1 cut(s) 290
StyD4I CCNGG 1 cut(s) 130
TaiI ACGT 2 cut(s) 397, 442
TaqI TCGA 1 cut(s) 164
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 457
Tru9I TTAA 1 cut(s) 457
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 1 cut(s) 251
Tth111I GACNNNGTC 1 cut(s) 21
VpaK11BI GGWCC 1 cut(s) 17
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.