Prupe.5G204100_v2.0.a1

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0013826
Physical Location & Seq
Forward (+)
16377924 .. 16379674
1751 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G204100.1

Sequence Viewer

Length: 426 bp
ATGGTTTCTTGTGGTCAATTTTGTGATGGGTTCCGGGCTCATCTTCCGGGGAAAGTCCATCCTGAAGCTGTAGAGTATTCAAGGCTCATGCCTAACGTGCTCCAGTGTACGTTGCTCCTTTGTAGCAGTGTATTGGCAGAAATCTTTGAGAATGACCGCCCCACTGTAAATGATATGGCACTGTTCTTTTCCCCTGGCGATTTTGAGAGGTCTAAACAACAGTATCTTAGCCTCTTGGGACTTCTAGAGATGCGAGAAATGGCACTGAGGAGTCATATAAATGGTGTCAATCTATTGATTTCGTCTTCTAAGAGGCTAAATCTAGATTCTTGTGGACTGGAAGTAATGGAATCCTTCCTGTGGGGAGTATATTGCCCTGCAAAAGGCCATCTGGCAGTTCCCTCTCTTCTTTTCTCTGACTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.7

Weight (kDa)

5.48

Isoelectric Point (pI)

58.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013826)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08005 AT5G61100 AT5G61100 AT5G61110
fragaria_vesca FvH4_5g13941
malus_domestica MD06G1202100.v1.1
prunus_persica Prupe.5G204000_v2.0.a1 Prupe.5G204100_v2.0.a1
pyrus_communis pycom06g17810
rosa_chinensis RchiOBHm_Chr7g0183011
rosa_laevigata RLG00000005090
rosa_roxburghii Rroxscaffold_3G00270880
rosa_rugosa Rorug06G0451600
rosa_samantha Rh7AG054900 Rh7BG054400 Rh7DG054500
rosa_wichuraiana Rw7G004480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 157
AcuI CTGAAG 1 cut(s) 84
AfaI GTAC 1 cut(s) 109
AfiI CCNNNNNNNGG 2 cut(s) 360, 383
AgsI TTSAA 1 cut(s) 81
AjnI CCWGG 1 cut(s) 193
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Alw21I GWGCWC 1 cut(s) 102
AoxI GGCC 1 cut(s) 385
AsuC2I CCSGG 2 cut(s) 35, 48
BaeI ACNNNNGTAYC 2 cut(s) 206, 239
BanII GRGCYC 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 102
BccI CCATC 3 cut(s) 20, 66, 396
BciT130I CCWGG 1 cut(s) 195
BcnI CCSGG 2 cut(s) 35, 48
BfaI CTAG 2 cut(s) 245, 323
BfmI CTRYAG 1 cut(s) 69
Bme1390I CCNGG 3 cut(s) 35, 48, 195
BmiI GGNNCC 1 cut(s) 32
BmrFI CCNGG 3 cut(s) 35, 48, 195
BmsI GCATC 1 cut(s) 240
BpiI GAAGAC 1 cut(s) 297
BpmI CTGGAG 1 cut(s) 86
BpuMI CCSGG 2 cut(s) 35, 48
BsaJI CCNNGG 2 cut(s) 47, 193
Bsc4I CCNNNNNNNGG 2 cut(s) 360, 383
Bse1I ACTGG 2 cut(s) 103, 342
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 2 cut(s) 47, 193
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 2 cut(s) 360, 383
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 2 cut(s) 103, 342
BseRI GAGGAG 1 cut(s) 283
BshFI GGCC 1 cut(s) 387
BsiHKAI GWGCWC 1 cut(s) 102
BsiSI CCGG 2 cut(s) 34, 47
BslFI GGGAC 1 cut(s) 252
BslI CCNNNNNNNGG 2 cut(s) 360, 383
BsmFI GGGAC 1 cut(s) 252
BsnI GGCC 1 cut(s) 387
Bsp1286I GDGCHC 2 cut(s) 40, 102
BspACI CCGC 1 cut(s) 157
BspANI GGCC 1 cut(s) 387
BspCNI CTCAG 1 cut(s) 258
BspLI GGNNCC 1 cut(s) 32
BsrI ACTGG 2 cut(s) 103, 342
BssECI CCNNGG 2 cut(s) 47, 193
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 3 cut(s) 166, 183, 222
Bst6I CTCTTC 1 cut(s) 411
BstDEI CTNAG 3 cut(s) 227, 266, 309
BstENI CCTNNNNNAGG 1 cut(s) 381
BstF5I GGATG 1 cut(s) 58
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstNI CCWGG 1 cut(s) 195
BstSCI CCNGG 3 cut(s) 33, 46, 193
BstSFI CTRYAG 1 cut(s) 69
BstV2I GAAGAC 1 cut(s) 297
BsuRI GGCC 1 cut(s) 387
BtsCI GGATG 1 cut(s) 58
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 5 cut(s) 110, 133, 162, 179, 263
Csp6I GTAC 1 cut(s) 108
CviAII CATG 1 cut(s) 88
CviJI RGCY 6 cut(s) 38, 68, 85, 231, 316, 387
CviKI_1 RGCY 6 cut(s) 38, 68, 85, 231, 316, 387
CviQI GTAC 1 cut(s) 108
DdeI CTNAG 3 cut(s) 227, 266, 309
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Eco24I GRGCYC 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 84
EcoNI CCTNNNNNAGG 1 cut(s) 381
EcoRII CCWGG 1 cut(s) 193
EcoT38I GRGCYC 1 cut(s) 40
FaeI CATG 1 cut(s) 91
FaiI YATR 5 cut(s) 89, 176, 276, 278, 370
FaqI GGGAC 1 cut(s) 252
FatI CATG 1 cut(s) 87
FokI GGATG 1 cut(s) 45
FriOI GRGCYC 1 cut(s) 40
FspBI CTAG 2 cut(s) 245, 323
GsuI CTGGAG 1 cut(s) 86
HaeIII GGCC 1 cut(s) 387
HapII CCGG 2 cut(s) 34, 47
Hin1II CATG 1 cut(s) 91
HinfI GANTC 4 cut(s) 271, 326, 350, 419
HpaII CCGG 2 cut(s) 34, 47
Hpy166II GTNNAC 2 cut(s) 108, 335
Hpy188I TCNGA 1 cut(s) 418
Hpy188III TCNNGA 3 cut(s) 62, 245, 323
Hpy8I GTNNAC 2 cut(s) 108, 335
HpyAV CCTTC 1 cut(s) 364
HpyCH4III ACNGT 3 cut(s) 166, 183, 222
HpyCH4IV ACGT 2 cut(s) 96, 110
HpyCH4V TGCA 1 cut(s) 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpyF3I CTNAG 3 cut(s) 227, 266, 309
HpySE526I ACGT 2 cut(s) 96, 110
Hsp92II CATG 1 cut(s) 91
LmnI GCTCC 2 cut(s) 105, 120
LweI GCATC 1 cut(s) 240
MaeI CTAG 2 cut(s) 245, 323
MaeII ACGT 2 cut(s) 96, 110
MboII GAAGA 3 cut(s) 35, 297, 398
MhlI GDGCHC 2 cut(s) 40, 102
MluCI AATT 1 cut(s) 17
MlyI GAGTC 2 cut(s) 280, 413
MnlI CCTC 5 cut(s) 201, 242, 261, 306, 412
MseI TTAA 1 cut(s) 424
MslI CAYNNNNRTG 1 cut(s) 279
MspI CCGG 2 cut(s) 34, 47
MspR9I CCNGG 3 cut(s) 35, 48, 195
MvaI CCWGG 1 cut(s) 195
MwoI GCNNNNNNNGC 1 cut(s) 97
NciI CCSGG 2 cut(s) 35, 48
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 1 cut(s) 32
PfeI GAWTC 2 cut(s) 326, 350
PleI GAGTC 2 cut(s) 279, 413
PpsI GAGTC 2 cut(s) 279, 413
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 1 cut(s) 32
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
RseI CAYNNNNRTG 1 cut(s) 279
SaqAI TTAA 1 cut(s) 424
SchI GAGTC 2 cut(s) 280, 413
ScrFI CCNGG 3 cut(s) 35, 48, 195
SduI GDGCHC 2 cut(s) 40, 102
SetI ASST 4 cut(s) 70, 99, 113, 212
SfaNI GCATC 1 cut(s) 240
SfcI CTRYAG 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 279
Sse9I AATT 1 cut(s) 17
SsiI CCGC 1 cut(s) 157
SspMI CTAG 2 cut(s) 245, 323
StyD4I CCNGG 3 cut(s) 33, 46, 193
TaaI ACNGT 3 cut(s) 166, 183, 222
TaiI ACGT 2 cut(s) 99, 113
TasI AATT 1 cut(s) 17
TfiI GAWTC 2 cut(s) 326, 350
Tru1I TTAA 1 cut(s) 424
Tru9I TTAA 1 cut(s) 424
TscAI CASTG 5 cut(s) 110, 133, 169, 186, 270
TspRI CASTG 5 cut(s) 110, 133, 169, 186, 270
XagI CCTNNNNNAGG 1 cut(s) 381
XbaI TCTAGA 2 cut(s) 244, 322
XspI CTAG 2 cut(s) 245, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.