Rw7G004480

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0013826
Physical Location & Seq
Forward (+)
3781819 .. 3783794
1976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G004480.1

Sequence Viewer

Length: 1026 bp
ATGTCGCGATCTGTGGGTTCCAGAAGGCTATTTGAAGAGCCTGGCAGTTCAGGTCATCTAACAAGGAGAATCTCAATGCGAACCAGAGGAGAGTTTTTTTCTTTTGACAAATATGTTAAAATGTCATATAGATCTCAGAAAGTGGATTTTCCGTCACCATGTAAATGGCATGCAGGCCCTGTCCAAATAGATACCATGGTAACAATGTCTAGAAGGCATTCCAACGAGTTTAAACATGGCCGTAAAGATTTATCTTTACAAAAGGTGAAGGTTACTTACAAAAGTGAACCTACTGGACATGGCACTGAAGAAATCAATTCAATCATTGAGAAACAAGAGTCTAAATCATCTGCTGAACTAAAATATAAAGCTACTTCTATCAAGTATAAGAATCAAAACAACTGCAAGAAAGAGTCACAGGATGCTCCGCTCATCAACTTTCCAGGAGATGACTCTATTACCTCTGAACTGCTAAACATCAAACCCAAAACAGAGATAAATCTGCCAATTCGCGCAGTTTTAGATGCTACTTGGTGTGGAAGCCTTGAGATCCTTGATAAGGATTCAGGTTGTCAATTTTATGATGGATTTGTGGCTCATCTTCCTGGAAAAGTTTGTCGTAAAGCTCTAGAGCATACACAACTGATGCCTAATGTGCTGCCTTGTACTATGCTCTCTTGTTGCAATGTATGGGAGGAAATATTTCAGAACGAAATCCCCACCATTGAGGATATTGCAGTATTCTTTTTCCCTGGCAATTTTGAGAGGTCCAAAGAGCAGTACTTTAGCCTTGTACAAGTTATGGAGACACAAGATCTGATACTGAGGAGTCTTATAAAGGGCGTCAATCTATTGATTTTCTCTTCTAAGAGGCTGCATCTGGATCCTTGTGGATTGAAAATGAAATCTTTCCTGTGGGGAATATATTGCCCTCTCCAGCTTACCAATGACTCCCAAGCACACTCAATGAAGGCTAATCGCCTCTCCCTGATGCAGGGGATGCTGCTCTACCACAACATGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

341

Amino Acids

39.01

Weight (kDa)

8.89

Isoelectric Point (pI)

57.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC_AIPP2 PF23121 178 - 309 3.2e-41 AIPP2, SPOC-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013826)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08005 AT5G61100 AT5G61100 AT5G61110
fragaria_vesca FvH4_5g13941
malus_domestica MD06G1202100.v1.1
prunus_persica Prupe.5G204000_v2.0.a1 Prupe.5G204100_v2.0.a1
pyrus_communis pycom06g17810
rosa_chinensis RchiOBHm_Chr7g0183011
rosa_laevigata RLG00000005090
rosa_roxburghii Rroxscaffold_3G00270880
rosa_rugosa Rorug06G0451600
rosa_samantha Rh7AG054900 Rh7BG054400 Rh7DG054500
rosa_wichuraiana Rw7G004480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 836
AccBSI CCGCTC 1 cut(s) 430
AccII CGCG 2 cut(s) 7, 513
AciI CCGC 1 cut(s) 428
AclWI GGATC 3 cut(s) 544, 878, 891
AcoI YGGCCR 1 cut(s) 238
AcuI CTGAAG 1 cut(s) 327
AcyI GRCGYC 1 cut(s) 843
AfaI GTAC 3 cut(s) 667, 782, 795
AfiI CCNNNNNNNGG 2 cut(s) 559, 994
AgsI TTSAA 3 cut(s) 35, 321, 898
AjnI CCWGG 4 cut(s) 40, 442, 604, 751
AluBI AGCT 3 cut(s) 371, 626, 940
AluI AGCT 3 cut(s) 371, 626, 940
Alw26I GTCTC 1 cut(s) 800
AlwI GGATC 3 cut(s) 544, 878, 891
AlwNI CAGNNNCTG 1 cut(s) 179
AoxI GGCC 2 cut(s) 175, 238
ApeKI GCWGC 3 cut(s) 658, 874, 1003
Asp700I GAANNNNTTC 3 cut(s) 217, 702, 908
AspLEI GCGC 1 cut(s) 515
AspS9I GGNCC 2 cut(s) 176, 768
AsuHPI GGTGA 2 cut(s) 147, 277
AvaII GGWCC 1 cut(s) 768
BaeI ACNNNNGTAYC 2 cut(s) 183, 216
BamHI GGATCC 1 cut(s) 883
BarI GAAGNNNNNNTAC 2 cut(s) 260, 292
BbvI GCAGC 3 cut(s) 645, 861, 990
BccI CCATC 1 cut(s) 578
BceAI ACGGC 1 cut(s) 225
BciT130I CCWGG 4 cut(s) 42, 444, 606, 753
BcoDI GTCTC 1 cut(s) 800
BfaI CTAG 2 cut(s) 210, 629
BglII AGATCT 2 cut(s) 131, 814
BisI GCNGC 3 cut(s) 659, 875, 1004
BlsI GCNGC 3 cut(s) 660, 876, 1005
BmcAI AGTACT 1 cut(s) 782
Bme1390I CCNGG 4 cut(s) 42, 444, 606, 753
Bme18I GGWCC 1 cut(s) 768
BmgT120I GGNCC 2 cut(s) 176, 768
BmiI GGNNCC 2 cut(s) 19, 885
BmrFI CCNGG 4 cut(s) 42, 444, 606, 753
BmsI GCATC 6 cut(s) 412, 514, 636, 886, 981, 990
BpmI CTGGAG 1 cut(s) 920
BpuEI CTTGAG 1 cut(s) 566
BsaHI GRCGYC 1 cut(s) 843
BsaJI CCNNGG 2 cut(s) 195, 751
Bsc4I CCNNNNNNNGG 2 cut(s) 559, 994
Bse1I ACTGG 1 cut(s) 298
Bse3DI GCAATG 1 cut(s) 691
BseBI CCWGG 4 cut(s) 42, 444, 606, 753
BseDI CCNNGG 2 cut(s) 195, 751
BseGI GGATG 2 cut(s) 427, 1005
BseLI CCNNNNNNNGG 2 cut(s) 559, 994
BseMI GCAATG 1 cut(s) 691
BseMII CTCAG 2 cut(s) 149, 815
BseNI ACTGG 1 cut(s) 298
BseRI GAGGAG 2 cut(s) 102, 841
BseXI GCAGC 3 cut(s) 645, 861, 990
Bsh1236I CGCG 2 cut(s) 7, 513
BshFI GGCC 2 cut(s) 177, 240
BslI CCNNNNNNNGG 2 cut(s) 559, 994
BsmAI GTCTC 1 cut(s) 800
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 2 cut(s) 177, 240
Bsp1407I TGTACA 1 cut(s) 793
Bsp143I GATC 5 cut(s) 8, 131, 549, 814, 883
Bsp19I CCATGG 1 cut(s) 195
Bsp68I TCGCGA 1 cut(s) 7
BspACI CCGC 1 cut(s) 428
BspANI GGCC 2 cut(s) 177, 240
BspCNI CTCAG 2 cut(s) 148, 816
BspFNI CGCG 2 cut(s) 7, 513
BspLI GGNNCC 2 cut(s) 19, 885
BspPI GGATC 3 cut(s) 544, 878, 891
BspQI GCTCTTC 1 cut(s) 30
BsrBI CCGCTC 1 cut(s) 430
BsrDI GCAATG 1 cut(s) 691
BsrGI TGTACA 1 cut(s) 793
BsrI ACTGG 1 cut(s) 298
BssECI CCNNGG 2 cut(s) 195, 751
BssMI GATC 5 cut(s) 8, 131, 549, 814, 883
BssNI GRCGYC 1 cut(s) 843
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 4 cut(s) 42, 444, 606, 753
Bst6I CTCTTC 2 cut(s) 30, 868
BstACI GRCGYC 1 cut(s) 843
BstAPI GCANNNNNTGC 1 cut(s) 1000
BstAUI TGTACA 1 cut(s) 793
BstC8I GCNNGC 2 cut(s) 171, 175
BstDEI CTNAG 3 cut(s) 135, 824, 867
BstDSI CCRYGG 1 cut(s) 195
BstENI CCTNNNNNAGG 2 cut(s) 557, 992
BstF5I GGATG 2 cut(s) 427, 1005
BstFNI CGCG 2 cut(s) 7, 513
BstHHI GCGC 1 cut(s) 515
BstKTI GATC 5 cut(s) 11, 134, 552, 817, 886
BstMAI GTCTC 1 cut(s) 800
BstMBI GATC 5 cut(s) 8, 131, 549, 814, 883
BstMWI GCNNNNNNNGC 2 cut(s) 655, 1000
BstNI CCWGG 4 cut(s) 42, 444, 606, 753
BstNSI RCATGY 1 cut(s) 173
BstSCI CCNGG 4 cut(s) 40, 442, 604, 751
BstUI CGCG 2 cut(s) 7, 513
BstV1I GCAGC 3 cut(s) 645, 861, 990
BstX2I RGATCY 4 cut(s) 131, 549, 814, 883
BstXI CCANNNNNNTGG 1 cut(s) 165
BstYI RGATCY 4 cut(s) 131, 549, 814, 883
BsuRI GGCC 2 cut(s) 177, 240
BtgI CCRYGG 1 cut(s) 195
BtsCI GGATG 2 cut(s) 427, 1005
BtsIMutI CAGTG 1 cut(s) 303
BtuMI TCGCGA 1 cut(s) 7
Cac8I GCNNGC 2 cut(s) 171, 175
CaiI CAGNNNCTG 1 cut(s) 179
CfoI GCGC 1 cut(s) 515
Cfr13I GGNCC 2 cut(s) 176, 768
CseI GACGC 1 cut(s) 832
Csp6I GTAC 3 cut(s) 666, 781, 794
CviAII CATG 6 cut(s) 159, 170, 196, 236, 299, 1018
CviQI GTAC 3 cut(s) 666, 781, 794
DdeI CTNAG 3 cut(s) 135, 824, 867
DpnI GATC 5 cut(s) 10, 133, 551, 816, 885
DpnII GATC 5 cut(s) 8, 131, 549, 814, 883
DraI TTTAAA 1 cut(s) 232
EaeI YGGCCR 1 cut(s) 238
Eam1104I CTCTTC 2 cut(s) 30, 868
EarI CTCTTC 2 cut(s) 30, 868
Eco130I CCWWGG 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 768
Eco57I CTGAAG 1 cut(s) 327
EcoNI CCTNNNNNAGG 2 cut(s) 557, 992
EcoO109I RGGNCCY 1 cut(s) 176
EcoRII CCWGG 4 cut(s) 40, 442, 604, 751
EcoT14I CCWWGG 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 6 cut(s) 162, 173, 199, 239, 302, 1021
FatI CATG 6 cut(s) 158, 169, 195, 235, 298, 1017
Fnu4HI GCNGC 3 cut(s) 659, 875, 1004
FokI GGATG 2 cut(s) 434, 1012
Fsp4HI GCNGC 3 cut(s) 659, 875, 1004
FspBI CTAG 2 cut(s) 210, 629
GlaI GCGC 1 cut(s) 514
GluI GCNGC 3 cut(s) 659, 875, 1004
GsuI CTGGAG 1 cut(s) 920
HaeIII GGCC 2 cut(s) 177, 240
HgaI GACGC 1 cut(s) 832
HhaI GCGC 1 cut(s) 515
Hin1I GRCGYC 1 cut(s) 843
Hin1II CATG 6 cut(s) 162, 173, 199, 239, 302, 1021
Hin6I GCGC 1 cut(s) 513
HinP1I GCGC 1 cut(s) 513
HinfI GANTC 8 cut(s) 69, 338, 391, 413, 452, 563, 829, 950
HphI GGTGA 2 cut(s) 147, 277
Hpy166II GTNNAC 1 cut(s) 287
Hpy188I TCNGA 4 cut(s) 138, 466, 708, 819
Hpy188III TCNNGA 5 cut(s) 6, 21, 210, 629, 881
Hpy8I GTNNAC 1 cut(s) 287
HpyAV CCTTC 4 cut(s) 18, 207, 262, 964
HpyCH4V TGCA 6 cut(s) 173, 405, 684, 737, 877, 994
HpyF10VI GCNNNNNNNGC 2 cut(s) 655, 1000
HpyF3I CTNAG 3 cut(s) 135, 824, 867
Hsp92I GRCGYC 1 cut(s) 843
Hsp92II CATG 6 cut(s) 162, 173, 199, 239, 302, 1021
HspAI GCGC 1 cut(s) 513
Kzo9I GATC 5 cut(s) 8, 131, 549, 814, 883
LguI GCTCTTC 1 cut(s) 30
LmnI GCTCC 1 cut(s) 430
Lsp1109I GCAGC 3 cut(s) 645, 861, 990
LweI GCATC 6 cut(s) 412, 514, 636, 886, 981, 990
MaeI CTAG 2 cut(s) 210, 629
MaeIII GTNAC 4 cut(s) 153, 199, 271, 414
MalI GATC 5 cut(s) 10, 133, 551, 816, 885
MbiI CCGCTC 1 cut(s) 430
MboI GATC 5 cut(s) 8, 131, 549, 814, 883
MboII GAAGA 4 cut(s) 47, 320, 593, 855
MflI RGATCY 4 cut(s) 131, 549, 814, 883
MluCI AATT 4 cut(s) 316, 507, 575, 757
MlyI GAGTC 5 cut(s) 347, 422, 446, 838, 944
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 9 cut(s) 80, 472, 688, 721, 759, 819, 864, 942, 992
MroXI GAANNNNTTC 3 cut(s) 217, 702, 908
MseI TTAA 2 cut(s) 117, 231
MslI CAYNNNNRTG 1 cut(s) 163
MspR9I CCNGG 4 cut(s) 42, 444, 606, 753
MssI GTTTAAAC 1 cut(s) 232
Mva1269I GAATGC 1 cut(s) 217
MvaI CCWGG 4 cut(s) 42, 444, 606, 753
MvnI CGCG 2 cut(s) 7, 513
MwoI GCNNNNNNNGC 2 cut(s) 655, 1000
NcoI CCATGG 1 cut(s) 195
NdeII GATC 5 cut(s) 8, 131, 549, 814, 883
NlaIII CATG 6 cut(s) 162, 173, 199, 239, 302, 1021
NlaIV GGNNCC 2 cut(s) 19, 885
NmuCI GTSAC 2 cut(s) 153, 414
NruI TCGCGA 1 cut(s) 7
NspI RCATGY 1 cut(s) 173
PaeI GCATGC 1 cut(s) 173
PciSI GCTCTTC 1 cut(s) 30
PctI GAATGC 1 cut(s) 217
PdmI GAANNNNTTC 3 cut(s) 217, 702, 908
PfeI GAWTC 3 cut(s) 69, 391, 563
PfoI TCCNGGA 2 cut(s) 442, 604
PkrI GCNGC 3 cut(s) 660, 876, 1005
PleI GAGTC 5 cut(s) 346, 421, 446, 837, 944
PmeI GTTTAAAC 1 cut(s) 232
PpsI GAGTC 5 cut(s) 346, 421, 446, 837, 944
PsiI TTATAA 1 cut(s) 836
Psp6I CCWGG 4 cut(s) 40, 442, 604, 751
PspGI CCWGG 4 cut(s) 40, 442, 604, 751
PspN4I GGNNCC 2 cut(s) 19, 885
PspPI GGNCC 2 cut(s) 176, 768
PstNI CAGNNNCTG 1 cut(s) 179
PsuI RGATCY 4 cut(s) 131, 549, 814, 883
RruI TCGCGA 1 cut(s) 7
RsaI GTAC 3 cut(s) 667, 782, 795
RsaNI GTAC 3 cut(s) 666, 781, 794
RseI CAYNNNNRTG 1 cut(s) 163
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 2 cut(s) 117, 231
SatI GCNGC 3 cut(s) 659, 875, 1004
Sau3AI GATC 5 cut(s) 8, 131, 549, 814, 883
Sau96I GGNCC 2 cut(s) 176, 768
ScaI AGTACT 1 cut(s) 782
SchI GAGTC 5 cut(s) 347, 422, 446, 838, 944
ScrFI CCNGG 4 cut(s) 42, 444, 606, 753
SfaNI GCATC 6 cut(s) 412, 514, 636, 886, 981, 990
SinI GGWCC 1 cut(s) 768
SmiMI CAYNNNNRTG 1 cut(s) 163
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
SphI GCATGC 1 cut(s) 173
Sse9I AATT 4 cut(s) 316, 507, 575, 757
SsiI CCGC 1 cut(s) 428
SspI AATATT 1 cut(s) 702
SspMI CTAG 2 cut(s) 210, 629
StyD4I CCNGG 4 cut(s) 40, 442, 604, 751
StyI CCWWGG 1 cut(s) 195
TasI AATT 4 cut(s) 316, 507, 575, 757
TatI WGTACW 3 cut(s) 665, 780, 793
TfiI GAWTC 3 cut(s) 69, 391, 563
Tru1I TTAA 2 cut(s) 117, 231
Tru9I TTAA 2 cut(s) 117, 231
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 2 cut(s) 153, 414
TseI GCWGC 3 cut(s) 658, 874, 1003
Tsp45I GTSAC 2 cut(s) 153, 414
TspDTI ATGAA 2 cut(s) 917, 983
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 1 cut(s) 310
VpaK11BI GGWCC 1 cut(s) 768
XagI CCTNNNNNAGG 2 cut(s) 557, 992
XbaI TCTAGA 2 cut(s) 209, 628
XceI RCATGY 1 cut(s) 173
XmnI GAANNNNTTC 3 cut(s) 217, 702, 908
XspI CTAG 2 cut(s) 210, 629
ZrmI AGTACT 1 cut(s) 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.