Prupe.5G204000_v2.0.a1

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0013826
Physical Location & Seq
Forward (+)
16370917 .. 16377464
6548 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G204000.1

Sequence Viewer

Length: 1038 bp
ATGGTGGACCAAGCTTTCATTGTAGCATTAGTTTCTCTCACCAACCTCCTAGTTTTACTCTCAGACCTGGGTTTAATTACAAGTGACACGAAGAGAGAGATAGAAAGAATGAGACAATGCAACCGGGTAGAAAAGTTTTTCTTCTTTGTTAAAAAATTATATCCTATTATATATGCACAGAAAGGTTTACTAGAAATACGAGAGATTGCAAGATCAGTGGAGACCCTCCTCCTCCACATGGTTACAAGTTACAACAATTTTTTAATCCAATTTATAGCCGCGCGGCTGTACCGGGCTATTTTACCGAATCTCTCTATCGGTACCCGCCAGCTTCAGCCGCCATTAGAGAGCAGAGCAGAGCACCAAGAAATTTGTTTTTGTAAAAGAATACTATTAGAAAAAGCGAGAGGTCCAAGAAAGACCCACATGGACAAAACTTGTGATGTATGCGGTGGAACAGGCTTTGTAGAGTTGATTGCTACTTGCTTTCAATGTAAAATAGCTTGGGAACACGTCTATTGTATACAGGTCCTCCTCAAATATGTTCCAGAAATTTGGTTTTGTGAGACATGTTGTTCTGGAGATCAGTCACTCAAAAATCTAAGGCTTGTTGAAGAGTCAGGCAGTTCAGGTCATCTTCGAAAGCGAACTTCCTTGGGAACTGCCAAAGTAAAGTTTATTCCTATTGAAAAAGCTCTTAAAATGTCATCTGGAGCTCAAAAGGTGGAATTGCCCTCACCAAGTAAATTGCACTCAAGCTCTATCCGAATAGATACCATGGAAACAATGTCTAGAAGGGCTTCCACTGAGTTAAAATCTACCCCTCAAAAAAATTCTTCACAGAACGTGAAGGAAACTTACAAAAATTTACCTGCTGGACATTTAAAGCTTTCTGGACATGGCAGTGAAAAAATCAGTTCAATCACTCCTGCACAAGAGCCTAAATGTTGTACTGAATTAAAATGTAAGATAACTCTAACGTCTATTGCATGGAAAACTTTTGTGAAAAAATTTGGCAAACACAAGGGTCAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

346

Amino Acids

39.02

Weight (kDa)

9.49

Isoelectric Point (pI)

40.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013826)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08005 AT5G61100 AT5G61100 AT5G61110
fragaria_vesca FvH4_5g13941
malus_domestica MD06G1202100.v1.1
prunus_persica Prupe.5G204000_v2.0.a1 Prupe.5G204100_v2.0.a1
pyrus_communis pycom06g17810
rosa_chinensis RchiOBHm_Chr7g0183011
rosa_laevigata RLG00000005090
rosa_roxburghii Rroxscaffold_3G00270880
rosa_rugosa Rorug06G0451600
rosa_samantha Rh7AG054900 Rh7BG054400 Rh7DG054500
rosa_wichuraiana Rw7G004480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 880
Acc65I GGTACC 1 cut(s) 320
AccB1I GGYRCC 1 cut(s) 320
AccI GTMKAC 1 cut(s) 523
AccII CGCG 2 cut(s) 281, 283
AciI CCGC 5 cut(s) 279, 283, 325, 338, 450
AcsI RAATTY 5 cut(s) 369, 552, 832, 865, 1010
AcuI CTGAAG 1 cut(s) 317
AfaI GTAC 3 cut(s) 290, 322, 952
AfiI CCNNNNNNNGG 1 cut(s) 238
AflIII ACRYGT 2 cut(s) 511, 569
AgsI TTSAA 4 cut(s) 491, 614, 689, 921
AjiI CACGTC 1 cut(s) 514
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 7 cut(s) 14, 331, 503, 695, 716, 759, 889
AluI AGCT 7 cut(s) 14, 331, 503, 695, 716, 759, 889
Alw21I GWGCWC 2 cut(s) 363, 718
Alw26I GTCTC 3 cut(s) 106, 215, 560
ApoI RAATTY 5 cut(s) 369, 552, 832, 865, 1010
Asp700I GAANNNNTTC 1 cut(s) 799
Asp718I GGTACC 1 cut(s) 320
AspLEI GCGC 1 cut(s) 283
AspS9I GGNCC 3 cut(s) 7, 410, 529
AsuC2I CCSGG 2 cut(s) 125, 293
AsuHPI GGTGA 2 cut(s) 31, 729
AsuII TTCGAA 1 cut(s) 640
AvaII GGWCC 3 cut(s) 7, 410, 529
BanI GGYRCC 1 cut(s) 320
BanII GRGCYC 1 cut(s) 718
BarI GAAGNNNNNNTAC 2 cut(s) 842, 874
Bbv12I GWGCWC 2 cut(s) 363, 718
BciT130I CCWGG 1 cut(s) 68
BcnI CCSGG 2 cut(s) 125, 293
BcoDI GTCTC 3 cut(s) 106, 215, 560
BfaI CTAG 3 cut(s) 50, 191, 792
BfuAI ACCTGC 1 cut(s) 880
BisI GCNGC 3 cut(s) 279, 284, 338
BlsI GCNGC 3 cut(s) 280, 285, 339
Bme1390I CCNGG 3 cut(s) 68, 125, 293
Bme18I GGWCC 3 cut(s) 7, 410, 529
BmgBI CACGTC 1 cut(s) 514
BmgT120I GGNCC 3 cut(s) 7, 410, 529
BmiI GGNNCC 1 cut(s) 322
BmrFI CCNGG 3 cut(s) 68, 125, 293
BpmI CTGGAG 2 cut(s) 600, 732
Bpu14I TTCGAA 1 cut(s) 640
BpuEI CTTGAG 1 cut(s) 739
BpuMI CCSGG 2 cut(s) 125, 293
BsaI GGTCTC 1 cut(s) 215
BsaJI CCNNGG 3 cut(s) 67, 654, 777
BsaXI ACNNNNNCTCC 2 cut(s) 516, 546
Bsc4I CCNNNNNNNGG 1 cut(s) 238
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 3 cut(s) 67, 654, 777
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMII CTCAG 2 cut(s) 75, 798
BseRI GAGGAG 3 cut(s) 218, 221, 524
BsgI GTGCAG 1 cut(s) 915
Bsh1236I CGCG 2 cut(s) 281, 283
BshNI GGYRCC 1 cut(s) 320
BsiHKAI GWGCWC 2 cut(s) 363, 718
BsiSI CCGG 2 cut(s) 124, 292
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 3 cut(s) 106, 215, 560
Bso31I GGTCTC 1 cut(s) 215
Bsp119I TTCGAA 1 cut(s) 640
Bsp1286I GDGCHC 2 cut(s) 363, 718
Bsp143I GATC 2 cut(s) 212, 583
Bsp19I CCATGG 1 cut(s) 777
BspACI CCGC 5 cut(s) 279, 283, 325, 338, 450
BspCNI CTCAG 2 cut(s) 74, 799
BspFNI CGCG 2 cut(s) 281, 283
BspLI GGNNCC 1 cut(s) 322
BspMI ACCTGC 1 cut(s) 880
BspT104I TTCGAA 1 cut(s) 640
BspT107I GGYRCC 1 cut(s) 320
BspTNI GGTCTC 1 cut(s) 215
BssECI CCNNGG 3 cut(s) 67, 654, 777
BssMI GATC 2 cut(s) 212, 583
BssNAI GTATAC 1 cut(s) 524
BssT1I CCWWGG 2 cut(s) 654, 777
Bst1107I GTATAC 1 cut(s) 524
Bst2UI CCWGG 1 cut(s) 68
Bst6I CTCTTC 2 cut(s) 86, 609
BstBI TTCGAA 1 cut(s) 640
BstC8I GCNNGC 1 cut(s) 329
BstDEI CTNAG 3 cut(s) 61, 602, 807
BstDSI CCRYGG 1 cut(s) 777
BstFNI CGCG 2 cut(s) 281, 283
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 2 cut(s) 215, 586
BstMAI GTCTC 3 cut(s) 106, 215, 560
BstMBI GATC 2 cut(s) 212, 583
BstMWI GCNNNNNNNGC 1 cut(s) 337
BstNI CCWGG 1 cut(s) 68
BstNSI RCATGY 1 cut(s) 573
BstSCI CCNGG 3 cut(s) 66, 123, 291
BstUI CGCG 2 cut(s) 281, 283
BstXI CCANNNNNNTGG 1 cut(s) 555
BstZ17I GTATAC 1 cut(s) 524
BtgI CCRYGG 1 cut(s) 777
BtrI CACGTC 1 cut(s) 514
BtsI GCAGTG 1 cut(s) 910
BtsIMutI CAGTG 3 cut(s) 222, 804, 910
BveI ACCTGC 1 cut(s) 880
Cac8I GCNNGC 1 cut(s) 329
CfoI GCGC 1 cut(s) 283
Cfr13I GGNCC 3 cut(s) 7, 410, 529
Csp6I GTAC 3 cut(s) 289, 321, 951
CspCI CAANNNNNGTGG 2 cut(s) 198, 233
CviAII CATG 6 cut(s) 238, 427, 570, 778, 899, 990
CviQI GTAC 3 cut(s) 289, 321, 951
DdeI CTNAG 3 cut(s) 61, 602, 807
DpnI GATC 2 cut(s) 214, 585
DpnII GATC 2 cut(s) 212, 583
DraI TTTAAA 1 cut(s) 885
Eam1104I CTCTTC 2 cut(s) 86, 609
EarI CTCTTC 2 cut(s) 86, 609
Ecl136II GAGCTC 1 cut(s) 716
Eco130I CCWWGG 2 cut(s) 654, 777
Eco24I GRGCYC 1 cut(s) 718
Eco31I GGTCTC 1 cut(s) 215
Eco47I GGWCC 3 cut(s) 7, 410, 529
Eco53kI GAGCTC 1 cut(s) 716
Eco57I CTGAAG 1 cut(s) 317
EcoICRI GAGCTC 1 cut(s) 716
EcoO109I RGGNCCY 1 cut(s) 529
EcoRII CCWGG 1 cut(s) 66
EcoT14I CCWWGG 2 cut(s) 654, 777
EcoT38I GRGCYC 1 cut(s) 718
ErhI CCWWGG 2 cut(s) 654, 777
FaeI CATG 6 cut(s) 241, 430, 573, 781, 902, 993
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FatI CATG 6 cut(s) 237, 426, 569, 777, 898, 989
FauI CCCGC 1 cut(s) 332
FblI GTMKAC 1 cut(s) 523
Fnu4HI GCNGC 3 cut(s) 279, 284, 338
FriOI GRGCYC 1 cut(s) 718
Fsp4HI GCNGC 3 cut(s) 279, 284, 338
FspBI CTAG 3 cut(s) 50, 191, 792
GlaI GCGC 1 cut(s) 282
GluI GCNGC 3 cut(s) 279, 284, 338
GsuI CTGGAG 2 cut(s) 600, 732
HapII CCGG 2 cut(s) 124, 292
HhaI GCGC 1 cut(s) 283
Hin1II CATG 6 cut(s) 241, 430, 573, 781, 902, 993
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HindIII AAGCTT 2 cut(s) 12, 887
HinfI GANTC 2 cut(s) 307, 617
HpaII CCGG 2 cut(s) 124, 292
HphI GGTGA 2 cut(s) 31, 729
Hpy166II GTNNAC 3 cut(s) 7, 188, 524
Hpy188I TCNGA 2 cut(s) 64, 767
Hpy188III TCNNGA 5 cut(s) 548, 579, 711, 792, 894
Hpy8I GTNNAC 3 cut(s) 7, 188, 524
HpyAV CCTTC 2 cut(s) 789, 844
HpyCH4IV ACGT 3 cut(s) 513, 846, 980
HpyCH4V TGCA 6 cut(s) 120, 176, 209, 751, 932, 989
HpyF10VI GCNNNNNNNGC 1 cut(s) 337
HpyF3I CTNAG 3 cut(s) 61, 602, 807
HpySE526I ACGT 3 cut(s) 513, 846, 980
Hsp92II CATG 6 cut(s) 241, 430, 573, 781, 902, 993
HspAI GCGC 1 cut(s) 281
KpnI GGTACC 1 cut(s) 324
Kzo9I GATC 2 cut(s) 212, 583
LmnI GCTCC 1 cut(s) 713
MaeI CTAG 3 cut(s) 50, 191, 792
MaeII ACGT 3 cut(s) 513, 846, 980
MaeIII GTNAC 4 cut(s) 83, 241, 248, 588
MalI GATC 2 cut(s) 214, 585
MboI GATC 2 cut(s) 212, 583
MboII GAAGA 5 cut(s) 103, 133, 626, 629, 828
MhlI GDGCHC 2 cut(s) 363, 718
MlyI GAGTC 1 cut(s) 626
MnlI CCTC 9 cut(s) 56, 236, 239, 242, 401, 542, 545, 745, 834
MroXI GAANNNNTTC 1 cut(s) 799
MseI TTAA 8 cut(s) 74, 150, 263, 699, 812, 884, 959, 1036
MslI CAYNNNNRTG 1 cut(s) 903
MspI CCGG 2 cut(s) 124, 292
MspR9I CCNGG 3 cut(s) 68, 125, 293
MvaI CCWGG 1 cut(s) 68
MvnI CGCG 2 cut(s) 281, 283
MwoI GCNNNNNNNGC 1 cut(s) 337
NciI CCSGG 2 cut(s) 125, 293
NcoI CCATGG 1 cut(s) 777
NdeII GATC 2 cut(s) 212, 583
NlaIII CATG 6 cut(s) 241, 430, 573, 781, 902, 993
NlaIV GGNNCC 1 cut(s) 322
NmuCI GTSAC 2 cut(s) 83, 588
NspI RCATGY 1 cut(s) 573
NspV TTCGAA 1 cut(s) 640
PciI ACATGT 1 cut(s) 569
PdmI GAANNNNTTC 1 cut(s) 799
PfeI GAWTC 1 cut(s) 307
PkrI GCNGC 3 cut(s) 280, 285, 339
PleI GAGTC 1 cut(s) 625
PpsI GAGTC 1 cut(s) 625
PpuMI RGGWCCY 1 cut(s) 529
PscI ACATGT 1 cut(s) 569
Psp124BI GAGCTC 1 cut(s) 718
Psp5II RGGWCCY 1 cut(s) 529
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 322
PspPI GGNCC 3 cut(s) 7, 410, 529
PspPPI RGGWCCY 1 cut(s) 529
RsaI GTAC 3 cut(s) 290, 322, 952
RsaNI GTAC 3 cut(s) 289, 321, 951
RseI CAYNNNNRTG 1 cut(s) 903
SacI GAGCTC 1 cut(s) 718
SaqAI TTAA 8 cut(s) 74, 150, 263, 699, 812, 884, 959, 1036
SatI GCNGC 3 cut(s) 279, 284, 338
Sau3AI GATC 2 cut(s) 212, 583
Sau96I GGNCC 3 cut(s) 7, 410, 529
SchI GAGTC 1 cut(s) 626
ScrFI CCNGG 3 cut(s) 68, 125, 293
SduI GDGCHC 2 cut(s) 363, 718
SfuI TTCGAA 1 cut(s) 640
SinI GGWCC 3 cut(s) 7, 410, 529
SmiMI CAYNNNNRTG 1 cut(s) 903
SmlI CTYRAG 1 cut(s) 754
SmoI CTYRAG 1 cut(s) 754
SsiI CCGC 5 cut(s) 279, 283, 325, 338, 450
SspMI CTAG 3 cut(s) 50, 191, 792
SstI GAGCTC 1 cut(s) 718
StyD4I CCNGG 3 cut(s) 66, 123, 291
StyI CCWWGG 2 cut(s) 654, 777
TaiI ACGT 3 cut(s) 516, 849, 983
TaqI TCGA 1 cut(s) 640
TatI WGTACW 1 cut(s) 950
TauI GCSGC 3 cut(s) 281, 286, 340
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 8 cut(s) 74, 150, 263, 699, 812, 884, 959, 1036
Tru9I TTAA 8 cut(s) 74, 150, 263, 699, 812, 884, 959, 1036
TscAI CASTG 3 cut(s) 222, 811, 910
TseFI GTSAC 2 cut(s) 83, 588
Tsp45I GTSAC 2 cut(s) 83, 588
TspDTI ATGAA 1 cut(s) 7
TspRI CASTG 3 cut(s) 222, 811, 910
VpaK11BI GGWCC 3 cut(s) 7, 410, 529
XapI RAATTY 5 cut(s) 369, 552, 832, 865, 1010
XbaI TCTAGA 1 cut(s) 791
XceI RCATGY 1 cut(s) 573
XmiI GTMKAC 1 cut(s) 523
XmnI GAANNNNTTC 1 cut(s) 799
XspI CTAG 3 cut(s) 50, 191, 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.