Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013826

Physical Location & Seq

Genomic Coordinates Reverse (-)

24579090 .. 24580481

Gene Structure 1392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G61100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGTCTACGAAAGTGGGAACAAGCCTGGACCAGAAAATCCGACATTTAGTTCAGATTTAAGCCTTTCAGATTCTCTTGTAAAACTGAAGAAGAAGCCTTGTGAAGTATGCGGAAGTGATGCCAATGAGCTTTTGATGATGACTTGCTTCATGTGCAGAGATACTAGGGAGCATACTTATTGCGCGAGGGTGATGTTTCAACGTGTGCCTCGTTTGTGGATTTGTGAAGAGTGCCGTGATTTCTCATCTGTCGCCAACAAAACTGCTAATGCTCAATCATCAAGAACTATTCAAGTGGAACAAGTTGTGGTTAAACAAGTTCGTATTGATCAAACTGTTCCATCACCAAGAACTAATCAAGTTGTGGATAACCACCAAGATCCTCCTATTGATCAAACTGATCCATCATCGACAACTATTCAAGTTGTGGATAATGAAAATTTGATTGAAGCTGCTCCATCATCAAGAAGTAATCAAGTTGTTGATAACAAAGATTGGATTGAAGCTGCTCCATCATTAAGATCTAATCAAGTTGTGCCTGTTGCTCCTCGTATTCATGAGTTTACTACAGACGAATCATCCTCTCCGGTGTCTCCATTGTTCAAGTCCATGTGGGAAAGATTTCCAGTCAAACGACCATCACATTACATTGATCTGTCCTCTGATTCCGAATCTGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

227

Amino Acids

25.58

Weight (kDa)

5.03

Isoelectric Point (pI)

59.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08005 AT5G61100 AT5G61100 AT5G61110
fragaria_vesca	FvH4_5g13941
malus_domestica	MD06G1202100.v1.1
prunus_persica	Prupe.5G204000_v2.0.a1 Prupe.5G204100_v2.0.a1
pyrus_communis	pycom06g17810
rosa_chinensis	RchiOBHm_Chr7g0183011
rosa_laevigata	RLG00000005090
rosa_roxburghii	Rroxscaffold_3G00270880
rosa_rugosa	Rorug06G0451600
rosa_samantha	Rh7AG054900 Rh7BG054400 Rh7DG054500
rosa_wichuraiana	Rw7G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	6
AccII	CGCG	1 cut(s)	185
AciI	CCGC	1 cut(s)	111
AclWI	GGATC	2 cut(s)	374, 395
AcsI	RAATTY	1 cut(s)	439
AcuI	CTGAAG	1 cut(s)	107
AflIII	ACRYGT	1 cut(s)	202
AgsI	TTSAA	6 cut(s)	200, 293, 422, 449, 503, 604
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	3 cut(s)	130, 452, 506
AluI	AGCT	3 cut(s)	130, 452, 506
Alw26I	GTCTC	1 cut(s)	597
AlwI	GGATC	2 cut(s)	374, 395
ApeKI	GCWGC	2 cut(s)	452, 506
ApoI	RAATTY	1 cut(s)	439
Asp700I	GAANNNNTTC	1 cut(s)	621
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	29
AsuHPI	GGTGA	2 cut(s)	202, 336
AvaII	GGWCC	1 cut(s)	29
BbvI	GCAGC	2 cut(s)	439, 493
BccI	CCATC	5 cut(s)	349, 412, 466, 520, 646
BceAI	ACGGC	1 cut(s)	219
BciT130I	CCWGG	1 cut(s)	27
BclI	TGATCA	2 cut(s)	328, 391
BcoDI	GTCTC	1 cut(s)	597
BfaI	CTAG	1 cut(s)	165
BfmI	CTRYAG	1 cut(s)	567
BglII	AGATCT	1 cut(s)	521
BisI	GCNGC	2 cut(s)	453, 507
BlsI	GCNGC	2 cut(s)	454, 508
Bme1390I	CCNGG	1 cut(s)	27
Bme18I	GGWCC	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	29
BmrFI	CCNGG	1 cut(s)	27
BmsI	GCATC	1 cut(s)	109
BsaWI	WCCGGW	1 cut(s)	586
Bse1I	ACTGG	1 cut(s)	626
BseBI	CCWGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	578
BseNI	ACTGG	1 cut(s)	626
BseRI	GAGGAG	1 cut(s)	537
BseXI	GCAGC	2 cut(s)	439, 493
BsgI	GTGCAG	1 cut(s)	175
Bsh1236I	CGCG	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	587
BsmAI	GTCTC	1 cut(s)	597
Bsp143I	GATC	6 cut(s)	328, 379, 391, 400, 521, 652
BspACI	CCGC	1 cut(s)	111
BspFNI	CGCG	1 cut(s)	185
BspHI	TCATGA	1 cut(s)	556
BspPI	GGATC	2 cut(s)	374, 395
BsrI	ACTGG	1 cut(s)	626
BssMI	GATC	6 cut(s)	328, 379, 391, 400, 521, 652
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	337
Bst6I	CTCTTC	2 cut(s)	222, 672
BstF5I	GGATG	1 cut(s)	578
BstFNI	CGCG	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	6 cut(s)	331, 382, 394, 403, 524, 655
BstMAI	GTCTC	1 cut(s)	597
BstMBI	GATC	6 cut(s)	328, 379, 391, 400, 521, 652
BstMWI	GCNNNNNNNGC	1 cut(s)	153
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	25
BstSFI	CTRYAG	1 cut(s)	567
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	2 cut(s)	439, 493
BstX2I	RGATCY	2 cut(s)	379, 521
BstYI	RGATCY	2 cut(s)	379, 521
BtsCI	GGATG	1 cut(s)	578
CciI	TCATGA	1 cut(s)	556
CfoI	GCGC	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	29
CviAII	CATG	3 cut(s)	151, 557, 610
CviJI	RGCY	6 cut(s)	25, 63, 97, 130, 452, 506
CviKI_1	RGCY	6 cut(s)	25, 63, 97, 130, 452, 506
DpnI	GATC	6 cut(s)	330, 381, 393, 402, 523, 654
DpnII	GATC	6 cut(s)	328, 379, 391, 400, 521, 652
Eam1104I	CTCTTC	2 cut(s)	222, 672
EarI	CTCTTC	2 cut(s)	222, 672
Eco47I	GGWCC	1 cut(s)	29
Eco57I	CTGAAG	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	25
FaeI	CATG	3 cut(s)	154, 560, 613
FaiI	YATR	5 cut(s)	109, 152, 174, 558, 611
FatI	CATG	3 cut(s)	150, 556, 609
FbaI	TGATCA	2 cut(s)	328, 391
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	2 cut(s)	453, 507
FokI	GGATG	1 cut(s)	565
Fsp4HI	GCNGC	2 cut(s)	453, 507
FspBI	CTAG	1 cut(s)	165
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	2 cut(s)	453, 507
HapII	CCGG	1 cut(s)	587
HhaI	GCGC	1 cut(s)	185
Hin1II	CATG	3 cut(s)	154, 560, 613
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HinfI	GANTC	4 cut(s)	71, 575, 665, 671
HpaII	CCGG	1 cut(s)	587
HphI	GGTGA	2 cut(s)	202, 336
Hpy166II	GTNNAC	2 cut(s)	7, 564
Hpy188I	TCNGA	6 cut(s)	42, 55, 70, 664, 670, 676
Hpy188III	TCNNGA	3 cut(s)	282, 465, 557
Hpy8I	GTNNAC	2 cut(s)	7, 564
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	1 cut(s)	202
HpyCH4V	TGCA	1 cut(s)	156
HpyF10VI	GCNNNNNNNGC	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	202
Hsp92II	CATG	3 cut(s)	154, 560, 613
HspAI	GCGC	1 cut(s)	183
Ksp22I	TGATCA	2 cut(s)	328, 391
Kzo9I	GATC	6 cut(s)	328, 379, 391, 400, 521, 652
LmnI	GCTCC	4 cut(s)	169, 460, 514, 550
LpnPI	CCDG	6 cut(s)	12, 39, 45, 552, 600, 639
Lsp1109I	GCAGC	2 cut(s)	439, 493
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	165
MaeII	ACGT	1 cut(s)	202
MalI	GATC	6 cut(s)	330, 381, 393, 402, 523, 654
MboI	GATC	6 cut(s)	328, 379, 391, 400, 521, 652
MboII	GAAGA	3 cut(s)	100, 103, 239
MflI	RGATCY	2 cut(s)	379, 521
MluCI	AATT	1 cut(s)	439
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	6 cut(s)	180, 219, 393, 558, 592, 670
MroXI	GAANNNNTTC	1 cut(s)	621
MseI	TTAA	3 cut(s)	59, 312, 518
MspI	CCGG	1 cut(s)	587
MspR9I	CCNGG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	27
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	153
NdeII	GATC	6 cut(s)	328, 379, 391, 400, 521, 652
NlaIII	CATG	3 cut(s)	154, 560, 613
PagI	TCATGA	1 cut(s)	556
PcsI	WCGNNNNNNNCGW	1 cut(s)	208
PdmI	GAANNNNTTC	1 cut(s)	621
PfeI	GAWTC	4 cut(s)	71, 575, 665, 671
PkrI	GCNGC	2 cut(s)	454, 508
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PspPI	GGNCC	1 cut(s)	29
PsuI	RGATCY	2 cut(s)	379, 521
SaqAI	TTAA	3 cut(s)	59, 312, 518
SatI	GCNGC	2 cut(s)	453, 507
Sau3AI	GATC	6 cut(s)	328, 379, 391, 400, 521, 652
Sau96I	GGNCC	1 cut(s)	29
ScrFI	CCNGG	1 cut(s)	27
SetI	ASST	4 cut(s)	132, 205, 454, 508
SfaNI	GCATC	1 cut(s)	109
SfcI	CTRYAG	1 cut(s)	567
SinI	GGWCC	1 cut(s)	29
Sse9I	AATT	1 cut(s)	439
SsiI	CCGC	1 cut(s)	111
SspMI	CTAG	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	25
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	1 cut(s)	205
TaqI	TCGA	1 cut(s)	410
TasI	AATT	1 cut(s)	439
TfiI	GAWTC	4 cut(s)	71, 575, 665, 671
Tru1I	TTAA	3 cut(s)	59, 312, 518
Tru9I	TTAA	3 cut(s)	59, 312, 518
TseI	GCWGC	2 cut(s)	452, 506
TspDTI	ATGAA	3 cut(s)	139, 450, 545
VpaK11BI	GGWCC	1 cut(s)	29
XapI	RAATTY	1 cut(s)	439
XmiI	GTMKAC	1 cut(s)	6
XmnI	GAANNNNTTC	1 cut(s)	621
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.