Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007756

Physical Location & Seq

Genomic Coordinates Forward (+)

7781185 .. 7784378

Gene Structure 3194 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g13770.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGCTGCTTCTCACTGCTTTACTCCTTTTGTATTTCTACTACTCCTTGTTGGGTGTTCAGGAAGGCCATTATATCCACTTCCAAGTAAAATTGCCAATGCATATAGACAGCCTCTACAAACTTCTAGACCATACAACATTGCACATCGAGGATCAAATGGAGAGATTCCTGAAGAAACTGCTGCTGCATACATGAGAGCTATTGAAGAGGGTACAGATTTCATTGAAACAGATATTCTCTCTTCAAAAGATGGAGTTCTAATATGCTTTCATGATGTGACCCTCGATGATACAACTGATATTGCACAGCATAAGGAATTTGCAGATCGCAAACAGACCTATGATGTTCAAGGGGTCAACACCACTGGTTTTTTCACTGTTGATTTTACACTTAAAGAACTGAAGACTTTACGAGTGAAGCAGAGATACGCATTTCGTGATCAACAATACAATGGAAAATTTCCTATCATTACTTTCGAGGAGTTCATTTCAATTGCGCTGGACGCACCCAGAGTTGTTGGCATATATCCTGAGATTAAGAATCCTGTATTGATCAATCAACATGTAAAGTGGTCGGATGGTAAGAGATTTGAGGACAAGTTTGTGGAGACACTTAAAAAGTATGGATACAAGGGTTCATATATGTCGAAAGATTGGCTGAAGAAACCTGCATTTATCCAGTCATTTGCTCCAACTTCACTTGTTTATGTATCAAACCTGACGGACTTGCCCAAGATCTTTTTGATTGACGATATTTCAATCCCTACTCAAGACACTAATCAGTCGTATTGGGAAATTACTTCAGACAGCTACCTTAGCTACATTAAGGATTATGTGGTAGGCATTGGACCTTGGAAAGACACTATTGTTCCTGTAGTAAATAATTATTTGCAAACACCTACAGATCTGGTCTCCAGGGCTCATGCACATAACCTACAGGTACACCCATATACATACAGGAACGAGAACTCCTTCCTGCACTTTGACTTTCATGAAGATCCGTATCAAGAGTATGAGTACTGGCTTAAGGAGATAGGCGTTGATGGACTCTTTACAGACTTTACAGGCAGCCTGCATAAGTATCAAGAATGGACCTCCTTTAATCAAAGTGATTACAATAATGCATCAAAGTTATTGCATCAAATAGCATTGCTGGTCTCTTCCTATACAAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005575 GO:0005623 GO:0008081 GO:0008889 GO:0016787 GO:0016788 GO:0042578 GO:0042597 GO:0043167 GO:0043169 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

GDPD

Protein Analysis

393

Amino Acids

45.18

Weight (kDa)

5.65

Isoelectric Point (pI)

32.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	2 - 292	1e-46	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74210 AT5G08030 AT5G08030
fragaria_vesca	FvH4_5g13770 FvH4_5g13770 FvH4_5g13770
malus_domestica	MD06G1225600.v1.1 MD14G1212500.v1.1
prunus_persica	Prupe.5G205800_v2.0.a1 Prupe.5G205800_v2.0.a1 Prupe.5G205800_v2.0.a1
pyrus_communis	pycom06g18010
rosa_chinensis	RchiOBHm_Chr7g0183171
rosa_laevigata	RLG00000005070
rosa_multiflora	Rmu_ssc0000111.1_g000016
rosa_roxburghii	Rroxscaffold_3G00270690
rosa_rugosa	Rorug06G0454600 Rorug06G0454600
rosa_samantha	Rh7AG056900 Rh7BG056600 Rh7CG057600 Rh7CG057700 Rh7DG056500
rosa_wichuraiana	Rw7G004640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	676
AclWI	GGATC	2 cut(s)	160, 992
AcsI	RAATTY	2 cut(s)	317, 458
AcuI	CTGAAG	4 cut(s)	192, 422, 680, 786
AfaI	GTAC	3 cut(s)	214, 942, 1019
AflII	CTTAAG	1 cut(s)	1025
AflIII	ACRYGT	1 cut(s)	562
AgsI	TTSAA	6 cut(s)	206, 227, 246, 350, 492, 759
AjnI	CCWGG	1 cut(s)	914
AloI	GAACNNNNNNTCC	2 cut(s)	953, 985
AluBI	AGCT	3 cut(s)	200, 810, 819
AluI	AGCT	3 cut(s)	200, 810, 819
Alw26I	GTCTC	3 cut(s)	602, 916, 1162
AlwI	GGATC	2 cut(s)	160, 992
AoxI	GGCC	1 cut(s)	65
ApeKI	GCWGC	4 cut(s)	5, 182, 185, 1068
ApoI	RAATTY	2 cut(s)	317, 458
Asp700I	GAANNNNTTC	1 cut(s)	971
AspLEI	GCGC	1 cut(s)	499
AspS9I	GGNCC	2 cut(s)	848, 1092
AvaII	GGWCC	2 cut(s)	848, 1092
BaeI	ACNNNNGTAYC	2 cut(s)	619, 652
BanII	GRGCYC	1 cut(s)	922
BarI	GAAGNNNNNNTAC	2 cut(s)	410, 442
BbsI	GAAGAC	1 cut(s)	410
BbvI	GCAGC	3 cut(s)	169, 172, 1080
BccI	CCATC	3 cut(s)	245, 572, 1037
BciT130I	CCWGG	1 cut(s)	916
BciVI	GTATCC	1 cut(s)	620
BclI	TGATCA	2 cut(s)	439, 552
BcoDI	GTCTC	3 cut(s)	602, 916, 1162
BfaI	CTAG	1 cut(s)	126
BfmI	CTRYAG	3 cut(s)	873, 900, 935
BfrI	CTTAAG	1 cut(s)	1025
BfuAI	ACCTGC	1 cut(s)	676
BfuI	GTATCC	1 cut(s)	620
BglII	AGATCT	2 cut(s)	735, 904
BisI	GCNGC	4 cut(s)	6, 183, 186, 1069
BlsI	GCNGC	4 cut(s)	7, 184, 187, 1070
BmcAI	AGTACT	1 cut(s)	1019
Bme1390I	CCNGG	1 cut(s)	916
Bme18I	GGWCC	2 cut(s)	848, 1092
BmgT120I	GGNCC	2 cut(s)	848, 1092
BmrFI	CCNGG	1 cut(s)	916
BmsI	GCATC	2 cut(s)	1133, 1147
BpiI	GAAGAC	1 cut(s)	410
BpmI	CTGGAG	1 cut(s)	898
Bpu10I	CCTNAGC	1 cut(s)	815
BpuEI	CTTGAG	1 cut(s)	753
BsaBI	GATNNNNATC	1 cut(s)	1002
BsaI	GGTCTC	2 cut(s)	916, 1162
BsaJI	CCNNGG	2 cut(s)	851, 915
BsaXI	ACNNNNNCTCC	2 cut(s)	953, 983
Bse1I	ACTGG	3 cut(s)	370, 679, 1025
Bse3DI	GCAATG	2 cut(s)	138, 1148
Bse8I	GATNNNNATC	1 cut(s)	1002
BseBI	CCWGG	1 cut(s)	916
BseDI	CCNNGG	2 cut(s)	851, 915
BseGI	GGATG	1 cut(s)	583
BseJI	GATNNNNATC	1 cut(s)	1002
BseMI	GCAATG	2 cut(s)	138, 1148
BseMII	CTCAG	1 cut(s)	522
BseNI	ACTGG	3 cut(s)	370, 679, 1025
BseRI	GAGGAG	1 cut(s)	494
BseXI	GCAGC	3 cut(s)	169, 172, 1080
BsgI	GTGCAG	1 cut(s)	962
BshFI	GGCC	1 cut(s)	67
BsmAI	GTCTC	3 cut(s)	602, 916, 1162
BsnI	GGCC	1 cut(s)	67
Bso31I	GGTCTC	2 cut(s)	916, 1162
Bsp1286I	GDGCHC	1 cut(s)	922
Bsp143I	GATC	7 cut(s)	152, 325, 439, 552, 735, 904, 997
BspANI	GGCC	1 cut(s)	67
BspCNI	CTCAG	1 cut(s)	523
BspHI	TCATGA	2 cut(s)	271, 991
BspMI	ACCTGC	1 cut(s)	676
BspPI	GGATC	2 cut(s)	160, 992
BspTI	CTTAAG	1 cut(s)	1025
BspTNI	GGTCTC	2 cut(s)	916, 1162
BsrDI	GCAATG	2 cut(s)	138, 1148
BsrI	ACTGG	3 cut(s)	370, 679, 1025
BssECI	CCNNGG	2 cut(s)	851, 915
BssMI	GATC	7 cut(s)	152, 325, 439, 552, 735, 904, 997
BssT1I	CCWWGG	1 cut(s)	851
Bst2UI	CCWGG	1 cut(s)	916
Bst4CI	ACNGT	1 cut(s)	379
Bst6I	CTCTTC	3 cut(s)	201, 247, 1165
BstAFI	CTTAAG	1 cut(s)	1025
BstC8I	GCNNGC	1 cut(s)	1073
BstDEI	CTNAG	2 cut(s)	531, 815
BstF5I	GGATG	1 cut(s)	583
BstHHI	GCGC	1 cut(s)	499
BstKTI	GATC	7 cut(s)	155, 328, 442, 555, 738, 907, 1000
BstMAI	GTCTC	3 cut(s)	602, 916, 1162
BstMBI	GATC	7 cut(s)	152, 325, 439, 552, 735, 904, 997
BstMWI	GCNNNNNNNGC	2 cut(s)	503, 816
BstNI	CCWGG	1 cut(s)	916
BstNSI	RCATGY	1 cut(s)	566
BstSCI	CCNGG	1 cut(s)	914
BstSFI	CTRYAG	3 cut(s)	873, 900, 935
BstV1I	GCAGC	3 cut(s)	169, 172, 1080
BstV2I	GAAGAC	1 cut(s)	410
BstX2I	RGATCY	3 cut(s)	735, 904, 997
BstYI	RGATCY	3 cut(s)	735, 904, 997
BsuI	GTATCC	1 cut(s)	620
BsuRI	GGCC	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	583
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	3 cut(s)	13, 363, 375
BveI	ACCTGC	1 cut(s)	676
Cac8I	GCNNGC	1 cut(s)	1073
CciI	TCATGA	2 cut(s)	271, 991
CfoI	GCGC	1 cut(s)	499
Cfr13I	GGNCC	2 cut(s)	848, 1092
CseI	GACGC	1 cut(s)	512
Csp6I	GTAC	3 cut(s)	213, 941, 1018
CviAII	CATG	6 cut(s)	193, 272, 563, 923, 992, 1176
CviQI	GTAC	3 cut(s)	213, 941, 1018
DdeI	CTNAG	2 cut(s)	531, 815
DpnI	GATC	7 cut(s)	154, 327, 441, 554, 737, 906, 999
DpnII	GATC	7 cut(s)	152, 325, 439, 552, 735, 904, 997
Eam1104I	CTCTTC	3 cut(s)	201, 247, 1165
EarI	CTCTTC	3 cut(s)	201, 247, 1165
Eco130I	CCWWGG	1 cut(s)	851
Eco24I	GRGCYC	1 cut(s)	922
Eco31I	GGTCTC	2 cut(s)	916, 1162
Eco47I	GGWCC	2 cut(s)	848, 1092
Eco57I	CTGAAG	4 cut(s)	192, 422, 680, 786
EcoRII	CCWGG	1 cut(s)	914
EcoT14I	CCWWGG	1 cut(s)	851
EcoT22I	ATGCAT	2 cut(s)	103, 1126
EcoT38I	GRGCYC	1 cut(s)	922
ErhI	CCWWGG	1 cut(s)	851
FaeI	CATG	6 cut(s)	196, 275, 566, 926, 995, 1179
FatI	CATG	6 cut(s)	192, 271, 562, 922, 991, 1175
FbaI	TGATCA	2 cut(s)	439, 552
Fnu4HI	GCNGC	4 cut(s)	6, 183, 186, 1069
FokI	GGATG	1 cut(s)	590
FriOI	GRGCYC	1 cut(s)	922
Fsp4HI	GCNGC	4 cut(s)	6, 183, 186, 1069
FspBI	CTAG	1 cut(s)	126
GlaI	GCGC	1 cut(s)	498
GluI	GCNGC	4 cut(s)	6, 183, 186, 1069
GsuI	CTGGAG	1 cut(s)	898
HaeIII	GGCC	1 cut(s)	67
HgaI	GACGC	1 cut(s)	512
HhaI	GCGC	1 cut(s)	499
Hin1II	CATG	6 cut(s)	196, 275, 566, 926, 995, 1179
Hin6I	GCGC	1 cut(s)	497
HinP1I	GCGC	1 cut(s)	497
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	3 cut(s)	166, 541, 1047
Hpy166II	GTNNAC	2 cut(s)	358, 943
Hpy188I	TCNGA	2 cut(s)	577, 805
Hpy8I	GTNNAC	2 cut(s)	358, 943
HpyAV	CCTTC	2 cut(s)	57, 982
HpyCH4III	ACNGT	1 cut(s)	379
HpyF10VI	GCNNNNNNNGC	2 cut(s)	503, 816
HpyF3I	CTNAG	2 cut(s)	531, 815
Hsp92II	CATG	6 cut(s)	196, 275, 566, 926, 995, 1179
HspAI	GCGC	1 cut(s)	497
Ksp22I	TGATCA	2 cut(s)	439, 552
Kzo9I	GATC	7 cut(s)	152, 325, 439, 552, 735, 904, 997
LmnI	GCTCC	1 cut(s)	694
Lsp1109I	GCAGC	3 cut(s)	169, 172, 1080
LweI	GCATC	2 cut(s)	1133, 1147
MaeI	CTAG	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	7 cut(s)	154, 327, 441, 554, 737, 906, 999
MboI	GATC	7 cut(s)	152, 325, 439, 552, 735, 904, 997
MboII	GAAGA	7 cut(s)	185, 218, 234, 415, 673, 1007, 1152
MfeI	CAATTG	1 cut(s)	492
MflI	RGATCY	3 cut(s)	735, 904, 997
MhlI	GDGCHC	1 cut(s)	922
MluCI	AATT	6 cut(s)	90, 317, 458, 492, 795, 883
MlyI	GAGTC	1 cut(s)	1041
MmeI	TCCRAC	2 cut(s)	555, 716
MnlI	CCTC	7 cut(s)	123, 143, 202, 293, 472, 586, 1105
Mph1103I	ATGCAT	2 cut(s)	103, 1126
MroXI	GAANNNNTTC	1 cut(s)	971
MseI	TTAA	6 cut(s)	393, 537, 615, 825, 1026, 1101
MspCI	CTTAAG	1 cut(s)	1025
MspR9I	CCNGG	1 cut(s)	916
MunI	CAATTG	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	916
MwoI	GCNNNNNNNGC	2 cut(s)	503, 816
NdeII	GATC	7 cut(s)	152, 325, 439, 552, 735, 904, 997
NlaIII	CATG	6 cut(s)	196, 275, 566, 926, 995, 1179
NmuCI	GTSAC	1 cut(s)	277
NsiI	ATGCAT	2 cut(s)	103, 1126
NspI	RCATGY	1 cut(s)	566
PagI	TCATGA	2 cut(s)	271, 991
PciI	ACATGT	1 cut(s)	562
PdmI	GAANNNNTTC	1 cut(s)	971
PfeI	GAWTC	2 cut(s)	166, 541
PkrI	GCNGC	4 cut(s)	7, 184, 187, 1070
PleI	GAGTC	1 cut(s)	1041
PpsI	GAGTC	1 cut(s)	1041
PscI	ACATGT	1 cut(s)	562
Psp6I	CCWGG	1 cut(s)	914
PspGI	CCWGG	1 cut(s)	914
PspPI	GGNCC	2 cut(s)	848, 1092
PsuI	RGATCY	3 cut(s)	735, 904, 997
RsaI	GTAC	3 cut(s)	214, 942, 1019
RsaNI	GTAC	3 cut(s)	213, 941, 1018
SaqAI	TTAA	6 cut(s)	393, 537, 615, 825, 1026, 1101
SatI	GCNGC	4 cut(s)	6, 183, 186, 1069
Sau3AI	GATC	7 cut(s)	152, 325, 439, 552, 735, 904, 997
Sau96I	GGNCC	2 cut(s)	848, 1092
ScaI	AGTACT	1 cut(s)	1019
SchI	GAGTC	1 cut(s)	1041
ScrFI	CCNGG	1 cut(s)	916
SduI	GDGCHC	1 cut(s)	922
SfaNI	GCATC	2 cut(s)	1133, 1147
SfcI	CTRYAG	3 cut(s)	873, 900, 935
SinI	GGWCC	2 cut(s)	848, 1092
SmlI	CTYRAG	2 cut(s)	768, 1025
SmoI	CTYRAG	2 cut(s)	768, 1025
Sse9I	AATT	6 cut(s)	90, 317, 458, 492, 795, 883
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	914
StyI	CCWWGG	1 cut(s)	851
TaaI	ACNGT	1 cut(s)	379
TaqI	TCGA	4 cut(s)	148, 285, 477, 647
TasI	AATT	6 cut(s)	90, 317, 458, 492, 795, 883
TatI	WGTACW	1 cut(s)	1017
TfiI	GAWTC	2 cut(s)	166, 541
Tru1I	TTAA	6 cut(s)	393, 537, 615, 825, 1026, 1101
Tru9I	TTAA	6 cut(s)	393, 537, 615, 825, 1026, 1101
TscAI	CASTG	3 cut(s)	20, 370, 382
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	4 cut(s)	5, 182, 185, 1068
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	6 cut(s)	211, 260, 475, 627, 980, 1008
TspGWI	ACGGA	2 cut(s)	737, 990
TspRI	CASTG	3 cut(s)	20, 370, 382
Vha464I	CTTAAG	1 cut(s)	1025
VpaK11BI	GGWCC	2 cut(s)	848, 1092
XapI	RAATTY	2 cut(s)	317, 458
XbaI	TCTAGA	1 cut(s)	125
XceI	RCATGY	1 cut(s)	566
XmnI	GAANNNNTTC	1 cut(s)	971
XspI	CTAG	1 cut(s)	126
ZrmI	AGTACT	1 cut(s)	1019
Zsp2I	ATGCAT	2 cut(s)	103, 1126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.