Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0007756

Physical Location & Seq

Genomic Coordinates Reverse (-)

4185770 .. 4188430

Gene Structure 2661 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG057600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCTTCCTCACACTGCTTTGCTCCTTTTGTATTTCTACTACTCCTTGTTGGATGTTCCGCAAGGCCATTATATCCACTTCCAAGTAAAGAGGCCAATAGATATAGACAGCCTCTACAAACTTCTAGACCATACAACATTGCACATCGAGGATCAAATGGAGAGATCCCTGAAGAAACTGCTGCAGCATACATGAGAGCAATTGAAGAGGGTGCAGACTTCATTGAAACAGATATTCTATCTTCTAAAGATGGTGTCCTTATATGCTTTCATGATGCGACCCTCGATGAGACAACTGATATTGCAAAGCATAAGGAATTTGCAGATCGCAAACGGACCTATGACGTTCAAGGGGTCAACACCCCTGGTTTTTTCACCGAACTGAAGACATTACGAGTGAAGCAGAGATACCCATTTCGTGATCAACAATATAATGGAAAATTTCCTATTATTACTTTTGAGGAGTTTATTTCAATCGCACTGGATGCACCCAGAGTTGTTGGCATATATCCGGAGATTAAGTATCCTGTATTGATCAACCAACATGTAAAGTGGTCAAATGGTAAGAGATTCGAGGACAAGTTTGTGGAGACACTTAAAAAGTACGGATACAAGGGTTCATATATGTCGAAAGATTGGCTGAAACAACCTGCATTTATCCAGTCATTTGCTCCAACTTCACTTGTTTATGTATCAAATCTGACAGACTTGCCCAAGATCTTTTTGATTGACGATATCACAAATCGTACTCAAGACACTAATCAGTCGTATTGGGAAATTACTTCAGACAGCTACCTTAGCTACATTAAGGAGTATGTGGTAGGCATTGGACCTTGGAAGGATACTGTGGTTCCCGTAGTAAATAATTATTTGCAAACACCTACAGACCTGGTCCCCATGGCTCATGCACATAACCTACAGGTGCACCCCTATACATTCAGGAATGATAACTCCTCCCTGCACTTTGACTTTCATCAAGATCCGTATCAAGAGTACGAGTACTGGCTTAATAAGATAGGTGTTGATGGACTCTTTACAGACTTCACAGGCAGCCTGCATAATTATCAAGAATGGACCTCTTTTAATCAAAGTGATAACAGTAATGCATCAAAGCTATTGCATAAAATAGCATTGCTGGTCTCTTCCTATACAAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005575 GO:0005623 GO:0008081 GO:0008889 GO:0016787 GO:0016788 GO:0042578 GO:0042597 GO:0043167 GO:0043169 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

GDPD

Protein Analysis

386

Amino Acids

44.5

Weight (kDa)

6.07

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	49 - 350	1.6e-53	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74210 AT5G08030 AT5G08030
fragaria_vesca	FvH4_5g13770 FvH4_5g13770 FvH4_5g13770
malus_domestica	MD06G1225600.v1.1 MD14G1212500.v1.1
prunus_persica	Prupe.5G205800_v2.0.a1 Prupe.5G205800_v2.0.a1 Prupe.5G205800_v2.0.a1
pyrus_communis	pycom06g18010
rosa_chinensis	RchiOBHm_Chr7g0183171
rosa_laevigata	RLG00000005070
rosa_multiflora	Rmu_ssc0000111.1_g000016
rosa_roxburghii	Rroxscaffold_3G00270690
rosa_rugosa	Rorug06G0454600 Rorug06G0454600
rosa_samantha	Rh7AG056900 Rh7BG056600 Rh7CG057600 Rh7CG057700 Rh7DG056500
rosa_wichuraiana	Rw7G004640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	658
AccIII	TCCGGA	1 cut(s)	511
AciI	CCGC	1 cut(s)	60
AclWI	GGATC	3 cut(s)	160, 160, 974
AcsI	RAATTY	2 cut(s)	317, 440
AcuI	CTGAAG	3 cut(s)	192, 404, 768
AfaI	GTAC	4 cut(s)	605, 748, 995, 1001
AflIII	ACRYGT	1 cut(s)	544
AgsI	TTSAA	4 cut(s)	206, 227, 350, 474
AjnI	CCWGG	2 cut(s)	364, 888
AluBI	AGCT	3 cut(s)	792, 801, 1114
AluI	AGCT	3 cut(s)	792, 801, 1114
Alw21I	GWGCWC	1 cut(s)	927
Alw26I	GTCTC	3 cut(s)	284, 584, 1144
Alw44I	GTGCAC	1 cut(s)	923
AlwI	GGATC	3 cut(s)	160, 160, 974
Aor13HI	TCCGGA	1 cut(s)	511
AoxI	GGCC	2 cut(s)	65, 93
ApaLI	GTGCAC	1 cut(s)	923
ApeKI	GCWGC	3 cut(s)	182, 185, 1050
ApoI	RAATTY	2 cut(s)	317, 440
AspS9I	GGNCC	4 cut(s)	336, 830, 892, 1074
AsuHPI	GGTGA	1 cut(s)	367
AvaII	GGWCC	4 cut(s)	336, 830, 892, 1074
BaeGI	GKGCMC	1 cut(s)	927
BaeI	ACNNNNGTAYC	4 cut(s)	601, 634, 834, 867
BarI	GAAGNNNNNNTAC	2 cut(s)	392, 424
BbsI	GAAGAC	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	927
BbvI	GCAGC	3 cut(s)	169, 197, 1062
BccI	CCATC	2 cut(s)	245, 1019
BciT130I	CCWGG	2 cut(s)	366, 890
BciVI	GTATCC	3 cut(s)	534, 602, 835
BclI	TGATCA	2 cut(s)	421, 534
BcoDI	GTCTC	3 cut(s)	284, 584, 1144
BfaI	CTAG	1 cut(s)	126
BfmI	CTRYAG	3 cut(s)	183, 882, 917
BfuAI	ACCTGC	1 cut(s)	658
BfuI	GTATCC	3 cut(s)	534, 602, 835
BglII	AGATCT	1 cut(s)	717
BisI	GCNGC	3 cut(s)	183, 186, 1051
BlsI	GCNGC	3 cut(s)	184, 187, 1052
BmcAI	AGTACT	1 cut(s)	1001
Bme1390I	CCNGG	2 cut(s)	366, 890
Bme18I	GGWCC	4 cut(s)	336, 830, 892, 1074
BmgT120I	GGNCC	4 cut(s)	336, 830, 892, 1074
BmiI	GGNNCC	2 cut(s)	852, 894
BmrFI	CCNGG	2 cut(s)	366, 890
BmsI	GCATC	3 cut(s)	265, 475, 1115
BpiI	GAAGAC	1 cut(s)	392
Bpu10I	CCTNAGC	1 cut(s)	797
BpuEI	CTTGAG	1 cut(s)	735
BsaBI	GATNNNNATC	1 cut(s)	984
BsaI	GGTCTC	1 cut(s)	1144
BsaJI	CCNNGG	3 cut(s)	364, 833, 897
BsaWI	WCCGGW	1 cut(s)	511
BsaXI	ACNNNNNCTCC	2 cut(s)	506, 536
Bse1I	ACTGG	3 cut(s)	486, 661, 1007
Bse3DI	GCAATG	2 cut(s)	138, 1130
Bse8I	GATNNNNATC	1 cut(s)	984
BseAI	TCCGGA	1 cut(s)	511
BseBI	CCWGG	2 cut(s)	366, 890
BseDI	CCNNGG	3 cut(s)	364, 833, 897
BseGI	GGATG	2 cut(s)	59, 490
BseJI	GATNNNNATC	1 cut(s)	984
BseMI	GCAATG	2 cut(s)	138, 1130
BseNI	ACTGG	3 cut(s)	486, 661, 1007
BseRI	GAGGAG	2 cut(s)	476, 943
BseSI	GKGCMC	1 cut(s)	927
BseXI	GCAGC	3 cut(s)	169, 197, 1062
BsgI	GTGCAG	2 cut(s)	234, 944
BshFI	GGCC	2 cut(s)	67, 95
BsiHKAI	GWGCWC	1 cut(s)	927
BsiSI	CCGG	1 cut(s)	512
BslFI	GGGAC	1 cut(s)	878
BsmAI	GTCTC	3 cut(s)	284, 584, 1144
BsmFI	GGGAC	1 cut(s)	878
BsnI	GGCC	2 cut(s)	67, 95
Bso31I	GGTCTC	1 cut(s)	1144
Bsp1286I	GDGCHC	1 cut(s)	927
Bsp13I	TCCGGA	1 cut(s)	511
Bsp143I	GATC	7 cut(s)	152, 165, 325, 421, 534, 717, 979
Bsp19I	CCATGG	1 cut(s)	897
BspACI	CCGC	1 cut(s)	60
BspANI	GGCC	2 cut(s)	67, 95
BspEI	TCCGGA	1 cut(s)	511
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	852, 894
BspMAI	CTGCAG	1 cut(s)	187
BspMI	ACCTGC	1 cut(s)	658
BspPI	GGATC	3 cut(s)	160, 160, 974
BspTNI	GGTCTC	1 cut(s)	1144
BsrDI	GCAATG	2 cut(s)	138, 1130
BsrI	ACTGG	3 cut(s)	486, 661, 1007
BssECI	CCNNGG	3 cut(s)	364, 833, 897
BssMI	GATC	7 cut(s)	152, 165, 325, 421, 534, 717, 979
BssT1I	CCWWGG	2 cut(s)	833, 897
Bst2UI	CCWGG	2 cut(s)	366, 890
Bst4CI	ACNGT	2 cut(s)	847, 1100
Bst6I	CTCTTC	2 cut(s)	201, 1147
BstAPI	GCANNNNNTGC	1 cut(s)	485
BstC8I	GCNNGC	1 cut(s)	1055
BstDEI	CTNAG	1 cut(s)	797
BstDSI	CCRYGG	1 cut(s)	897
BstF5I	GGATG	2 cut(s)	59, 490
BstKTI	GATC	7 cut(s)	155, 168, 328, 424, 537, 720, 982
BstMAI	GTCTC	3 cut(s)	284, 584, 1144
BstMBI	GATC	7 cut(s)	152, 165, 325, 421, 534, 717, 979
BstMWI	GCNNNNNNNGC	2 cut(s)	485, 798
BstNI	CCWGG	2 cut(s)	366, 890
BstNSI	RCATGY	1 cut(s)	548
BstSCI	CCNGG	2 cut(s)	364, 888
BstSFI	CTRYAG	3 cut(s)	183, 882, 917
BstSLI	GKGCMC	1 cut(s)	927
BstV1I	GCAGC	3 cut(s)	169, 197, 1062
BstV2I	GAAGAC	1 cut(s)	392
BstX2I	RGATCY	3 cut(s)	165, 717, 979
BstYI	RGATCY	3 cut(s)	165, 717, 979
BsuI	GTATCC	3 cut(s)	534, 602, 835
BsuRI	GGCC	2 cut(s)	67, 95
BtgI	CCRYGG	1 cut(s)	897
BtsCI	GGATG	2 cut(s)	59, 490
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	2 cut(s)	13, 479
BveI	ACCTGC	1 cut(s)	658
Cac8I	GCNNGC	1 cut(s)	1055
CciI	TCATGA	1 cut(s)	271
Cfr13I	GGNCC	4 cut(s)	336, 830, 892, 1074
CsiI	ACCWGGT	1 cut(s)	888
Csp6I	GTAC	4 cut(s)	604, 747, 994, 1000
CviAII	CATG	6 cut(s)	193, 272, 545, 898, 905, 1158
CviQI	GTAC	4 cut(s)	604, 747, 994, 1000
DdeI	CTNAG	1 cut(s)	797
DpnI	GATC	7 cut(s)	154, 167, 327, 423, 536, 719, 981
DpnII	GATC	7 cut(s)	152, 165, 325, 421, 534, 717, 979
Eam1104I	CTCTTC	2 cut(s)	201, 1147
EarI	CTCTTC	2 cut(s)	201, 1147
Eco130I	CCWWGG	2 cut(s)	833, 897
Eco31I	GGTCTC	1 cut(s)	1144
Eco32I	GATATC	1 cut(s)	736
Eco47I	GGWCC	4 cut(s)	336, 830, 892, 1074
Eco57I	CTGAAG	3 cut(s)	192, 404, 768
EcoRII	CCWGG	2 cut(s)	364, 888
EcoRV	GATATC	1 cut(s)	736
EcoT14I	CCWWGG	2 cut(s)	833, 897
EcoT22I	ATGCAT	1 cut(s)	1108
ErhI	CCWWGG	2 cut(s)	833, 897
FaeI	CATG	6 cut(s)	196, 275, 548, 901, 908, 1161
FaqI	GGGAC	1 cut(s)	878
FatI	CATG	6 cut(s)	192, 271, 544, 897, 904, 1157
FbaI	TGATCA	2 cut(s)	421, 534
Fnu4HI	GCNGC	3 cut(s)	183, 186, 1051
FokI	GGATG	2 cut(s)	66, 497
Fsp4HI	GCNGC	3 cut(s)	183, 186, 1051
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	3 cut(s)	183, 186, 1051
HaeIII	GGCC	2 cut(s)	67, 95
HapII	CCGG	1 cut(s)	512
Hin1II	CATG	6 cut(s)	196, 275, 548, 901, 908, 1161
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	2 cut(s)	570, 1029
HpaII	CCGG	1 cut(s)	512
HphI	GGTGA	1 cut(s)	367
Hpy166II	GTNNAC	2 cut(s)	358, 925
Hpy188I	TCNGA	2 cut(s)	702, 787
Hpy188III	TCNNGA	9 cut(s)	126, 272, 419, 512, 752, 940, 977, 989, 1067
Hpy8I	GTNNAC	2 cut(s)	358, 925
HpyAV	CCTTC	1 cut(s)	832
HpyCH4III	ACNGT	2 cut(s)	847, 1100
HpyCH4IV	ACGT	1 cut(s)	345
HpyF10VI	GCNNNNNNNGC	2 cut(s)	485, 798
HpyF3I	CTNAG	1 cut(s)	797
HpySE526I	ACGT	1 cut(s)	345
Hsp92II	CATG	6 cut(s)	196, 275, 548, 901, 908, 1161
Kpn2I	TCCGGA	1 cut(s)	511
Ksp22I	TGATCA	2 cut(s)	421, 534
Kzo9I	GATC	7 cut(s)	152, 165, 325, 421, 534, 717, 979
LmnI	GCTCC	2 cut(s)	28, 676
Lsp1109I	GCAGC	3 cut(s)	169, 197, 1062
LweI	GCATC	3 cut(s)	265, 475, 1115
MabI	ACCWGGT	1 cut(s)	888
MaeI	CTAG	1 cut(s)	126
MaeII	ACGT	1 cut(s)	345
MalI	GATC	7 cut(s)	154, 167, 327, 423, 536, 719, 981
MboI	GATC	7 cut(s)	152, 165, 325, 421, 534, 717, 979
MboII	GAAGA	5 cut(s)	185, 218, 234, 397, 1134
MfeI	CAATTG	1 cut(s)	201
MflI	RGATCY	3 cut(s)	165, 717, 979
MhlI	GDGCHC	1 cut(s)	927
MluCI	AATT	6 cut(s)	201, 317, 440, 777, 865, 1060
MlyI	GAGTC	1 cut(s)	1023
MmeI	TCCRAC	2 cut(s)	31, 698
Mph1103I	ATGCAT	1 cut(s)	1108
MroI	TCCGGA	1 cut(s)	511
MseI	TTAA	5 cut(s)	519, 597, 807, 1008, 1083
MspI	CCGG	1 cut(s)	512
MspR9I	CCNGG	2 cut(s)	366, 890
MunI	CAATTG	1 cut(s)	201
MvaI	CCWGG	2 cut(s)	366, 890
MwoI	GCNNNNNNNGC	2 cut(s)	485, 798
NcoI	CCATGG	1 cut(s)	897
NdeII	GATC	7 cut(s)	152, 165, 325, 421, 534, 717, 979
NlaIII	CATG	6 cut(s)	196, 275, 548, 901, 908, 1161
NlaIV	GGNNCC	2 cut(s)	852, 894
NsiI	ATGCAT	1 cut(s)	1108
NspI	RCATGY	1 cut(s)	548
PagI	TCATGA	1 cut(s)	271
PciI	ACATGT	1 cut(s)	544
PfeI	GAWTC	1 cut(s)	570
PflFI	GACNNNGTC	1 cut(s)	890
PkrI	GCNGC	3 cut(s)	184, 187, 1052
PleI	GAGTC	1 cut(s)	1023
PpsI	GAGTC	1 cut(s)	1023
PscI	ACATGT	1 cut(s)	544
Psp6I	CCWGG	2 cut(s)	364, 888
PspGI	CCWGG	2 cut(s)	364, 888
PspN4I	GGNNCC	2 cut(s)	852, 894
PspPI	GGNCC	4 cut(s)	336, 830, 892, 1074
PstI	CTGCAG	1 cut(s)	187
PsuI	RGATCY	3 cut(s)	165, 717, 979
PsyI	GACNNNGTC	1 cut(s)	890
RsaI	GTAC	4 cut(s)	605, 748, 995, 1001
RsaNI	GTAC	4 cut(s)	604, 747, 994, 1000
SaqAI	TTAA	5 cut(s)	519, 597, 807, 1008, 1083
SatI	GCNGC	3 cut(s)	183, 186, 1051
Sau3AI	GATC	7 cut(s)	152, 165, 325, 421, 534, 717, 979
Sau96I	GGNCC	4 cut(s)	336, 830, 892, 1074
ScaI	AGTACT	1 cut(s)	1001
SchI	GAGTC	1 cut(s)	1023
ScrFI	CCNGG	2 cut(s)	366, 890
SduI	GDGCHC	1 cut(s)	927
SexAI	ACCWGGT	1 cut(s)	888
SfaNI	GCATC	3 cut(s)	265, 475, 1115
SfcI	CTRYAG	3 cut(s)	183, 882, 917
SinI	GGWCC	4 cut(s)	336, 830, 892, 1074
SmlI	CTYRAG	1 cut(s)	750
SmoI	CTYRAG	1 cut(s)	750
Sse9I	AATT	6 cut(s)	201, 317, 440, 777, 865, 1060
SsiI	CCGC	1 cut(s)	60
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	2 cut(s)	364, 888
StyI	CCWWGG	2 cut(s)	833, 897
TaaI	ACNGT	2 cut(s)	847, 1100
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	4 cut(s)	148, 285, 573, 629
TasI	AATT	6 cut(s)	201, 317, 440, 777, 865, 1060
TatI	WGTACW	1 cut(s)	999
TfiI	GAWTC	1 cut(s)	570
Tru1I	TTAA	5 cut(s)	519, 597, 807, 1008, 1083
Tru9I	TTAA	5 cut(s)	519, 597, 807, 1008, 1083
TscAI	CASTG	2 cut(s)	20, 486
TseI	GCWGC	3 cut(s)	182, 185, 1050
TspDTI	ATGAA	4 cut(s)	211, 260, 609, 962
TspGWI	ACGGA	3 cut(s)	349, 621, 972
TspRI	CASTG	2 cut(s)	20, 486
Tth111I	GACNNNGTC	1 cut(s)	890
VneI	GTGCAC	1 cut(s)	923
VpaK11BI	GGWCC	4 cut(s)	336, 830, 892, 1074
XapI	RAATTY	2 cut(s)	317, 440
XbaI	TCTAGA	1 cut(s)	125
XceI	RCATGY	1 cut(s)	548
XspI	CTAG	1 cut(s)	126
ZrmI	AGTACT	1 cut(s)	1001
Zsp2I	ATGCAT	1 cut(s)	1108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.