RchiOBHm_Chr7g0183011

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0013826
Physical Location & Seq
Forward (+)
4071586 .. 4074896
3311 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16325

Sequence Viewer

Length: 270 bp
ATGCCTAATGTGCTGCCTTGTACTATGCTCTCTTGTTGCAATGTATGGGAAGAAATATTTCAGAACGAAATCCCCACCATTGAGGATATTGCAGTATTCTTTTTCCCTGGCAATTTTGAGAGGTCCAAAGAGCAGTACTTTAGCCTTGTACAAGTTATGGAGACACAAGATCTGATACTGAGGAGTCTTATAAAGGGCGTCAATCTATTGATTTTATCTTCTAAGAGGCTGCATCTGGAATTCCGTAACGTATTGTGTGAAATATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.41

Weight (kDa)

4.81

Isoelectric Point (pI)

65.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC_AIPP2 PF23121 1 - 83 1.4e-23 AIPP2, SPOC-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013826)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08005 AT5G61100 AT5G61100 AT5G61110
fragaria_vesca FvH4_5g13941
malus_domestica MD06G1202100.v1.1
prunus_persica Prupe.5G204000_v2.0.a1 Prupe.5G204100_v2.0.a1
pyrus_communis pycom06g17810
rosa_chinensis RchiOBHm_Chr7g0183011
rosa_laevigata RLG00000005090
rosa_roxburghii Rroxscaffold_3G00270880
rosa_rugosa Rorug06G0451600
rosa_samantha Rh7AG054900 Rh7BG054400 Rh7DG054500
rosa_wichuraiana Rw7G004480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 191, 268
AcsI RAATTY 1 cut(s) 239
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 3 cut(s) 22, 137, 150
AjnI CCWGG 1 cut(s) 106
Alw26I GTCTC 1 cut(s) 155
ApeKI GCWGC 2 cut(s) 13, 229
ApoI RAATTY 1 cut(s) 239
Asp700I GAANNNNTTC 1 cut(s) 57
AspS9I GGNCC 1 cut(s) 123
AvaII GGWCC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 216
BciT130I CCWGG 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 155
BglII AGATCT 1 cut(s) 169
BisI GCNGC 2 cut(s) 14, 230
BlsI GCNGC 2 cut(s) 15, 231
BmcAI AGTACT 1 cut(s) 137
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 123
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 1 cut(s) 241
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 106
Bse3DI GCAATG 1 cut(s) 46
BseBI CCWGG 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 106
BseMI GCAATG 1 cut(s) 46
BseMII CTCAG 1 cut(s) 170
BseRI GAGGAG 1 cut(s) 196
BseXI GCAGC 1 cut(s) 216
BsmAI GTCTC 1 cut(s) 155
Bsp1407I TGTACA 1 cut(s) 148
Bsp143I GATC 1 cut(s) 169
BspCNI CTCAG 1 cut(s) 171
BsrDI GCAATG 1 cut(s) 46
BsrGI TGTACA 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 1 cut(s) 169
BssNI GRCGYC 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 108
BstACI GRCGYC 1 cut(s) 198
BstAUI TGTACA 1 cut(s) 148
BstDEI CTNAG 2 cut(s) 179, 222
BstKTI GATC 1 cut(s) 172
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 216
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 123
CseI GACGC 1 cut(s) 187
Csp6I GTAC 3 cut(s) 21, 136, 149
CviJI RGCY 2 cut(s) 144, 229
CviKI_1 RGCY 2 cut(s) 144, 229
CviQI GTAC 3 cut(s) 21, 136, 149
DdeI CTNAG 2 cut(s) 179, 222
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 123
EcoRI GAATTC 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 106
FaiI YATR 5 cut(s) 26, 46, 158, 191, 268
Fnu4HI GCNGC 2 cut(s) 14, 230
Fsp4HI GCNGC 2 cut(s) 14, 230
GluI GCNGC 2 cut(s) 14, 230
HgaI GACGC 1 cut(s) 187
Hin1I GRCGYC 1 cut(s) 198
HinfI GANTC 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 63, 174
Hpy188III TCNNGA 1 cut(s) 236
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 3 cut(s) 39, 92, 232
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 2 cut(s) 179, 222
HpySE526I ACGT 1 cut(s) 249
Hsp92I GRCGYC 1 cut(s) 198
Kzo9I GATC 1 cut(s) 169
LpnPI CCDG 3 cut(s) 93, 120, 221
Lsp1109I GCAGC 1 cut(s) 216
LweI GCATC 1 cut(s) 241
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 1 cut(s) 245
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 2 cut(s) 62, 210
MflI RGATCY 1 cut(s) 169
MluCI AATT 2 cut(s) 112, 239
MlyI GAGTC 1 cut(s) 193
MnlI CCTC 4 cut(s) 76, 114, 174, 219
MroXI GAANNNNTTC 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 108
MvaI CCWGG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 57
PkrI GCNGC 2 cut(s) 15, 231
PleI GAGTC 1 cut(s) 192
PpsI GAGTC 1 cut(s) 192
PsiI TTATAA 2 cut(s) 191, 268
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspPI GGNCC 1 cut(s) 123
PsuI RGATCY 1 cut(s) 169
RsaI GTAC 3 cut(s) 22, 137, 150
RsaNI GTAC 3 cut(s) 21, 136, 149
SatI GCNGC 2 cut(s) 14, 230
Sau3AI GATC 1 cut(s) 169
Sau96I GGNCC 1 cut(s) 123
ScaI AGTACT 1 cut(s) 137
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 1 cut(s) 108
SetI ASST 2 cut(s) 125, 252
SfaNI GCATC 1 cut(s) 241
SgeI CNNG 8 cut(s) 30, 45, 119, 120, 158, 164, 179, 248
SinI GGWCC 1 cut(s) 123
Sse9I AATT 2 cut(s) 112, 239
SspI AATATT 2 cut(s) 57, 264
StyD4I CCNGG 1 cut(s) 106
TaiI ACGT 1 cut(s) 252
TasI AATT 2 cut(s) 112, 239
TatI WGTACW 3 cut(s) 20, 135, 148
TseI GCWGC 2 cut(s) 13, 229
TspGWI ACGGA 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 123
XapI RAATTY 1 cut(s) 239
XmnI GAANNNNTTC 1 cut(s) 57
ZrmI AGTACT 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.