AT5G08030

glycerophosphodiester phosphodiesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007756
Physical Location & Seq
Reverse (-)
2575025 .. 2576819
1795 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G08030.2

Sequence Viewer

Length: 1119 bp
ATGGCCTTCAAGTATCTTCTACCATTGCTTTTACTGTCATTGTTGGTTGCTAATTGTGCCTCAAGGCCTTTGTATCGTCTCCCAAGCGAAGCAAAACATGCAACCAAGAAACCACTTCAGACTTCCCGTCCTTACAACCTTGCACACAGAGGATCAAACGGAGAGCTCCCTGAAGAAACTGCTCCTGCATATATGAGGGCCATAGAGGAGGGTGCAGATTTTATAGAAACCGATATTTTGTCTTCCAAAGACGGTGTTCTTATATGTCACCACGATGTTAATCTCGATGATACAACCGATGTTGCAGACCATAAGGAGTTTGCAGACCGTAAGAGGACTTATGAAGTCCAAGGAATGAACATGACCGGCTTCTTCACTGTTGATTTTACTCTCAAAGAGCTGAAAACACTTGGTGCAAAGCAGAGGTATCCTTTCAGGGATCAACAATACAATGGTAAATTCCCGATTATTACCTTCGACGAGTATATTTCGATAGCACTGGATGCACCTAGAGTGGTTGGGATATATCCAGAGATCAAGAATCCGGTTTTCATGAATCAGCAAGTGAAGTGGGCGGATGGTAAAAAATTTGAAGATAAATTTGTGGAAACTTTGAAGAAATATGGATACAAAGGCTCATATCTGTCTGAAGATTGGTTAAAACAGCCAATATTTATTCAGTCTTTTGCAGCAACTTCGCTAGTTTACATTTCAAACATGACAGACTCACCAAAATTGTTTTTGATCGACGATGTCACTATTCTTACCGAAGACACTAATAAGACTTACGCAGAGATCACATCAGACGCATATTTGGATTACATTAAACCATATGTAATTGGGATTGGTCCATGGAAAGACACAATTGTTCCTGTGAACAATAACCGTCTCATGACACCAACAGATTTAGTTGCGAGAGCACATTCGCGTAATCTTCAGGTCCATCCATACACATACCGTAATGAGAACCAGTTTCTGCATTTAGAGTTTAATCAGGACCCTTACCTAGAGTATGATTATTGGCTCAATAAGATCGGTGTTGATGGTTTGTTCACTGATTTCACTGGAAGTCTACACAATTACCAGGAATTGAAGTCTCCTTTGCCTCAGCAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00564 map00564
Pfam Domains
Protein Families
GDPD

Protein Analysis

372

Amino Acids

42.88

Weight (kDa)

5.54

Isoelectric Point (pI)

34.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDPD PF03009 64 - 371 6.8e-58 Glycerophosphoryl diester phosphodiesterase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1072
AccII CGCG 1 cut(s) 928
AciI CCGC 1 cut(s) 575
AclWI GGATC 2 cut(s) 160, 447
AcsI RAATTY 3 cut(s) 458, 587, 599
AcuI CTGAAG 4 cut(s) 101, 192, 669, 920
AdeI CACNNNGTG 1 cut(s) 413
AgsI TTSAA 5 cut(s) 10, 593, 616, 714, 1093
AhdI GACNNNNNGTC 1 cut(s) 126
AjnI CCWGG 1 cut(s) 1083
AluBI AGCT 2 cut(s) 166, 400
AluI AGCT 2 cut(s) 166, 400
Alw21I GWGCWC 2 cut(s) 168, 922
Alw26I GTCTC 3 cut(s) 83, 893, 1101
AlwI GGATC 2 cut(s) 160, 447
AlwNI CAGNNNCTG 1 cut(s) 976
AoxI GGCC 3 cut(s) 3, 65, 198
ApeKI GCWGC 1 cut(s) 689
ApoI RAATTY 3 cut(s) 458, 587, 599
AspS9I GGNCC 4 cut(s) 198, 848, 940, 997
AsuHPI GGTGA 2 cut(s) 260, 720
AvaII GGWCC 3 cut(s) 848, 940, 997
BanII GRGCYC 1 cut(s) 168
BbsI GAAGAC 2 cut(s) 234, 777
Bbv12I GWGCWC 2 cut(s) 168, 922
BbvCI CCTCAGC 1 cut(s) 1107
BbvI GCAGC 1 cut(s) 701
BccI CCATC 3 cut(s) 572, 951, 1037
BcgI CGANNNNNNTGC 2 cut(s) 678, 712
BciT130I CCWGG 1 cut(s) 1085
BciVI GTATCC 2 cut(s) 438, 620
BcoDI GTCTC 3 cut(s) 83, 893, 1101
BfaI CTAG 3 cut(s) 510, 701, 1007
BfuI GTATCC 2 cut(s) 438, 620
BisI GCNGC 1 cut(s) 690
BlsI GCNGC 1 cut(s) 691
Bme1390I CCNGG 1 cut(s) 1085
Bme18I GGWCC 3 cut(s) 848, 940, 997
BmeRI GACNNNNNGTC 1 cut(s) 126
BmgT120I GGNCC 4 cut(s) 198, 848, 940, 997
BmiI GGNNCC 1 cut(s) 999
BmrFI CCNGG 1 cut(s) 1085
BmsI GCATC 1 cut(s) 493
BpiI GAAGAC 2 cut(s) 234, 777
Bpu10I CCTNAGC 1 cut(s) 1107
BpuEI CTTGAG 1 cut(s) 46
BsaBI GATNNNNATC 1 cut(s) 279
BsaJI CCNNGG 2 cut(s) 349, 851
BsaWI WCCGGW 1 cut(s) 544
Bse118I RCCGGY 1 cut(s) 365
Bse1I ACTGG 3 cut(s) 504, 970, 1069
Bse3DI GCAATG 1 cut(s) 23
Bse8I GATNNNNATC 1 cut(s) 279
BseBI CCWGG 1 cut(s) 1085
BseDI CCNNGG 2 cut(s) 349, 851
BseGI GGATG 3 cut(s) 508, 583, 943
BseJI GATNNNNATC 1 cut(s) 279
BseMI GCAATG 1 cut(s) 23
BseNI ACTGG 3 cut(s) 504, 970, 1069
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 701
BsgI GTGCAG 1 cut(s) 234
Bsh1236I CGCG 1 cut(s) 928
BshFI GGCC 3 cut(s) 5, 67, 200
BsiHKAI GWGCWC 2 cut(s) 168, 922
BsiSI CCGG 2 cut(s) 366, 545
BsmAI GTCTC 3 cut(s) 83, 893, 1101
BsmBI CGTCTC 2 cut(s) 83, 893
BsnI GGCC 3 cut(s) 5, 67, 200
Bsp1286I GDGCHC 2 cut(s) 168, 922
Bsp143I GATC 6 cut(s) 152, 439, 534, 744, 795, 1032
Bsp19I CCATGG 1 cut(s) 851
BspACI CCGC 1 cut(s) 575
BspANI GGCC 3 cut(s) 5, 67, 200
BspFNI CGCG 1 cut(s) 928
BspHI TCATGA 2 cut(s) 552, 891
BspLI GGNNCC 1 cut(s) 999
BspPI GGATC 2 cut(s) 160, 447
BsrDI GCAATG 1 cut(s) 23
BsrFI RCCGGY 1 cut(s) 365
BsrI ACTGG 3 cut(s) 504, 970, 1069
BssAI RCCGGY 1 cut(s) 365
BssECI CCNNGG 2 cut(s) 349, 851
BssMI GATC 6 cut(s) 152, 439, 534, 744, 795, 1032
BssT1I CCWWGG 2 cut(s) 349, 851
Bst2UI CCWGG 1 cut(s) 1085
Bst4CI ACNGT 7 cut(s) 36, 254, 329, 379, 887, 959, 1116
BstAPI GCANNNNNTGC 2 cut(s) 98, 503
BstDEI CTNAG 1 cut(s) 1107
BstDSI CCRYGG 1 cut(s) 851
BstF5I GGATG 3 cut(s) 508, 583, 943
BstFNI CGCG 1 cut(s) 928
BstKTI GATC 6 cut(s) 155, 442, 537, 747, 798, 1035
BstMAI GTCTC 3 cut(s) 83, 893, 1101
BstMBI GATC 6 cut(s) 152, 439, 534, 744, 795, 1032
BstMWI GCNNNNNNNGC 3 cut(s) 56, 98, 503
BstNI CCWGG 1 cut(s) 1085
BstNSI RCATGY 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 1083
BstUI CGCG 1 cut(s) 928
BstV1I GCAGC 1 cut(s) 701
BstV2I GAAGAC 2 cut(s) 234, 777
BsuI GTATCC 2 cut(s) 438, 620
BsuRI GGCC 3 cut(s) 5, 67, 200
BtgI CCRYGG 1 cut(s) 851
BtsCI GGATG 3 cut(s) 508, 583, 943
BtsIMutI CAGTG 4 cut(s) 375, 497, 1053, 1062
CaiI CAGNNNCTG 1 cut(s) 976
CciI TCATGA 2 cut(s) 552, 891
Cfr10I RCCGGY 1 cut(s) 365
Cfr13I GGNCC 4 cut(s) 198, 848, 940, 997
CseI GACGC 1 cut(s) 815
CspCI CAANNNNNGTGG 2 cut(s) 551, 586
CviAII CATG 6 cut(s) 98, 361, 553, 718, 852, 892
CviJI RGCY 9 cut(s) 5, 67, 166, 200, 369, 400, 636, 667, 1024
CviKI_1 RGCY 9 cut(s) 5, 67, 166, 200, 369, 400, 636, 667, 1024
DdeI CTNAG 1 cut(s) 1107
DpnI GATC 6 cut(s) 154, 441, 536, 746, 797, 1034
DpnII GATC 6 cut(s) 152, 439, 534, 744, 795, 1032
DraIII CACNNNGTG 1 cut(s) 413
DriI GACNNNNNGTC 1 cut(s) 126
Eam1105I GACNNNNNGTC 1 cut(s) 126
EciI GGCGGA 1 cut(s) 590
Ecl136II GAGCTC 1 cut(s) 166
Eco130I CCWWGG 2 cut(s) 349, 851
Eco147I AGGCCT 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 168
Eco47I GGWCC 3 cut(s) 848, 940, 997
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 4 cut(s) 101, 192, 669, 920
EcoICRI GAGCTC 1 cut(s) 166
EcoO109I RGGNCCY 1 cut(s) 997
EcoRII CCWGG 1 cut(s) 1083
EcoT14I CCWWGG 2 cut(s) 349, 851
EcoT38I GRGCYC 1 cut(s) 168
ErhI CCWWGG 2 cut(s) 349, 851
Esp3I CGTCTC 2 cut(s) 83, 893
FaeI CATG 6 cut(s) 101, 364, 556, 721, 855, 895
FatI CATG 6 cut(s) 97, 360, 552, 717, 851, 891
FauNDI CATATG 1 cut(s) 832
FblI GTMKAC 1 cut(s) 1072
Fnu4HI GCNGC 1 cut(s) 690
FokI GGATG 3 cut(s) 515, 590, 930
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 690
FspBI CTAG 3 cut(s) 510, 701, 1007
GluI GCNGC 1 cut(s) 690
HaeIII GGCC 3 cut(s) 5, 67, 200
HapII CCGG 2 cut(s) 366, 545
HgaI GACGC 1 cut(s) 815
Hin1II CATG 6 cut(s) 101, 364, 556, 721, 855, 895
HinfI GANTC 3 cut(s) 541, 556, 725
HpaII CCGG 2 cut(s) 366, 545
HphI GGTGA 2 cut(s) 260, 720
Hpy166II GTNNAC 4 cut(s) 706, 877, 1053, 1073
Hpy188I TCNGA 3 cut(s) 120, 649, 805
Hpy188III TCNNGA 7 cut(s) 284, 463, 530, 538, 553, 892, 995
Hpy8I GTNNAC 4 cut(s) 706, 877, 1053, 1073
Hpy99I CGWCG 2 cut(s) 482, 752
HpyAV CCTTC 2 cut(s) 16, 484
HpyCH4III ACNGT 7 cut(s) 36, 254, 329, 379, 887, 959, 1116
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 98, 503
HpyF3I CTNAG 1 cut(s) 1107
Hsp92II CATG 6 cut(s) 101, 364, 556, 721, 855, 895
Kzo9I GATC 6 cut(s) 152, 439, 534, 744, 795, 1032
LmnI GCTCC 2 cut(s) 171, 187
Lsp1109I GCAGC 1 cut(s) 701
LweI GCATC 1 cut(s) 493
MaeI CTAG 3 cut(s) 510, 701, 1007
MaeIII GTNAC 2 cut(s) 266, 754
MalI GATC 6 cut(s) 154, 441, 536, 746, 797, 1034
MboI GATC 6 cut(s) 152, 439, 534, 744, 795, 1032
MboII GAAGA 9 cut(s) 8, 185, 234, 364, 605, 628, 662, 782, 926
MfeI CAATTG 1 cut(s) 864
MhlI GDGCHC 2 cut(s) 168, 922
MluCI AATT 9 cut(s) 52, 458, 587, 599, 734, 837, 864, 1078, 1088
MlyI GAGTC 1 cut(s) 719
MnlI CCTC 8 cut(s) 70, 143, 189, 199, 202, 327, 417, 1116
MseI TTAA 4 cut(s) 279, 659, 825, 990
MslI CAYNNNNRTG 1 cut(s) 273
MspI CCGG 2 cut(s) 366, 545
MspR9I CCNGG 1 cut(s) 1085
MunI CAATTG 1 cut(s) 864
MvaI CCWGG 1 cut(s) 1085
MvnI CGCG 1 cut(s) 928
MwoI GCNNNNNNNGC 3 cut(s) 56, 98, 503
NcoI CCATGG 1 cut(s) 851
NdeI CATATG 1 cut(s) 832
NdeII GATC 6 cut(s) 152, 439, 534, 744, 795, 1032
NlaIII CATG 6 cut(s) 101, 364, 556, 721, 855, 895
NlaIV GGNNCC 1 cut(s) 999
NmuCI GTSAC 2 cut(s) 266, 754
NspI RCATGY 1 cut(s) 101
PagI TCATGA 2 cut(s) 552, 891
PceI AGGCCT 1 cut(s) 67
PfeI GAWTC 2 cut(s) 541, 556
PflFI GACNNNGTC 1 cut(s) 752
PkrI GCNGC 1 cut(s) 691
PleI GAGTC 1 cut(s) 719
PpsI GAGTC 1 cut(s) 719
PpuMI RGGWCCY 1 cut(s) 997
Psp124BI GAGCTC 1 cut(s) 168
Psp5II RGGWCCY 1 cut(s) 997
Psp6I CCWGG 1 cut(s) 1083
PspGI CCWGG 1 cut(s) 1083
PspN4I GGNNCC 1 cut(s) 999
PspPI GGNCC 4 cut(s) 198, 848, 940, 997
PspPPI RGGWCCY 1 cut(s) 997
PstNI CAGNNNCTG 1 cut(s) 976
PsyI GACNNNGTC 1 cut(s) 752
RseI CAYNNNNRTG 1 cut(s) 273
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 4 cut(s) 279, 659, 825, 990
SatI GCNGC 1 cut(s) 690
Sau3AI GATC 6 cut(s) 152, 439, 534, 744, 795, 1032
Sau96I GGNCC 4 cut(s) 198, 848, 940, 997
SchI GAGTC 1 cut(s) 719
ScrFI CCNGG 1 cut(s) 1085
SduI GDGCHC 2 cut(s) 168, 922
SetI ASST 8 cut(s) 141, 168, 402, 428, 476, 511, 942, 1008
SfaNI GCATC 1 cut(s) 493
SinI GGWCC 3 cut(s) 848, 940, 997
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
Sse9I AATT 9 cut(s) 52, 458, 587, 599, 734, 837, 864, 1078, 1088
SseBI AGGCCT 1 cut(s) 67
SsiI CCGC 1 cut(s) 575
SspI AATATT 1 cut(s) 672
SspMI CTAG 3 cut(s) 510, 701, 1007
SstI GAGCTC 1 cut(s) 168
StuI AGGCCT 1 cut(s) 67
StyD4I CCNGG 1 cut(s) 1083
StyI CCWWGG 2 cut(s) 349, 851
TaaI ACNGT 7 cut(s) 36, 254, 329, 379, 887, 959, 1116
TaqI TCGA 4 cut(s) 285, 477, 491, 747
TasI AATT 9 cut(s) 52, 458, 587, 599, 734, 837, 864, 1078, 1088
TfiI GAWTC 2 cut(s) 541, 556
Tru1I TTAA 4 cut(s) 279, 659, 825, 990
Tru9I TTAA 4 cut(s) 279, 659, 825, 990
TscAI CASTG 4 cut(s) 382, 504, 1060, 1069
TseFI GTSAC 2 cut(s) 266, 754
TseI GCWGC 1 cut(s) 689
Tsp45I GTSAC 2 cut(s) 266, 754
TspDTI ATGAA 4 cut(s) 357, 371, 541, 569
TspGWI ACGGA 1 cut(s) 174
TspRI CASTG 4 cut(s) 382, 504, 1060, 1069
Tth111I GACNNNGTC 1 cut(s) 752
VpaK11BI GGWCC 3 cut(s) 848, 940, 997
XapI RAATTY 3 cut(s) 458, 587, 599
XceI RCATGY 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 1072
XspI CTAG 3 cut(s) 510, 701, 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.