Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007756

Physical Location & Seq

Genomic Coordinates Reverse (-)

16447900 .. 16451721

Gene Structure 3822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G205800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGTTTTTGCATTTGACAGGTTTTGCTCCTTTTGTGTTCCTACTGCTCCTTGTTGGGTGTTCCGCTTCCGGGAGGCCATTTTATCCACTTCCTAGTAAATTAGCTGATGGCGATAGACAGCCTCTGCAAACTTCTCGACCATACAACATTGCTCATCGAGGTTCAAACGGAGAGATTCCTGAAGAAACTGCTGCTGCATACATGAGAGCTATTGAAGAGGGTGCAGACTTCATTGAAACAGATATCCTATCTTCTAAAGATGGTGTTCTCATATGTTTTCATGATGTGACCCTTGATAAGACAACTGATGTTGCAGAACACAAAGAATTTTCAAATCGTAAAAGGACCTATGAGGTTCAAGGGGTCAACACTACTGGTTTTTTCACTGTTGATTTTACACTAGAAGAACTGAAGTCATTACGAGTGAAGCAGAGGTATCCATTTCGGGATCAACAATATAATGGAAAATATACTATTATTACTTTTGAAGAGTTCATTGCAATCGCATTGGACGCACCCAGGGTCGTTGGAATATATCCAGAGATTAAAAATCCAGTATTGATCAACCAGCATGTGAAGTGGGCAGATGGCAAGAGATTTGAGGACAGGTTTGTGGAGACACTTAAGAAGTACGGATACAAGGGTTCATACATGTCAAAAGATTGGTTAAAACAACCTGCATTTATCCAGTCATTCGCTCCAACTTCGCTTATATACGTATCAAATCTGACAGACTTGCCCAAGATCTTCTTAATTGATGATGTCACAGTTCCAACTCAAGACACTAATCAGTCCTATTGGGAAATTACTTCCGATGCCTACCTCGACTTCATTAAAGATTATGTGGTGGGCATTGGACCATGGAAGGATACTGTGGTTCCTGTAGTAAACAATTATTTGCAAACACCTACTGATCTGGTCTCCAGAGCCCATGCTCATGACCTACAGGTGCACCCATATACATACCGAAATGAGAACTCGTTCCTGCACTTTAACTTTCATCAAGATCCGTATGCGGAGTACGATTATTGGATTAATGAGATAGGTGTTGATGGACTTTTTACAGACTTTACAGGCAGCCTGCATAATTATCAAGAGTGGAGCTCCTCTAAGGAAGGTGATGAGAAGAATGCATCAAACTTACTGCATAAAATAGCGTCAATGGTCTCTTCCTATGGAAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005575 GO:0005623 GO:0008081 GO:0008889 GO:0016787 GO:0016788 GO:0042578 GO:0042597 GO:0043167 GO:0043169 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

GDPD

Protein Analysis

396

Amino Acids

45.24

Weight (kDa)

5.32

Isoelectric Point (pI)

34.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74210 AT5G08030 AT5G08030
fragaria_vesca	FvH4_5g13770 FvH4_5g13770 FvH4_5g13770
malus_domestica	MD06G1225600.v1.1 MD14G1212500.v1.1
prunus_persica	Prupe.5G205800_v2.0.a1 Prupe.5G205800_v2.0.a1 Prupe.5G205800_v2.0.a1
pyrus_communis	pycom06g18010
rosa_chinensis	RchiOBHm_Chr7g0183171
rosa_laevigata	RLG00000005070
rosa_multiflora	Rmu_ssc0000111.1_g000016
rosa_roxburghii	Rroxscaffold_3G00270690
rosa_rugosa	Rorug06G0454600 Rorug06G0454600
rosa_samantha	Rh7AG056900 Rh7BG056600 Rh7CG057600 Rh7CG057700 Rh7DG056500
rosa_wichuraiana	Rw7G004640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	685
AciI	CCGC	2 cut(s)	63, 1016
AclWI	GGATC	2 cut(s)	456, 1001
AcsI	RAATTY	1 cut(s)	326
AcuI	CTGAAG	2 cut(s)	201, 431
AfaI	GTAC	2 cut(s)	632, 1022
AfiI	CCNNNNNNNGG	1 cut(s)	69
AflII	CTTAAG	1 cut(s)	623
AflIII	ACRYGT	1 cut(s)	651
AgsI	TTSAA	6 cut(s)	165, 215, 236, 333, 359, 488
AjnI	CCWGG	1 cut(s)	518
AluBI	AGCT	3 cut(s)	104, 209, 1104
AluI	AGCT	3 cut(s)	104, 209, 1104
Alw21I	GWGCWC	2 cut(s)	954, 1106
Alw26I	GTCTC	3 cut(s)	611, 925, 1171
Alw44I	GTGCAC	1 cut(s)	950
AlwI	GGATC	2 cut(s)	456, 1001
AlwNI	CAGNNNCTG	1 cut(s)	124
AoxI	GGCC	1 cut(s)	74
ApaLI	GTGCAC	1 cut(s)	950
ApeKI	GCWGC	3 cut(s)	191, 194, 1077
ApoI	RAATTY	1 cut(s)	326
AseI	ATTAAT	1 cut(s)	1035
Asp700I	GAANNNNTTC	1 cut(s)	980
AspS9I	GGNCC	2 cut(s)	345, 857
AsuC2I	CCSGG	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	1130
AvaII	GGWCC	2 cut(s)	345, 857
BaeGI	GKGCMC	1 cut(s)	954
BaeI	ACNNNNGTAYC	4 cut(s)	628, 661, 861, 894
BanII	GRGCYC	2 cut(s)	931, 1106
BarI	GAAGNNNNNNTAC	2 cut(s)	620, 652
Bbv12I	GWGCWC	2 cut(s)	954, 1106
BbvI	GCAGC	3 cut(s)	178, 181, 1089
BccI	CCATC	4 cut(s)	101, 254, 581, 1046
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BciT130I	CCWGG	1 cut(s)	520
BciVI	GTATCC	3 cut(s)	447, 629, 862
BclI	TGATCA	1 cut(s)	561
BcnI	CCSGG	1 cut(s)	70
BcoDI	GTCTC	3 cut(s)	611, 925, 1171
BfaI	CTAG	2 cut(s)	93, 401
BfmI	CTRYAG	2 cut(s)	882, 944
BfrI	CTTAAG	1 cut(s)	623
BfuAI	ACCTGC	1 cut(s)	685
BfuI	GTATCC	3 cut(s)	447, 629, 862
BglII	AGATCT	1 cut(s)	744
BisI	GCNGC	3 cut(s)	192, 195, 1078
BlsI	GCNGC	3 cut(s)	193, 196, 1079
Bme1390I	CCNGG	2 cut(s)	70, 520
Bme18I	GGWCC	2 cut(s)	345, 857
BmgT120I	GGNCC	2 cut(s)	345, 857
BmiI	GGNNCC	1 cut(s)	879
BmrFI	CCNGG	2 cut(s)	70, 520
BmsI	GCATC	2 cut(s)	805, 1142
BplI	GAGNNNNNCTC	2 cut(s)	1088, 1120
BpmI	CTGGAG	1 cut(s)	907
BpuEI	CTTGAG	1 cut(s)	762
BpuMI	CCSGG	1 cut(s)	70
BsaAI	YACGTR	1 cut(s)	718
BsaI	GGTCTC	2 cut(s)	925, 1171
BsaJI	CCNNGG	3 cut(s)	518, 519, 860
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse1I	ACTGG	3 cut(s)	379, 554, 688
Bse3DI	GCAATG	2 cut(s)	147, 495
BseBI	CCWGG	1 cut(s)	520
BseDI	CCNNGG	3 cut(s)	518, 519, 860
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMI	GCAATG	2 cut(s)	147, 495
BseNI	ACTGG	3 cut(s)	379, 554, 688
BseRI	GAGGAG	1 cut(s)	1096
BseSI	GKGCMC	1 cut(s)	954
BseXI	GCAGC	3 cut(s)	178, 181, 1089
BsgI	GTGCAG	2 cut(s)	243, 971
BshFI	GGCC	1 cut(s)	76
BsiHKAI	GWGCWC	2 cut(s)	954, 1106
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmAI	GTCTC	3 cut(s)	611, 925, 1171
BsmI	GAATGC	1 cut(s)	1135
BsnI	GGCC	1 cut(s)	76
Bso31I	GGTCTC	2 cut(s)	925, 1171
Bsp1286I	GDGCHC	3 cut(s)	931, 954, 1106
Bsp143I	GATC	5 cut(s)	448, 561, 744, 913, 1006
Bsp19I	CCATGG	1 cut(s)	860
BspACI	CCGC	2 cut(s)	63, 1016
BspANI	GGCC	1 cut(s)	76
BspHI	TCATGA	2 cut(s)	280, 937
BspLI	GGNNCC	1 cut(s)	879
BspMI	ACCTGC	1 cut(s)	685
BspPI	GGATC	2 cut(s)	456, 1001
BspTI	CTTAAG	1 cut(s)	623
BspTNI	GGTCTC	2 cut(s)	925, 1171
BsrDI	GCAATG	2 cut(s)	147, 495
BsrI	ACTGG	3 cut(s)	379, 554, 688
BssECI	CCNNGG	3 cut(s)	518, 519, 860
BssMI	GATC	5 cut(s)	448, 561, 744, 913, 1006
BssT1I	CCWWGG	1 cut(s)	860
Bst2UI	CCWGG	1 cut(s)	520
Bst4CI	ACNGT	3 cut(s)	388, 769, 874
Bst6I	CTCTTC	3 cut(s)	210, 483, 1174
BstAFI	CTTAAG	1 cut(s)	623
BstBAI	YACGTR	1 cut(s)	718
BstC8I	GCNNGC	1 cut(s)	1082
BstDEI	CTNAG	1 cut(s)	1110
BstDSI	CCRYGG	1 cut(s)	860
BstKTI	GATC	5 cut(s)	451, 564, 747, 916, 1009
BstMAI	GTCTC	3 cut(s)	611, 925, 1171
BstMBI	GATC	5 cut(s)	448, 561, 744, 913, 1006
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstNI	CCWGG	1 cut(s)	520
BstNSI	RCATGY	2 cut(s)	575, 655
BstSCI	CCNGG	2 cut(s)	68, 518
BstSFI	CTRYAG	2 cut(s)	882, 944
BstSLI	GKGCMC	1 cut(s)	954
BstSNI	TACGTA	1 cut(s)	718
BstV1I	GCAGC	3 cut(s)	178, 181, 1089
BstX2I	RGATCY	2 cut(s)	744, 1006
BstYI	RGATCY	2 cut(s)	744, 1006
BsuI	GTATCC	3 cut(s)	447, 629, 862
BsuRI	GGCC	1 cut(s)	76
BtgI	CCRYGG	1 cut(s)	860
BtsIMutI	CAGTG	1 cut(s)	384
BveI	ACCTGC	1 cut(s)	685
Cac8I	GCNNGC	1 cut(s)	1082
CaiI	CAGNNNCTG	1 cut(s)	124
CciI	TCATGA	2 cut(s)	280, 937
Cfr13I	GGNCC	2 cut(s)	345, 857
CseI	GACGC	2 cut(s)	521, 1146
Csp6I	GTAC	2 cut(s)	631, 1021
CviAII	CATG	8 cut(s)	202, 281, 572, 652, 861, 932, 938, 1185
CviJI	RGCY	7 cut(s)	76, 104, 121, 209, 929, 1080, 1104
CviKI_1	RGCY	7 cut(s)	76, 104, 121, 209, 929, 1080, 1104
CviQI	GTAC	2 cut(s)	631, 1021
DdeI	CTNAG	1 cut(s)	1110
DpnI	GATC	5 cut(s)	450, 563, 746, 915, 1008
DpnII	GATC	5 cut(s)	448, 561, 744, 913, 1006
Eam1104I	CTCTTC	3 cut(s)	210, 483, 1174
EarI	CTCTTC	3 cut(s)	210, 483, 1174
Ecl136II	GAGCTC	1 cut(s)	1104
Eco105I	TACGTA	1 cut(s)	718
Eco130I	CCWWGG	1 cut(s)	860
Eco24I	GRGCYC	2 cut(s)	931, 1106
Eco31I	GGTCTC	2 cut(s)	925, 1171
Eco32I	GATATC	1 cut(s)	244
Eco47I	GGWCC	2 cut(s)	345, 857
Eco53kI	GAGCTC	1 cut(s)	1104
Eco57I	CTGAAG	2 cut(s)	201, 431
EcoICRI	GAGCTC	1 cut(s)	1104
EcoO109I	RGGNCCY	1 cut(s)	345
EcoRII	CCWGG	1 cut(s)	518
EcoRV	GATATC	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	860
EcoT22I	ATGCAT	1 cut(s)	1135
EcoT38I	GRGCYC	2 cut(s)	931, 1106
ErhI	CCWWGG	1 cut(s)	860
FaeI	CATG	8 cut(s)	205, 284, 575, 655, 864, 935, 941, 1188
FalI	AAGNNNNNCTT	2 cut(s)	734, 766
FatI	CATG	8 cut(s)	201, 280, 571, 651, 860, 931, 937, 1184
FauNDI	CATATG	1 cut(s)	272
FbaI	TGATCA	1 cut(s)	561
Fnu4HI	GCNGC	3 cut(s)	192, 195, 1078
FriOI	GRGCYC	2 cut(s)	931, 1106
Fsp4HI	GCNGC	3 cut(s)	192, 195, 1078
FspBI	CTAG	2 cut(s)	93, 401
GluI	GCNGC	3 cut(s)	192, 195, 1078
GsuI	CTGGAG	1 cut(s)	907
HaeIII	GGCC	1 cut(s)	76
HapII	CCGG	1 cut(s)	69
HgaI	GACGC	2 cut(s)	521, 1146
Hin1II	CATG	8 cut(s)	205, 284, 575, 655, 864, 935, 941, 1188
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HinfI	GANTC	1 cut(s)	175
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	1 cut(s)	1130
Hpy166II	GTNNAC	3 cut(s)	367, 889, 952
Hpy188I	TCNGA	2 cut(s)	729, 814
Hpy8I	GTNNAC	3 cut(s)	367, 889, 952
HpyAV	CCTTC	2 cut(s)	859, 1109
HpyCH4III	ACNGT	3 cut(s)	388, 769, 874
HpyCH4IV	ACGT	1 cut(s)	717
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
HpyF3I	CTNAG	1 cut(s)	1110
HpySE526I	ACGT	1 cut(s)	717
Hsp92II	CATG	8 cut(s)	205, 284, 575, 655, 864, 935, 941, 1188
Ksp22I	TGATCA	1 cut(s)	561
Kzo9I	GATC	5 cut(s)	448, 561, 744, 913, 1006
LmnI	GCTCC	5 cut(s)	31, 51, 703, 1101, 1109
Lsp1109I	GCAGC	3 cut(s)	178, 181, 1089
LweI	GCATC	2 cut(s)	805, 1142
MaeI	CTAG	2 cut(s)	93, 401
MaeII	ACGT	1 cut(s)	717
MaeIII	GTNAC	2 cut(s)	286, 763
MalI	GATC	5 cut(s)	450, 563, 746, 915, 1008
MboI	GATC	5 cut(s)	448, 561, 744, 913, 1006
MboII	GAAGA	8 cut(s)	194, 227, 243, 416, 500, 739, 1138, 1161
MflI	RGATCY	2 cut(s)	744, 1006
MhlI	GDGCHC	3 cut(s)	931, 954, 1106
MluCI	AATT	6 cut(s)	98, 326, 753, 804, 892, 1087
MmeI	TCCRAC	3 cut(s)	508, 725, 797
MnlI	CCTC	9 cut(s)	66, 132, 152, 211, 346, 426, 595, 833, 1117
Mph1103I	ATGCAT	1 cut(s)	1135
MroXI	GAANNNNTTC	1 cut(s)	980
MseI	TTAA	7 cut(s)	546, 624, 668, 752, 834, 993, 1035
MslI	CAYNNNNRTG	1 cut(s)	936
MspCI	CTTAAG	1 cut(s)	623
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	2 cut(s)	70, 520
Mva1269I	GAATGC	1 cut(s)	1135
MvaI	CCWGG	1 cut(s)	520
MwoI	GCNNNNNNNGC	1 cut(s)	512
NciI	CCSGG	1 cut(s)	70
NcoI	CCATGG	1 cut(s)	860
NdeI	CATATG	1 cut(s)	272
NdeII	GATC	5 cut(s)	448, 561, 744, 913, 1006
NlaIII	CATG	8 cut(s)	205, 284, 575, 655, 864, 935, 941, 1188
NlaIV	GGNNCC	1 cut(s)	879
NmuCI	GTSAC	2 cut(s)	286, 763
NsiI	ATGCAT	1 cut(s)	1135
NspI	RCATGY	2 cut(s)	575, 655
PagI	TCATGA	2 cut(s)	280, 937
PasI	CCCWGGG	1 cut(s)	519
PciI	ACATGT	1 cut(s)	651
PctI	GAATGC	1 cut(s)	1135
PdmI	GAANNNNTTC	1 cut(s)	980
PfeI	GAWTC	1 cut(s)	175
PfoI	TCCNGGA	1 cut(s)	68
PkrI	GCNGC	3 cut(s)	193, 196, 1079
Ppu21I	YACGTR	1 cut(s)	718
PpuMI	RGGWCCY	1 cut(s)	345
PscI	ACATGT	1 cut(s)	651
PshBI	ATTAAT	1 cut(s)	1035
Psp124BI	GAGCTC	1 cut(s)	1106
Psp5II	RGGWCCY	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	518
PspGI	CCWGG	1 cut(s)	518
PspN4I	GGNNCC	1 cut(s)	879
PspPI	GGNCC	2 cut(s)	345, 857
PspPPI	RGGWCCY	1 cut(s)	345
PstNI	CAGNNNCTG	1 cut(s)	124
PsuI	RGATCY	2 cut(s)	744, 1006
RsaI	GTAC	2 cut(s)	632, 1022
RsaNI	GTAC	2 cut(s)	631, 1021
RseI	CAYNNNNRTG	1 cut(s)	936
SacI	GAGCTC	1 cut(s)	1106
SaqAI	TTAA	7 cut(s)	546, 624, 668, 752, 834, 993, 1035
SatI	GCNGC	3 cut(s)	192, 195, 1078
Sau3AI	GATC	5 cut(s)	448, 561, 744, 913, 1006
Sau96I	GGNCC	2 cut(s)	345, 857
ScrFI	CCNGG	2 cut(s)	70, 520
SduI	GDGCHC	3 cut(s)	931, 954, 1106
SfaNI	GCATC	2 cut(s)	805, 1142
SfcI	CTRYAG	2 cut(s)	882, 944
SinI	GGWCC	2 cut(s)	345, 857
SmiMI	CAYNNNNRTG	1 cut(s)	936
SmlI	CTYRAG	2 cut(s)	623, 777
SmoI	CTYRAG	2 cut(s)	623, 777
SnaBI	TACGTA	1 cut(s)	718
Sse9I	AATT	6 cut(s)	98, 326, 753, 804, 892, 1087
SsiI	CCGC	2 cut(s)	63, 1016
SspMI	CTAG	2 cut(s)	93, 401
SstI	GAGCTC	1 cut(s)	1106
StyD4I	CCNGG	2 cut(s)	68, 518
StyI	CCWWGG	1 cut(s)	860
TaaI	ACNGT	3 cut(s)	388, 769, 874
TaiI	ACGT	1 cut(s)	720
TaqI	TCGA	3 cut(s)	136, 157, 825
TasI	AATT	6 cut(s)	98, 326, 753, 804, 892, 1087
TfiI	GAWTC	1 cut(s)	175
Tru1I	TTAA	7 cut(s)	546, 624, 668, 752, 834, 993, 1035
Tru9I	TTAA	7 cut(s)	546, 624, 668, 752, 834, 993, 1035
TscAI	CASTG	1 cut(s)	391
TseFI	GTSAC	2 cut(s)	286, 763
TseI	GCWGC	3 cut(s)	191, 194, 1077
Tsp45I	GTSAC	2 cut(s)	286, 763
TspDTI	ATGAA	6 cut(s)	220, 269, 484, 636, 820, 989
TspGWI	ACGGA	3 cut(s)	183, 648, 999
TspRI	CASTG	1 cut(s)	391
Vha464I	CTTAAG	1 cut(s)	623
VneI	GTGCAC	1 cut(s)	950
VpaK11BI	GGWCC	2 cut(s)	345, 857
VspI	ATTAAT	1 cut(s)	1035
XapI	RAATTY	1 cut(s)	326
XceI	RCATGY	2 cut(s)	575, 655
XmnI	GAANNNNTTC	1 cut(s)	980
XspI	CTAG	2 cut(s)	93, 401
Zsp2I	ATGCAT	1 cut(s)	1135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.