MD06G1202100.v1.1

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0013826
Physical Location & Seq
Forward (+)
33539336 .. 33541899
2564 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1202100.v1.1.491

Sequence Viewer

Length: 1191 bp
ATGTTTGTTCCAGAAATTTGGGTTTGTGAAACATGTAGATATGGAGGTACAGCCACTAAAAAATCTGTTAGAAAGGAACTCTCTCACAAGGCTGCAGGATCAAACACCTTTGAGATGGTTCGCTCTGAAATGTCGCCATCTATGCGCTCCAGAAGGCTTACTGAAGAGACCGGCAGCTCAGGTCGTCTTAGAAAGCAAATGTCACCAGGAACTGGCAGAGTAAAGTTTATTCCTTTTGAAGCTATTAGAATGTCGTCATCTGGAGCACAAAGAGTGGAAATTTCTTCACCGCGTAAATTGCACTCAAGCTCTGGCCGAGTAGATGCCAGGGAGACAATGTCTAGAAGGACTACCATTGAGTTTAAATCAGCCCCGAACAAATCCTCTTCGGAGAAGGGGAAGGAAACTTACAAAAGCGTACCTGCTGGACATGTCAAGCTTTTCGGACATGGCAGTGAAGGAATCAGTTCAACCACTCAGGCACAAGAGTCTAAATCATGCACTGAATTAAAATATAAAGCAATTCCTATCGAGTACAAGAATCAAGTTCGTAGCAAGAAAGAGTCACTGGATACTCCGTGCATCAACGATCCAGGAGGTAATTTACGTGCTGATGCTAGACCGAAGAACTCTGACTTTCAAGGATGTGATCCGCTGAACATTTTGCCCAAACCCGAGATAAATCTGCCAACTCACCCAGTTTTAGATGCTACTTGGTGCGGAAGCCTAGAGATCCTTGATACGGTTGCTTGTGGTCAATTTTATGATGGATTCCGAGCTCATATCCCGGAAAAAGTTCATCCAAAAGCTTTAGAGTGTTCAAGGCTCATGCCTAACGTGCTCCGGTGCACGTTGCTCCCTTGTTGCGACTGTTGGGCAGAAATCTTTCAGAATTACAGTCCTACCGTAAATGATATGGCGCTGTTTTTCTCCCCTGGCGATTTCGAGAGGTCTAAACAGCAGTACTTTAGCCTATTGGAACTTCTAGAGACGCGAGATATGGCGCTGCGGACTGATATAAACGGCGTCAGTCTATTGATTTTCTCTTCTAAAAGGCTGGATACGGATTCTTATGGATCGGACGTGGACTCCTTCCTGTGGGGAGCATATTACCCTGCAAAAGGCCGTCTGGCAGCTCCACCCCTTCTGAACTACGACTCCCAAGCAAATGCAGCAAATGTTGAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

397

Amino Acids

44.06

Weight (kDa)

8.72

Isoelectric Point (pI)

63.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC_AIPP2 PF23121 239 - 370 3.1e-37 AIPP2, SPOC-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013826)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08005 AT5G61100 AT5G61100 AT5G61110
fragaria_vesca FvH4_5g13941
malus_domestica MD06G1202100.v1.1
prunus_persica Prupe.5G204000_v2.0.a1 Prupe.5G204100_v2.0.a1
pyrus_communis pycom06g17810
rosa_chinensis RchiOBHm_Chr7g0183011
rosa_laevigata RLG00000005090
rosa_roxburghii Rroxscaffold_3G00270880
rosa_rugosa Rorug06G0451600
rosa_samantha Rh7AG054900 Rh7BG054400 Rh7DG054500
rosa_wichuraiana Rw7G004480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 430
AccB7I CCANNNNNTGG 1 cut(s) 212
AccII CGCG 2 cut(s) 292, 994
AciI CCGC 4 cut(s) 290, 653, 720, 1009
AclWI GGATC 5 cut(s) 106, 584, 644, 727, 1084
AcoI YGGCCR 1 cut(s) 313
AcsI RAATTY 2 cut(s) 15, 279
AcuI CTGAAG 1 cut(s) 183
AcyI GRCGYC 1 cut(s) 1026
AfaI GTAC 4 cut(s) 49, 420, 536, 965
AfiI CCNNNNNNNGG 4 cut(s) 212, 742, 1098, 1121
AflIII ACRYGT 2 cut(s) 32, 430
AgsI TTSAA 4 cut(s) 239, 471, 641, 822
AjiI CACGTC 1 cut(s) 1084
AjnI CCWGG 4 cut(s) 205, 326, 592, 934
AloI GAACNNNNNNTCC 2 cut(s) 1142, 1174
AluBI AGCT 7 cut(s) 177, 242, 309, 439, 779, 809, 1136
AluI AGCT 7 cut(s) 177, 242, 309, 439, 779, 809, 1136
Alw21I GWGCWC 4 cut(s) 268, 781, 843, 851
Alw26I GTCTC 3 cut(s) 161, 326, 983
Alw44I GTGCAC 1 cut(s) 847
AlwI GGATC 5 cut(s) 106, 584, 644, 727, 1084
AlwNI CAGNNNCTG 1 cut(s) 212
Ama87I CYCGRG 1 cut(s) 674
AoxI GGCC 2 cut(s) 313, 1123
ApaLI GTGCAC 1 cut(s) 847
ApeKI GCWGC 5 cut(s) 92, 174, 1006, 1133, 1172
ApoI RAATTY 2 cut(s) 15, 279
Asp700I GAANNNNTTC 3 cut(s) 466, 795, 885
AspLEI GCGC 3 cut(s) 147, 922, 1006
AsuC2I CCSGG 1 cut(s) 788
AsuHPI GGTGA 3 cut(s) 195, 279, 686
AvaI CYCGRG 1 cut(s) 674
BaeGI GKGCMC 1 cut(s) 851
BanII GRGCYC 1 cut(s) 781
BarI GAAGNNNNNNTAC 2 cut(s) 392, 424
Bbv12I GWGCWC 4 cut(s) 268, 781, 843, 851
BbvI GCAGC 5 cut(s) 79, 186, 993, 1145, 1184
BccI CCATC 3 cut(s) 109, 145, 761
BceAI ACGGC 2 cut(s) 1039, 1110
BciT130I CCWGG 4 cut(s) 207, 328, 594, 936
BciVI GTATCC 2 cut(s) 565, 1054
BcnI CCSGG 1 cut(s) 788
BcoDI GTCTC 3 cut(s) 161, 326, 983
BfaI CTAG 4 cut(s) 342, 618, 728, 986
BfmI CTRYAG 1 cut(s) 93
BfoI RGCGCY 2 cut(s) 923, 1007
BfuAI ACCTGC 1 cut(s) 430
BfuI GTATCC 2 cut(s) 565, 1054
BisI GCNGC 5 cut(s) 93, 175, 1007, 1134, 1173
BlsI GCNGC 5 cut(s) 94, 176, 1008, 1135, 1174
BmcAI AGTACT 1 cut(s) 965
Bme1390I CCNGG 5 cut(s) 207, 328, 594, 788, 936
BmeT110I CYCGRG 1 cut(s) 674
BmgBI CACGTC 1 cut(s) 1084
BmrFI CCNGG 5 cut(s) 207, 328, 594, 788, 936
BmrI ACTGGG 1 cut(s) 692
BmsI GCATC 4 cut(s) 313, 591, 604, 697
BmuI ACTGGG 1 cut(s) 692
BpmI CTGGAG 2 cut(s) 133, 282
Bpu10I CCTNAGC 1 cut(s) 178
BpuEI CTTGAG 1 cut(s) 289
BpuMI CCSGG 1 cut(s) 788
BsaAI YACGTR 1 cut(s) 608
BsaHI GRCGYC 1 cut(s) 1026
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 2 cut(s) 327, 934
BsaWI WCCGGW 1 cut(s) 843
BsaXI ACNNNNNCTCC 6 cut(s) 323, 353, 1073, 1103, 1142, 1172
Bsc4I CCNNNNNNNGG 4 cut(s) 212, 742, 1098, 1121
Bse118I RCCGGY 1 cut(s) 170
Bse1I ACTGG 3 cut(s) 217, 573, 698
BseBI CCWGG 4 cut(s) 207, 328, 594, 936
BseDI CCNNGG 2 cut(s) 327, 934
BseGI GGATG 2 cut(s) 650, 799
BseLI CCNNNNNNNGG 4 cut(s) 212, 742, 1098, 1121
BseMII CTCAG 2 cut(s) 192, 491
BseNI ACTGG 3 cut(s) 217, 573, 698
BseSI GKGCMC 1 cut(s) 851
BseXI GCAGC 5 cut(s) 79, 186, 993, 1145, 1184
Bsh1236I CGCG 2 cut(s) 292, 994
BshFI GGCC 2 cut(s) 315, 1125
BsiHKAI GWGCWC 4 cut(s) 268, 781, 843, 851
BsiHKCI CYCGRG 1 cut(s) 674
BsiSI CCGG 3 cut(s) 171, 788, 844
BslI CCNNNNNNNGG 4 cut(s) 212, 742, 1098, 1121
BsmAI GTCTC 3 cut(s) 161, 326, 983
BsmBI CGTCTC 1 cut(s) 983
BsnI GGCC 2 cut(s) 315, 1125
Bso31I GGTCTC 1 cut(s) 161
BsoBI CYCGRG 1 cut(s) 674
Bsp1286I GDGCHC 4 cut(s) 268, 781, 843, 851
Bsp143I GATC 5 cut(s) 98, 589, 649, 732, 1076
BspACI CCGC 4 cut(s) 290, 653, 720, 1009
BspANI GGCC 2 cut(s) 315, 1125
BspCNI CTCAG 2 cut(s) 191, 490
BspFNI CGCG 2 cut(s) 292, 994
BspMAI CTGCAG 1 cut(s) 97
BspMI ACCTGC 1 cut(s) 430
BspPI GGATC 5 cut(s) 106, 584, 644, 727, 1084
BspTNI GGTCTC 1 cut(s) 161
BsrFI RCCGGY 1 cut(s) 170
BsrI ACTGG 3 cut(s) 217, 573, 698
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 2 cut(s) 327, 934
BssMI GATC 5 cut(s) 98, 589, 649, 732, 1076
BssNI GRCGYC 1 cut(s) 1026
Bst2UI CCWGG 4 cut(s) 207, 328, 594, 936
Bst4CI ACNGT 4 cut(s) 745, 872, 899, 907
Bst6I CTCTTC 3 cut(s) 159, 391, 1051
BstACI GRCGYC 1 cut(s) 1026
BstBAI YACGTR 1 cut(s) 608
BstDEI CTNAG 3 cut(s) 178, 188, 477
BstENI CCTNNNNNAGG 1 cut(s) 1119
BstF5I GGATG 2 cut(s) 650, 799
BstFNI CGCG 2 cut(s) 292, 994
BstH2I RGCGCY 2 cut(s) 923, 1007
BstHHI GCGC 3 cut(s) 147, 922, 1006
BstKTI GATC 5 cut(s) 101, 592, 652, 735, 1079
BstMAI GTCTC 3 cut(s) 161, 326, 983
BstMBI GATC 5 cut(s) 98, 589, 649, 732, 1076
BstMWI GCNNNNNNNGC 4 cut(s) 142, 298, 838, 1172
BstNI CCWGG 4 cut(s) 207, 328, 594, 936
BstNSI RCATGY 2 cut(s) 36, 434
BstSCI CCNGG 5 cut(s) 205, 326, 592, 786, 934
BstSFI CTRYAG 1 cut(s) 93
BstSLI GKGCMC 1 cut(s) 851
BstUI CGCG 2 cut(s) 292, 994
BstV1I GCAGC 5 cut(s) 79, 186, 993, 1145, 1184
BstX2I RGATCY 1 cut(s) 732
BstXI CCANNNNNNTGG 1 cut(s) 18
BstYI RGATCY 1 cut(s) 732
BsuI GTATCC 2 cut(s) 565, 1054
BsuRI GGCC 2 cut(s) 315, 1125
BtrI CACGTC 1 cut(s) 1084
BtsCI GGATG 2 cut(s) 650, 799
BtsI GCAGTG 1 cut(s) 460
BtsIMutI CAGTG 3 cut(s) 460, 501, 566
BveI ACCTGC 1 cut(s) 430
CaiI CAGNNNCTG 1 cut(s) 212
CfoI GCGC 3 cut(s) 147, 922, 1006
Cfr10I RCCGGY 1 cut(s) 170
CseI GACGC 2 cut(s) 1000, 1015
Csp6I GTAC 4 cut(s) 48, 419, 535, 964
CviAII CATG 5 cut(s) 33, 431, 449, 498, 829
CviQI GTAC 4 cut(s) 48, 419, 535, 964
DdeI CTNAG 3 cut(s) 178, 188, 477
DpnI GATC 5 cut(s) 100, 591, 651, 734, 1078
DpnII GATC 5 cut(s) 98, 589, 649, 732, 1076
DraI TTTAAA 1 cut(s) 364
EaeI YGGCCR 1 cut(s) 313
Eam1104I CTCTTC 3 cut(s) 159, 391, 1051
EarI CTCTTC 3 cut(s) 159, 391, 1051
Ecl136II GAGCTC 1 cut(s) 779
Eco24I GRGCYC 1 cut(s) 781
Eco31I GGTCTC 1 cut(s) 161
Eco53kI GAGCTC 1 cut(s) 779
Eco57I CTGAAG 1 cut(s) 183
Eco88I CYCGRG 1 cut(s) 674
EcoICRI GAGCTC 1 cut(s) 779
EcoNI CCTNNNNNAGG 1 cut(s) 1119
EcoRII CCWGG 4 cut(s) 205, 326, 592, 934
EcoT38I GRGCYC 1 cut(s) 781
Esp3I CGTCTC 1 cut(s) 983
FaeI CATG 5 cut(s) 36, 434, 452, 501, 832
FatI CATG 5 cut(s) 32, 430, 448, 497, 828
Fnu4HI GCNGC 5 cut(s) 93, 175, 1007, 1134, 1173
FokI GGATG 2 cut(s) 657, 786
FriOI GRGCYC 1 cut(s) 781
Fsp4HI GCNGC 5 cut(s) 93, 175, 1007, 1134, 1173
FspBI CTAG 4 cut(s) 342, 618, 728, 986
GlaI GCGC 3 cut(s) 146, 921, 1005
GluI GCNGC 5 cut(s) 93, 175, 1007, 1134, 1173
GsuI CTGGAG 2 cut(s) 133, 282
HaeII RGCGCY 2 cut(s) 923, 1007
HaeIII GGCC 2 cut(s) 315, 1125
HapII CCGG 3 cut(s) 171, 788, 844
HgaI GACGC 2 cut(s) 1000, 1015
HhaI GCGC 3 cut(s) 147, 922, 1006
Hin1I GRCGYC 1 cut(s) 1026
Hin1II CATG 5 cut(s) 36, 434, 452, 501, 832
Hin6I GCGC 3 cut(s) 145, 920, 1004
HinP1I GCGC 3 cut(s) 145, 920, 1004
HindIII AAGCTT 2 cut(s) 437, 807
HinfI GANTC 8 cut(s) 462, 488, 541, 563, 771, 1067, 1088, 1157
HpaII CCGG 3 cut(s) 171, 788, 844
HphI GGTGA 3 cut(s) 195, 279, 686
Hpy166II GTNNAC 2 cut(s) 849, 1087
Hpy188I TCNGA 8 cut(s) 127, 391, 446, 634, 776, 891, 1081, 1149
Hpy188III TCNNGA 6 cut(s) 11, 150, 261, 342, 946, 986
Hpy8I GTNNAC 2 cut(s) 849, 1087
HpyAV CCTTC 7 cut(s) 147, 339, 388, 394, 452, 1102, 1154
HpyCH4III ACNGT 4 cut(s) 745, 872, 899, 907
HpyCH4IV ACGT 4 cut(s) 607, 837, 851, 1083
HpyCH4V TGCA 7 cut(s) 95, 301, 501, 582, 849, 1118, 1172
HpyF10VI GCNNNNNNNGC 4 cut(s) 142, 298, 838, 1172
HpyF3I CTNAG 3 cut(s) 178, 188, 477
HpySE526I ACGT 4 cut(s) 607, 837, 851, 1083
Hsp92I GRCGYC 1 cut(s) 1026
Hsp92II CATG 5 cut(s) 36, 434, 452, 501, 832
HspAI GCGC 3 cut(s) 145, 920, 1004
Kzo9I GATC 5 cut(s) 98, 589, 649, 732, 1076
LmnI GCTCC 6 cut(s) 152, 263, 846, 861, 1103, 1141
Lsp1109I GCAGC 5 cut(s) 79, 186, 993, 1145, 1184
LweI GCATC 4 cut(s) 313, 591, 604, 697
MaeI CTAG 4 cut(s) 342, 618, 728, 986
MaeII ACGT 4 cut(s) 607, 837, 851, 1083
MaeIII GTNAC 2 cut(s) 201, 564
MalI GATC 5 cut(s) 100, 591, 651, 734, 1078
MboI GATC 5 cut(s) 98, 589, 649, 732, 1076
MboII GAAGA 5 cut(s) 176, 276, 378, 637, 1038
MflI RGATCY 1 cut(s) 732
MhlI GDGCHC 4 cut(s) 268, 781, 843, 851
MluCI AATT 8 cut(s) 15, 279, 296, 506, 522, 601, 758, 892
MlyI GAGTC 4 cut(s) 497, 572, 1082, 1151
MnlI CCTC 4 cut(s) 38, 394, 590, 942
MroXI GAANNNNTTC 3 cut(s) 466, 795, 885
MseI TTAA 2 cut(s) 363, 509
MslI CAYNNNNRTG 1 cut(s) 453
MspA1I CMGCKG 1 cut(s) 655
MspI CCGG 3 cut(s) 171, 788, 844
MspR9I CCNGG 5 cut(s) 207, 328, 594, 788, 936
MvaI CCWGG 4 cut(s) 207, 328, 594, 936
MvnI CGCG 2 cut(s) 292, 994
MwoI GCNNNNNNNGC 4 cut(s) 142, 298, 838, 1172
NciI CCSGG 1 cut(s) 788
NdeII GATC 5 cut(s) 98, 589, 649, 732, 1076
NlaIII CATG 5 cut(s) 36, 434, 452, 501, 832
NmeAIII GCCGAG 1 cut(s) 341
NmuCI GTSAC 2 cut(s) 201, 564
NspI RCATGY 2 cut(s) 36, 434
PciI ACATGT 2 cut(s) 32, 430
PdmI GAANNNNTTC 3 cut(s) 466, 795, 885
PfeI GAWTC 4 cut(s) 462, 541, 771, 1067
PflFI GACNNNGTC 1 cut(s) 337
PflMI CCANNNNNTGG 1 cut(s) 212
PfoI TCCNGGA 2 cut(s) 592, 786
PkrI GCNGC 5 cut(s) 94, 176, 1008, 1135, 1174
PleI GAGTC 4 cut(s) 496, 571, 1082, 1151
PpsI GAGTC 4 cut(s) 496, 571, 1082, 1151
Ppu21I YACGTR 1 cut(s) 608
PscI ACATGT 2 cut(s) 32, 430
Psp124BI GAGCTC 1 cut(s) 781
Psp6I CCWGG 4 cut(s) 205, 326, 592, 934
PspGI CCWGG 4 cut(s) 205, 326, 592, 934
PstI CTGCAG 1 cut(s) 97
PstNI CAGNNNCTG 1 cut(s) 212
PsuI RGATCY 1 cut(s) 732
PsyI GACNNNGTC 1 cut(s) 337
RsaI GTAC 4 cut(s) 49, 420, 536, 965
RsaNI GTAC 4 cut(s) 48, 419, 535, 964
RseI CAYNNNNRTG 1 cut(s) 453
SacI GAGCTC 1 cut(s) 781
SaqAI TTAA 2 cut(s) 363, 509
SatI GCNGC 5 cut(s) 93, 175, 1007, 1134, 1173
Sau3AI GATC 5 cut(s) 98, 589, 649, 732, 1076
ScaI AGTACT 1 cut(s) 965
SchI GAGTC 4 cut(s) 497, 572, 1082, 1151
ScrFI CCNGG 5 cut(s) 207, 328, 594, 788, 936
SduI GDGCHC 4 cut(s) 268, 781, 843, 851
SfaNI GCATC 4 cut(s) 313, 591, 604, 697
SfcI CTRYAG 1 cut(s) 93
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 1 cut(s) 304
SmoI CTYRAG 1 cut(s) 304
Sse9I AATT 8 cut(s) 15, 279, 296, 506, 522, 601, 758, 892
SsiI CCGC 4 cut(s) 290, 653, 720, 1009
SspMI CTAG 4 cut(s) 342, 618, 728, 986
SstI GAGCTC 1 cut(s) 781
StyD4I CCNGG 5 cut(s) 205, 326, 592, 786, 934
TaaI ACNGT 4 cut(s) 745, 872, 899, 907
TaiI ACGT 4 cut(s) 610, 840, 854, 1086
TaqI TCGA 2 cut(s) 531, 945
TaqII GACCGA 1 cut(s) 637
TasI AATT 8 cut(s) 15, 279, 296, 506, 522, 601, 758, 892
TatI WGTACW 2 cut(s) 534, 963
TfiI GAWTC 4 cut(s) 462, 541, 771, 1067
Tru1I TTAA 2 cut(s) 363, 509
Tru9I TTAA 2 cut(s) 363, 509
TscAI CASTG 3 cut(s) 460, 508, 573
TseFI GTSAC 2 cut(s) 201, 564
TseI GCWGC 5 cut(s) 92, 174, 1006, 1133, 1172
Tsp45I GTSAC 2 cut(s) 201, 564
TspDTI ATGAA 1 cut(s) 788
TspGWI ACGGA 2 cut(s) 567, 1079
TspRI CASTG 3 cut(s) 460, 508, 573
Tth111I GACNNNGTC 1 cut(s) 337
Van91I CCANNNNNTGG 1 cut(s) 212
VneI GTGCAC 1 cut(s) 847
XagI CCTNNNNNAGG 1 cut(s) 1119
XapI RAATTY 2 cut(s) 15, 279
XbaI TCTAGA 2 cut(s) 341, 985
XceI RCATGY 2 cut(s) 36, 434
XmnI GAANNNNTTC 3 cut(s) 466, 795, 885
XspI CTAG 4 cut(s) 342, 618, 728, 986
ZrmI AGTACT 1 cut(s) 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.