FvH4_5g13941

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013826
Physical Location & Seq
Reverse (-)
7884898 .. 7886680
1783 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13941.t1

Sequence Viewer

Length: 1008 bp
ATGTCGCGATCTGTGGGTTCCAGAAGGCTATTTGAAGAGTCTGGCAGTTCAGGTCATCTTACAAAGCGAATCTCAACAAGAACCAGAGGAAAGTTTGACAAATATGTCAAAATTAGATCTCAGAAAGTGGATATTCCATCACCAAGTAAATGGGACGCAGGCCCTGTCCAAACTGATACCATGGTAACAATGTCTAGATGGCCTTCCAACGAGTTTAAACATACCCGTAAAGATTTATCTTTCCAAAAGGGGAAGGTTACTTGCAAAAGTGAACTTACTGGACATGGCACTGAAGAAATCAATTCAGTCACTGAGAAGCAAGAGTCTAAACCATTTGCTGAACTAAAATATATCGATACTTCTATGGAGTATAAGAATCCAAATCTATGCAAGAAAGAGTTGCAGGATGCTCCACTCATCAACTTTTCAGGAGATAGCTCTATTGTCTCTGACCTTCTAAACATCAAACCCAAAACAGAGATAAATCTACCATTTTGCCTGGTTTTAGATGCTACATGGTGCGGAAGCCTTGAGATCCTTCATAAGGATTCAGGCATACAATTTTATGATGGATTTGTAGCTTATCTTCCTGGAAAAGTTTGTCGTAAAGCTCTAGAGCATACAAATCTGATGCCTAATGTGCTGCCGTGTACTATGCTCTCTTGTTGCAATGTATGGGAAGAAATCTTTTCGAAGAAAAGCCCCACCATAGAGGATATTGCACTATTCTTTTTCCCGGGAAATTTTGAGAGGTCCAAAGAGCAGTACTGCAGCCTTGTGCAAGTTATGGAGACGCAAGATCTTATACTGAGGAGTCTAATAAAAGGCATCAGTCTATTTATTTTCTCTTCTAAGAGGCTTCATCTGAATCCTTGTGGATTGAAAATGAAGTCTTTCCTGTGGGGACTGTATTGCCCTCTCCAGCTTACCAATGACTCCCAAGCCCACTCAATGAAGGTTAAACTGCCTCTGTTGGCTGCAGGGGATGCTGCTCTGCTCACAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

336

Amino Acids

37.81

Weight (kDa)

8.85

Isoelectric Point (pI)

51.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC_AIPP2 PF23121 173 - 304 2.4e-39 AIPP2, SPOC-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013826)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08005 AT5G61100 AT5G61100 AT5G61110
fragaria_vesca FvH4_5g13941
malus_domestica MD06G1202100.v1.1
prunus_persica Prupe.5G204000_v2.0.a1 Prupe.5G204100_v2.0.a1
pyrus_communis pycom06g17810
rosa_chinensis RchiOBHm_Chr7g0183011
rosa_laevigata RLG00000005090
rosa_roxburghii Rroxscaffold_3G00270880
rosa_rugosa Rorug06G0451600
rosa_samantha Rh7AG054900 Rh7BG054400 Rh7DG054500
rosa_wichuraiana Rw7G004480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 104
AccII CGCG 1 cut(s) 7
AciI CCGC 1 cut(s) 522
AclWI GGATC 1 cut(s) 529
AcsI RAATTY 1 cut(s) 742
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 2 cut(s) 652, 767
AfiI CCNNNNNNNGG 1 cut(s) 544
AgsI TTSAA 2 cut(s) 35, 883
AjnI CCWGG 2 cut(s) 498, 589
AluBI AGCT 4 cut(s) 438, 581, 611, 925
AluI AGCT 4 cut(s) 438, 581, 611, 925
Alw26I GTCTC 2 cut(s) 451, 785
AlwI GGATC 1 cut(s) 529
AlwNI CAGNNNCTG 2 cut(s) 164, 311
Ama87I CYCGRG 1 cut(s) 736
AoxI GGCC 2 cut(s) 160, 200
ApeKI GCWGC 4 cut(s) 643, 771, 977, 989
ApoI RAATTY 1 cut(s) 742
Asp700I GAANNNNTTC 1 cut(s) 893
AspS9I GGNCC 2 cut(s) 161, 753
AsuC2I CCSGG 2 cut(s) 737, 738
AsuHPI GGTGA 1 cut(s) 132
AsuII TTCGAA 1 cut(s) 692
AvaI CYCGRG 1 cut(s) 736
AvaII GGWCC 1 cut(s) 753
BaeI ACNNNNGTAYC 2 cut(s) 168, 201
BarI GAAGNNNNNNTAC 2 cut(s) 570, 602
BbvI GCAGC 4 cut(s) 630, 783, 964, 976
BccI CCATC 3 cut(s) 145, 192, 563
BceAI ACGGC 1 cut(s) 631
BciT130I CCWGG 2 cut(s) 500, 591
BcnI CCSGG 2 cut(s) 737, 738
BcoDI GTCTC 2 cut(s) 451, 785
BfaI CTAG 2 cut(s) 195, 614
BfmI CTRYAG 2 cut(s) 769, 978
BglII AGATCT 2 cut(s) 116, 799
BisI GCNGC 4 cut(s) 644, 772, 978, 990
BlsI GCNGC 4 cut(s) 645, 773, 979, 991
BmcAI AGTACT 1 cut(s) 767
Bme1390I CCNGG 4 cut(s) 500, 591, 737, 738
Bme18I GGWCC 1 cut(s) 753
BmeT110I CYCGRG 1 cut(s) 736
BmgT120I GGNCC 2 cut(s) 161, 753
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 4 cut(s) 500, 591, 737, 738
BmsI GCATC 5 cut(s) 397, 499, 621, 837, 976
BpmI CTGGAG 1 cut(s) 905
Bpu14I TTCGAA 1 cut(s) 692
BpuEI CTTGAG 1 cut(s) 551
BpuMI CCSGG 2 cut(s) 737, 738
Bsa29I ATCGAT 1 cut(s) 354
BsaJI CCNNGG 2 cut(s) 180, 736
Bsc4I CCNNNNNNNGG 1 cut(s) 544
Bse1I ACTGG 1 cut(s) 283
Bse3DI GCAATG 1 cut(s) 676
BseBI CCWGG 2 cut(s) 500, 591
BseCI ATCGAT 1 cut(s) 354
BseDI CCNNGG 2 cut(s) 180, 736
BseGI GGATG 2 cut(s) 412, 991
BseLI CCNNNNNNNGG 1 cut(s) 544
BseMI GCAATG 1 cut(s) 676
BseMII CTCAG 3 cut(s) 134, 303, 800
BseNI ACTGG 1 cut(s) 283
BseRI GAGGAG 1 cut(s) 826
BseXI GCAGC 4 cut(s) 630, 783, 964, 976
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 2 cut(s) 162, 202
BshVI ATCGAT 1 cut(s) 354
BsiHKCI CYCGRG 1 cut(s) 736
BsiSI CCGG 1 cut(s) 737
BslFI GGGAC 2 cut(s) 167, 918
BslI CCNNNNNNNGG 1 cut(s) 544
BsmAI GTCTC 2 cut(s) 451, 785
BsmBI CGTCTC 1 cut(s) 785
BsmFI GGGAC 2 cut(s) 167, 918
BsnI GGCC 2 cut(s) 162, 202
BsoBI CYCGRG 1 cut(s) 736
Bsp119I TTCGAA 1 cut(s) 692
Bsp143I GATC 4 cut(s) 8, 116, 534, 799
Bsp19I CCATGG 1 cut(s) 180
Bsp68I TCGCGA 1 cut(s) 7
BspACI CCGC 1 cut(s) 522
BspANI GGCC 2 cut(s) 162, 202
BspCNI CTCAG 3 cut(s) 133, 304, 801
BspDI ATCGAT 1 cut(s) 354
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 19
BspMAI CTGCAG 2 cut(s) 773, 982
BspPI GGATC 1 cut(s) 529
BspT104I TTCGAA 1 cut(s) 692
BsrDI GCAATG 1 cut(s) 676
BsrI ACTGG 1 cut(s) 283
BssECI CCNNGG 2 cut(s) 180, 736
BssMI GATC 4 cut(s) 8, 116, 534, 799
BssT1I CCWWGG 1 cut(s) 180
Bst2UI CCWGG 2 cut(s) 500, 591
Bst4CI ACNGT 1 cut(s) 909
Bst6I CTCTTC 2 cut(s) 30, 853
BstAPI GCANNNNNTGC 1 cut(s) 986
BstBI TTCGAA 1 cut(s) 692
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 4 cut(s) 120, 312, 809, 852
BstDSI CCRYGG 1 cut(s) 180
BstENI CCTNNNNNAGG 1 cut(s) 542
BstF5I GGATG 2 cut(s) 412, 991
BstFNI CGCG 1 cut(s) 7
BstKTI GATC 4 cut(s) 11, 119, 537, 802
BstMAI GTCTC 2 cut(s) 451, 785
BstMBI GATC 4 cut(s) 8, 116, 534, 799
BstMWI GCNNNNNNNGC 2 cut(s) 640, 986
BstNI CCWGG 2 cut(s) 500, 591
BstSCI CCNGG 4 cut(s) 498, 589, 735, 736
BstSFI CTRYAG 2 cut(s) 769, 978
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 4 cut(s) 630, 783, 964, 976
BstX2I RGATCY 3 cut(s) 116, 534, 799
BstXI CCANNNNNNTGG 1 cut(s) 150
BstYI RGATCY 3 cut(s) 116, 534, 799
Bsu15I ATCGAT 1 cut(s) 354
BsuRI GGCC 2 cut(s) 162, 202
BsuTUI ATCGAT 1 cut(s) 354
BtgI CCRYGG 1 cut(s) 180
BtsCI GGATG 2 cut(s) 412, 991
BtsIMutI CAGTG 2 cut(s) 288, 309
BtuMI TCGCGA 1 cut(s) 7
Cac8I GCNNGC 1 cut(s) 160
CaiI CAGNNNCTG 2 cut(s) 164, 311
Cfr13I GGNCC 2 cut(s) 161, 753
Cfr9I CCCGGG 1 cut(s) 736
ClaI ATCGAT 1 cut(s) 354
CseI GACGC 2 cut(s) 164, 802
Csp6I GTAC 2 cut(s) 651, 766
CviAII CATG 4 cut(s) 181, 284, 516, 1005
CviQI GTAC 2 cut(s) 651, 766
DdeI CTNAG 4 cut(s) 120, 312, 809, 852
DpnI GATC 4 cut(s) 10, 118, 536, 801
DpnII GATC 4 cut(s) 8, 116, 534, 799
DraI TTTAAA 1 cut(s) 217
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
Eam1104I CTCTTC 2 cut(s) 30, 853
EarI CTCTTC 2 cut(s) 30, 853
Eco130I CCWWGG 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 753
Eco57I CTGAAG 1 cut(s) 312
Eco88I CYCGRG 1 cut(s) 736
EcoNI CCTNNNNNAGG 1 cut(s) 542
EcoO109I RGGNCCY 1 cut(s) 161
EcoRII CCWGG 2 cut(s) 498, 589
EcoT14I CCWWGG 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 180
Esp3I CGTCTC 1 cut(s) 785
FaeI CATG 4 cut(s) 184, 287, 519, 1008
FaqI GGGAC 2 cut(s) 167, 918
FatI CATG 4 cut(s) 180, 283, 515, 1004
Fnu4HI GCNGC 4 cut(s) 644, 772, 978, 990
FokI GGATG 2 cut(s) 419, 998
Fsp4HI GCNGC 4 cut(s) 644, 772, 978, 990
FspBI CTAG 2 cut(s) 195, 614
GluI GCNGC 4 cut(s) 644, 772, 978, 990
GsuI CTGGAG 1 cut(s) 905
HaeIII GGCC 2 cut(s) 162, 202
HapII CCGG 1 cut(s) 737
HgaI GACGC 2 cut(s) 164, 802
Hin1II CATG 4 cut(s) 184, 287, 519, 1008
HinfI GANTC 8 cut(s) 38, 69, 323, 376, 548, 814, 868, 935
HpaII CCGG 1 cut(s) 737
HphI GGTGA 1 cut(s) 132
Hpy166II GTNNAC 2 cut(s) 272, 651
Hpy188I TCNGA 4 cut(s) 123, 451, 630, 867
Hpy188III TCNNGA 5 cut(s) 6, 21, 195, 429, 614
Hpy8I GTNNAC 2 cut(s) 272, 651
HpyAV CCTTC 6 cut(s) 18, 213, 247, 464, 548, 949
HpyCH4III ACNGT 1 cut(s) 909
HpyCH4V TGCA 8 cut(s) 264, 390, 403, 669, 722, 771, 781, 980
HpyF10VI GCNNNNNNNGC 2 cut(s) 640, 986
HpyF3I CTNAG 4 cut(s) 120, 312, 809, 852
Hsp92II CATG 4 cut(s) 184, 287, 519, 1008
Kzo9I GATC 4 cut(s) 8, 116, 534, 799
LmnI GCTCC 1 cut(s) 415
Lsp1109I GCAGC 4 cut(s) 630, 783, 964, 976
LweI GCATC 5 cut(s) 397, 499, 621, 837, 976
MaeI CTAG 2 cut(s) 195, 614
MaeIII GTNAC 3 cut(s) 184, 256, 307
MalI GATC 4 cut(s) 10, 118, 536, 801
MboI GATC 4 cut(s) 8, 116, 534, 799
MboII GAAGA 6 cut(s) 47, 305, 578, 692, 706, 840
MflI RGATCY 3 cut(s) 116, 534, 799
MluCI AATT 4 cut(s) 111, 301, 560, 742
MlyI GAGTC 4 cut(s) 47, 332, 823, 929
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 7 cut(s) 80, 706, 744, 804, 849, 927, 978
MroXI GAANNNNTTC 1 cut(s) 893
MseI TTAA 2 cut(s) 216, 960
MspI CCGG 1 cut(s) 737
MspR9I CCNGG 4 cut(s) 500, 591, 737, 738
MssI GTTTAAAC 1 cut(s) 217
MvaI CCWGG 2 cut(s) 500, 591
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 2 cut(s) 640, 986
NciI CCSGG 2 cut(s) 737, 738
NcoI CCATGG 1 cut(s) 180
NdeII GATC 4 cut(s) 8, 116, 534, 799
NlaIII CATG 4 cut(s) 184, 287, 519, 1008
NlaIV GGNNCC 1 cut(s) 19
NmuCI GTSAC 1 cut(s) 307
NruI TCGCGA 1 cut(s) 7
NspV TTCGAA 1 cut(s) 692
PdmI GAANNNNTTC 1 cut(s) 893
PfeI GAWTC 4 cut(s) 69, 376, 548, 868
PfoI TCCNGGA 1 cut(s) 589
PkrI GCNGC 4 cut(s) 645, 773, 979, 991
PleI GAGTC 4 cut(s) 46, 331, 822, 929
PmeI GTTTAAAC 1 cut(s) 217
PpsI GAGTC 4 cut(s) 46, 331, 822, 929
Psp6I CCWGG 2 cut(s) 498, 589
PspGI CCWGG 2 cut(s) 498, 589
PspN4I GGNNCC 1 cut(s) 19
PspPI GGNCC 2 cut(s) 161, 753
PstI CTGCAG 2 cut(s) 773, 982
PstNI CAGNNNCTG 2 cut(s) 164, 311
PsuI RGATCY 3 cut(s) 116, 534, 799
RruI TCGCGA 1 cut(s) 7
RsaI GTAC 2 cut(s) 652, 767
RsaNI GTAC 2 cut(s) 651, 766
SaqAI TTAA 2 cut(s) 216, 960
SatI GCNGC 4 cut(s) 644, 772, 978, 990
Sau3AI GATC 4 cut(s) 8, 116, 534, 799
Sau96I GGNCC 2 cut(s) 161, 753
ScaI AGTACT 1 cut(s) 767
SchI GAGTC 4 cut(s) 47, 332, 823, 929
ScrFI CCNGG 4 cut(s) 500, 591, 737, 738
SetI ASST 9 cut(s) 55, 258, 440, 456, 583, 613, 755, 927, 960
SfaNI GCATC 5 cut(s) 397, 499, 621, 837, 976
SfcI CTRYAG 2 cut(s) 769, 978
SfuI TTCGAA 1 cut(s) 692
SinI GGWCC 1 cut(s) 753
SmaI CCCGGG 1 cut(s) 738
SmlI CTYRAG 1 cut(s) 530
SmoI CTYRAG 1 cut(s) 530
Sse9I AATT 4 cut(s) 111, 301, 560, 742
SsiI CCGC 1 cut(s) 522
SspMI CTAG 2 cut(s) 195, 614
StyD4I CCNGG 4 cut(s) 498, 589, 735, 736
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 1 cut(s) 909
TaqI TCGA 2 cut(s) 354, 692
TasI AATT 4 cut(s) 111, 301, 560, 742
TatI WGTACW 2 cut(s) 650, 765
TfiI GAWTC 4 cut(s) 69, 376, 548, 868
Tru1I TTAA 2 cut(s) 216, 960
Tru9I TTAA 2 cut(s) 216, 960
TscAI CASTG 2 cut(s) 295, 316
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 4 cut(s) 643, 771, 977, 989
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 4 cut(s) 530, 851, 902, 968
TspMI CCCGGG 1 cut(s) 736
TspRI CASTG 2 cut(s) 295, 316
VpaK11BI GGWCC 1 cut(s) 753
XagI CCTNNNNNAGG 1 cut(s) 542
XapI RAATTY 1 cut(s) 742
XbaI TCTAGA 2 cut(s) 194, 613
XmaI CCCGGG 1 cut(s) 736
XmnI GAANNNNTTC 1 cut(s) 893
XspI CTAG 2 cut(s) 195, 614
ZrmI AGTACT 1 cut(s) 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.