Rh7AG056900

glycerophosphoryl diester phosphodiesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0007756
Physical Location & Seq
Reverse (-)
3902239 .. 3904990
2752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG056900.1

Sequence Viewer

Length: 999 bp
ATGGCATTCTTGCAGAGAGCAATTGAAGAGGGTGCAGACTTCATTGAAACAGATATTCTATCTTCTAAAGATGGTGTCCTTATATGCTTTCATGATGTGACCCTCGATGCCACAACTGATATTGCAAAGCATACGGAATTTGCAGATCGCAAACGGACCTATGACGTTCAAGGGGTCAACACCACTGGTTTTTTCATTGTTGATTTTACACTTAAAGAACTGAAGACATTACGAGTGAAGCAGAGATACCCATTTCGTGATCAACAATATAATGGAAAATTTCCTATTATTACTTTTGAGGAGTTTATTTCAATCGCACTGGATGCACCCAGAGTTGTTGGCATATATCCGGAGATTAAGAATCCTGTATTGATCAACCAACATGTAAAGTGGTCAAATGGTAAGAGATTCGAGGACAAGTTTGTGGAGACACTTAAAAAGTACGGATACAAGGGTTCATATATGTCGAAAGATTGGCTGAAACAACCTGCATTTATCCAGTCATTTGCTCCAACTTCACTTGTTTATGTATCAAATCTGACAGACTTGCCCAAGATCTTTTTGATTGACGATATCACAATTCCTACTCAAGACACTAATCAGTCGTATTGGGAAATTACTTCAGACAGCTACCTTAGCTACATTAAGGAGTATGTGGTAGGCATTGGACCTTGGAAGGATACTGTGGTTCCTGTAGTAAATAATTATTTGCAAACACCTACAGACCTGGTCCCCATGGCTCATGCACATAACCTACAGGTGCACCCCTATACATTCAGGAATGAGAACTCCTTCCTGCACTTTGACTTTCATCAAGATCCGTATCAAGAGTACGGGTACTGGCTTAATAAGATAGGTGTTGATGGACTCTTTACAGACTTCACAGGCAGCCTGCATAATTATCAAGAATGGACCTCTTTTAATCAAAGTGATAACAGTAATGCATCAAAGCTATTGCATAAAATAGCATTGCTGGTCTCTTCCTATACAAAGGCATGA

Protein Analysis

332

Amino Acids

38.42

Weight (kDa)

5.68

Isoelectric Point (pI)

31.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDPD PF03009 3 - 296 8.4e-49 Glycerophosphoryl diester phosphodiesterase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 496
AccIII TCCGGA 1 cut(s) 349
AclWI GGATC 1 cut(s) 812
AcsI RAATTY 2 cut(s) 137, 278
AcuI CTGAAG 2 cut(s) 242, 606
AfaI GTAC 3 cut(s) 443, 833, 839
AflIII ACRYGT 1 cut(s) 382
AgsI TTSAA 4 cut(s) 26, 47, 170, 312
AjnI CCWGG 1 cut(s) 726
AluBI AGCT 3 cut(s) 630, 639, 952
AluI AGCT 3 cut(s) 630, 639, 952
Alw21I GWGCWC 1 cut(s) 765
Alw26I GTCTC 2 cut(s) 422, 982
Alw44I GTGCAC 1 cut(s) 761
AlwI GGATC 1 cut(s) 812
Aor13HI TCCGGA 1 cut(s) 349
ApaLI GTGCAC 1 cut(s) 761
ApeKI GCWGC 1 cut(s) 888
ApoI RAATTY 2 cut(s) 137, 278
Asp700I GAANNNNTTC 1 cut(s) 791
AspS9I GGNCC 4 cut(s) 156, 668, 730, 912
AvaII GGWCC 4 cut(s) 156, 668, 730, 912
BaeGI GKGCMC 1 cut(s) 765
BaeI ACNNNNGTAYC 4 cut(s) 439, 472, 672, 705
BarI GAAGNNNNNNTAC 2 cut(s) 230, 262
BbsI GAAGAC 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 765
BbvI GCAGC 1 cut(s) 900
BccI CCATC 2 cut(s) 65, 857
BciT130I CCWGG 1 cut(s) 728
BciVI GTATCC 2 cut(s) 440, 673
BclI TGATCA 2 cut(s) 259, 372
BcoDI GTCTC 2 cut(s) 422, 982
BfmI CTRYAG 3 cut(s) 693, 720, 755
BfuAI ACCTGC 1 cut(s) 496
BfuI GTATCC 2 cut(s) 440, 673
BglII AGATCT 1 cut(s) 555
BisI GCNGC 1 cut(s) 889
BlsI GCNGC 1 cut(s) 890
Bme1390I CCNGG 1 cut(s) 728
Bme18I GGWCC 4 cut(s) 156, 668, 730, 912
BmgT120I GGNCC 4 cut(s) 156, 668, 730, 912
BmiI GGNNCC 2 cut(s) 690, 732
BmrFI CCNGG 1 cut(s) 728
BmsI GCATC 3 cut(s) 97, 313, 953
BpiI GAAGAC 1 cut(s) 230
Bpu10I CCTNAGC 1 cut(s) 635
BpuEI CTTGAG 1 cut(s) 573
BsaBI GATNNNNATC 1 cut(s) 822
BsaI GGTCTC 1 cut(s) 982
BsaJI CCNNGG 2 cut(s) 671, 735
BsaWI WCCGGW 1 cut(s) 349
Bse1I ACTGG 4 cut(s) 190, 324, 499, 845
Bse3DI GCAATG 1 cut(s) 968
Bse8I GATNNNNATC 1 cut(s) 822
BseAI TCCGGA 1 cut(s) 349
BseBI CCWGG 1 cut(s) 728
BseDI CCNNGG 2 cut(s) 671, 735
BseGI GGATG 1 cut(s) 328
BseJI GATNNNNATC 1 cut(s) 822
BseMI GCAATG 1 cut(s) 968
BseNI ACTGG 4 cut(s) 190, 324, 499, 845
BseRI GAGGAG 1 cut(s) 314
BseSI GKGCMC 1 cut(s) 765
BseXI GCAGC 1 cut(s) 900
BsgI GTGCAG 2 cut(s) 54, 782
BsiHKAI GWGCWC 1 cut(s) 765
BsiSI CCGG 1 cut(s) 350
BslFI GGGAC 1 cut(s) 716
BsmAI GTCTC 2 cut(s) 422, 982
BsmFI GGGAC 1 cut(s) 716
BsmI GAATGC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 982
Bsp1286I GDGCHC 1 cut(s) 765
Bsp13I TCCGGA 1 cut(s) 349
Bsp143I GATC 5 cut(s) 145, 259, 372, 555, 817
Bsp19I CCATGG 1 cut(s) 735
BspEI TCCGGA 1 cut(s) 349
BspHI TCATGA 1 cut(s) 91
BspLI GGNNCC 2 cut(s) 690, 732
BspMI ACCTGC 1 cut(s) 496
BspPI GGATC 1 cut(s) 812
BspTNI GGTCTC 1 cut(s) 982
BsrDI GCAATG 1 cut(s) 968
BsrI ACTGG 4 cut(s) 190, 324, 499, 845
BssECI CCNNGG 2 cut(s) 671, 735
BssMI GATC 5 cut(s) 145, 259, 372, 555, 817
BssT1I CCWWGG 2 cut(s) 671, 735
Bst2UI CCWGG 1 cut(s) 728
Bst4CI ACNGT 2 cut(s) 685, 938
Bst6I CTCTTC 2 cut(s) 21, 985
BstAPI GCANNNNNTGC 1 cut(s) 323
BstC8I GCNNGC 1 cut(s) 893
BstDEI CTNAG 1 cut(s) 635
BstDSI CCRYGG 1 cut(s) 735
BstF5I GGATG 1 cut(s) 328
BstKTI GATC 5 cut(s) 148, 262, 375, 558, 820
BstMAI GTCTC 2 cut(s) 422, 982
BstMBI GATC 5 cut(s) 145, 259, 372, 555, 817
BstMWI GCNNNNNNNGC 2 cut(s) 323, 636
BstNI CCWGG 1 cut(s) 728
BstNSI RCATGY 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 726
BstSFI CTRYAG 3 cut(s) 693, 720, 755
BstSLI GKGCMC 1 cut(s) 765
BstV1I GCAGC 1 cut(s) 900
BstV2I GAAGAC 1 cut(s) 230
BstX2I RGATCY 2 cut(s) 555, 817
BstYI RGATCY 2 cut(s) 555, 817
BsuI GTATCC 2 cut(s) 440, 673
BtgI CCRYGG 1 cut(s) 735
BtsCI GGATG 1 cut(s) 328
BtsIMutI CAGTG 2 cut(s) 183, 317
BveI ACCTGC 1 cut(s) 496
Cac8I GCNNGC 1 cut(s) 893
CciI TCATGA 1 cut(s) 91
Cfr13I GGNCC 4 cut(s) 156, 668, 730, 912
CsiI ACCWGGT 1 cut(s) 726
Csp6I GTAC 3 cut(s) 442, 832, 838
CviAII CATG 5 cut(s) 92, 383, 736, 743, 996
CviJI RGCY 7 cut(s) 478, 630, 639, 740, 844, 891, 952
CviKI_1 RGCY 7 cut(s) 478, 630, 639, 740, 844, 891, 952
CviQI GTAC 3 cut(s) 442, 832, 838
DdeI CTNAG 1 cut(s) 635
DpnI GATC 5 cut(s) 147, 261, 374, 557, 819
DpnII GATC 5 cut(s) 145, 259, 372, 555, 817
Eam1104I CTCTTC 2 cut(s) 21, 985
EarI CTCTTC 2 cut(s) 21, 985
Eco130I CCWWGG 2 cut(s) 671, 735
Eco31I GGTCTC 1 cut(s) 982
Eco32I GATATC 1 cut(s) 574
Eco47I GGWCC 4 cut(s) 156, 668, 730, 912
Eco57I CTGAAG 2 cut(s) 242, 606
EcoRII CCWGG 1 cut(s) 726
EcoRV GATATC 1 cut(s) 574
EcoT14I CCWWGG 2 cut(s) 671, 735
EcoT22I ATGCAT 1 cut(s) 946
ErhI CCWWGG 2 cut(s) 671, 735
FaeI CATG 5 cut(s) 95, 386, 739, 746, 999
FaqI GGGAC 1 cut(s) 716
FatI CATG 5 cut(s) 91, 382, 735, 742, 995
FbaI TGATCA 2 cut(s) 259, 372
Fnu4HI GCNGC 1 cut(s) 889
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 1 cut(s) 889
GluI GCNGC 1 cut(s) 889
HapII CCGG 1 cut(s) 350
Hin1II CATG 5 cut(s) 95, 386, 739, 746, 999
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HinfI GANTC 3 cut(s) 361, 408, 867
HpaII CCGG 1 cut(s) 350
Hpy166II GTNNAC 2 cut(s) 178, 763
Hpy188I TCNGA 2 cut(s) 540, 625
Hpy188III TCNNGA 8 cut(s) 92, 257, 350, 590, 778, 815, 827, 905
Hpy8I GTNNAC 2 cut(s) 178, 763
HpyAV CCTTC 2 cut(s) 670, 802
HpyCH4III ACNGT 2 cut(s) 685, 938
HpyCH4IV ACGT 1 cut(s) 165
HpyF10VI GCNNNNNNNGC 2 cut(s) 323, 636
HpyF3I CTNAG 1 cut(s) 635
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 5 cut(s) 95, 386, 739, 746, 999
Kpn2I TCCGGA 1 cut(s) 349
Ksp22I TGATCA 2 cut(s) 259, 372
Kzo9I GATC 5 cut(s) 145, 259, 372, 555, 817
LmnI GCTCC 1 cut(s) 514
Lsp1109I GCAGC 1 cut(s) 900
LweI GCATC 3 cut(s) 97, 313, 953
MabI ACCWGGT 1 cut(s) 726
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 97
MalI GATC 5 cut(s) 147, 261, 374, 557, 819
MboI GATC 5 cut(s) 145, 259, 372, 555, 817
MboII GAAGA 4 cut(s) 38, 54, 235, 972
MfeI CAATTG 1 cut(s) 21
MflI RGATCY 2 cut(s) 555, 817
MhlI GDGCHC 1 cut(s) 765
MluCI AATT 7 cut(s) 21, 137, 278, 579, 615, 703, 898
MlyI GAGTC 1 cut(s) 861
MmeI TCCRAC 1 cut(s) 536
MnlI CCTC 5 cut(s) 22, 113, 292, 406, 925
Mph1103I ATGCAT 1 cut(s) 946
MroI TCCGGA 1 cut(s) 349
MroXI GAANNNNTTC 1 cut(s) 791
MseI TTAA 6 cut(s) 213, 357, 435, 645, 846, 921
MspI CCGG 1 cut(s) 350
MspR9I CCNGG 1 cut(s) 728
MunI CAATTG 1 cut(s) 21
Mva1269I GAATGC 1 cut(s) 5
MvaI CCWGG 1 cut(s) 728
MwoI GCNNNNNNNGC 2 cut(s) 323, 636
NcoI CCATGG 1 cut(s) 735
NdeII GATC 5 cut(s) 145, 259, 372, 555, 817
NlaIII CATG 5 cut(s) 95, 386, 739, 746, 999
NlaIV GGNNCC 2 cut(s) 690, 732
NmuCI GTSAC 1 cut(s) 97
NsiI ATGCAT 1 cut(s) 946
NspI RCATGY 1 cut(s) 386
PagI TCATGA 1 cut(s) 91
PciI ACATGT 1 cut(s) 382
PctI GAATGC 1 cut(s) 5
PdmI GAANNNNTTC 1 cut(s) 791
PfeI GAWTC 2 cut(s) 361, 408
PflFI GACNNNGTC 1 cut(s) 728
PkrI GCNGC 1 cut(s) 890
PleI GAGTC 1 cut(s) 861
PpsI GAGTC 1 cut(s) 861
PscI ACATGT 1 cut(s) 382
Psp6I CCWGG 1 cut(s) 726
PspGI CCWGG 1 cut(s) 726
PspN4I GGNNCC 2 cut(s) 690, 732
PspPI GGNCC 4 cut(s) 156, 668, 730, 912
PsuI RGATCY 2 cut(s) 555, 817
PsyI GACNNNGTC 1 cut(s) 728
RsaI GTAC 3 cut(s) 443, 833, 839
RsaNI GTAC 3 cut(s) 442, 832, 838
SaqAI TTAA 6 cut(s) 213, 357, 435, 645, 846, 921
SatI GCNGC 1 cut(s) 889
Sau3AI GATC 5 cut(s) 145, 259, 372, 555, 817
Sau96I GGNCC 4 cut(s) 156, 668, 730, 912
SchI GAGTC 1 cut(s) 861
ScrFI CCNGG 1 cut(s) 728
SduI GDGCHC 1 cut(s) 765
SexAI ACCWGGT 1 cut(s) 726
SfaNI GCATC 3 cut(s) 97, 313, 953
SfcI CTRYAG 3 cut(s) 693, 720, 755
SinI GGWCC 4 cut(s) 156, 668, 730, 912
SmlI CTYRAG 1 cut(s) 588
SmoI CTYRAG 1 cut(s) 588
Sse9I AATT 7 cut(s) 21, 137, 278, 579, 615, 703, 898
StyD4I CCNGG 1 cut(s) 726
StyI CCWWGG 2 cut(s) 671, 735
TaaI ACNGT 2 cut(s) 685, 938
TaiI ACGT 1 cut(s) 168
TaqI TCGA 3 cut(s) 105, 411, 467
TasI AATT 7 cut(s) 21, 137, 278, 579, 615, 703, 898
TfiI GAWTC 2 cut(s) 361, 408
Tru1I TTAA 6 cut(s) 213, 357, 435, 645, 846, 921
Tru9I TTAA 6 cut(s) 213, 357, 435, 645, 846, 921
TscAI CASTG 2 cut(s) 190, 324
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 1 cut(s) 888
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 5 cut(s) 31, 80, 184, 447, 800
TspGWI ACGGA 4 cut(s) 149, 169, 459, 810
TspRI CASTG 2 cut(s) 190, 324
Tth111I GACNNNGTC 1 cut(s) 728
VneI GTGCAC 1 cut(s) 761
VpaK11BI GGWCC 4 cut(s) 156, 668, 730, 912
XapI RAATTY 2 cut(s) 137, 278
XceI RCATGY 1 cut(s) 386
XmnI GAANNNNTTC 1 cut(s) 791
Zsp2I ATGCAT 1 cut(s) 946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.