Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0007756

Physical Location & Seq

Genomic Coordinates Reverse (-)

29725666 .. 29729698

Gene Structure 4033 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1212500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGCTTCCTCCCACTGCTTTGCTCCTTTTGTGTTCCTACTGCTCCTTGTTGGGTGTTCTGGAAGGCCATTCTATCCACTTCCTAGTAAAGCAGGTGATCCTACCAATAGACAGCCTCTACAAACTTATCGTCCATACAACATTGCTCATCGAGGTTCAAATGGAGAAATTCCCGAAGAAACTGCTGCTGCATACATGAGAGCTATTAAAGAGGGTGCAGACTTCATTGAAACGGATATCCTATCTTCTAAAGATGGTGTGCTTATATGCTTTCATGATGTGACCCTTGATGACACAACTGATGTTGCCGAACACAAGGAATTTGCAGATCGTAAAAGAACCTATGAAGTTCAAGGGGTCAACACTACTGGTTTTTTTACTGTTGATTTTACAACAAAAGAACTGAAGAAATTACGAGTGAAGCAGAGATACCCATTTCGGGATCAGCAATATAATGGAAAATATCCTATTATTACTTTTGAAGAGTTCATTTCAATCGCACTGGATTCACCCAGAGTTGTTGGAATATATCCGGAGATTAAAAACCCAGTATTGATCAACCAACATGTGAAGTGGGCAGATGGTAAGAGGTTCGAGGACAGATTTGTGGAGACACTTAAGAAGTACGGATACAAGGGTTCATACCTATCAAAAGATTGGTTGAAACAACCTGCATTTATCCAGTCATTTGCTCCAACTTCACTTGTATACGTATCAAATCTGACAGACTTGCCCAAGATATTCTTAATTGACGATGTTACTGTTCCAACCCAAGACACTAATCAGTCCTATTGGGAAATTACTTCGGATCCTTACCTTGACTACATTAAAGATTATGTGGTGGGCATTGGACCGTGGAAGGATACTATAGTTCCTGTAGTAAATAATTATTTGCAAACACCTACCGATTTGGTCTCCAGAGCCCACGCACATGACCTACAGGTGCACCCCTACACGTACAGAAACGAGAACTCATTCCTGCACTTGGACTTTCATCAAGATCCATACGCGGAGTACAATTACTGGATTAACGAGATAGGTGTCGATGGACTTTTTACAGACTTCACAGGAAGCCTGCATAACTTTCAAGAGTGGACCTCCTTCAATGAAAGTGATGACAAGAATGCATCAAGTTTACTGCACCAAATAGCGTCAATGGTCTCTCCCTATAAGAAGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005575 GO:0005623 GO:0008081 GO:0008889 GO:0016787 GO:0016788 GO:0042578 GO:0042597 GO:0043167 GO:0043169 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

GDPD

Protein Analysis

394

Amino Acids

45.19

Weight (kDa)

5.47

Isoelectric Point (pI)

30.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	50 - 357	1.2e-54	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74210 AT5G08030 AT5G08030
fragaria_vesca	FvH4_5g13770 FvH4_5g13770 FvH4_5g13770
malus_domestica	MD06G1225600.v1.1 MD14G1212500.v1.1
prunus_persica	Prupe.5G205800_v2.0.a1 Prupe.5G205800_v2.0.a1 Prupe.5G205800_v2.0.a1
pyrus_communis	pycom06g18010
rosa_chinensis	RchiOBHm_Chr7g0183171
rosa_laevigata	RLG00000005070
rosa_multiflora	Rmu_ssc0000111.1_g000016
rosa_roxburghii	Rroxscaffold_3G00270690
rosa_rugosa	Rorug06G0454600 Rorug06G0454600
rosa_samantha	Rh7AG056900 Rh7BG056600 Rh7CG057600 Rh7CG057700 Rh7DG056500
rosa_wichuraiana	Rw7G004640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	83
Acc36I	ACCTGC	2 cut(s)	83, 679
AccI	GTMKAC	1 cut(s)	708
AccII	CGCG	1 cut(s)	1010
AccIII	TCCGGA	1 cut(s)	532
AciI	CCGC	1 cut(s)	1010
AclWI	GGATC	5 cut(s)	92, 450, 803, 816, 995
AcsI	RAATTY	2 cut(s)	168, 320
AcuI	CTGAAG	1 cut(s)	425
AfaI	GTAC	3 cut(s)	626, 959, 1016
AfiI	CCNNNNNNNGG	2 cut(s)	439, 985
AflII	CTTAAG	1 cut(s)	617
AflIII	ACRYGT	2 cut(s)	565, 954
AgsI	TTSAA	8 cut(s)	159, 230, 353, 482, 495, 664, 1088, 1105
AluBI	AGCT	1 cut(s)	203
AluI	AGCT	1 cut(s)	203
Alw21I	GWGCWC	1 cut(s)	948
Alw26I	GTCTC	3 cut(s)	605, 919, 1165
Alw44I	GTGCAC	1 cut(s)	944
AlwI	GGATC	5 cut(s)	92, 450, 803, 816, 995
Aor13HI	TCCGGA	1 cut(s)	532
AoxI	GGCC	1 cut(s)	65
ApaLI	GTGCAC	1 cut(s)	944
ApeKI	GCWGC	2 cut(s)	185, 188
ApoI	RAATTY	2 cut(s)	168, 320
ArsI	GACNNNNNNTTYG	2 cut(s)	115, 147
Asp700I	GAANNNNTTC	1 cut(s)	974
AspS9I	GGNCC	2 cut(s)	851, 1095
AsuHPI	GGTGA	2 cut(s)	107, 501
AvaII	GGWCC	2 cut(s)	851, 1095
BaeGI	GKGCMC	1 cut(s)	948
BaeI	ACNNNNGTAYC	4 cut(s)	622, 655, 855, 888
BamHI	GGATCC	1 cut(s)	808
BanII	GRGCYC	1 cut(s)	925
BarI	GAAGNNNNNNTAC	4 cut(s)	413, 445, 614, 646
Bbv12I	GWGCWC	1 cut(s)	948
BbvI	GCAGC	2 cut(s)	172, 175
BccI	CCATC	3 cut(s)	248, 575, 1040
BcgI	CGANNNNNNTGC	2 cut(s)	164, 198
BciVI	GTATCC	2 cut(s)	623, 856
BclI	TGATCA	1 cut(s)	555
BcoDI	GTCTC	3 cut(s)	605, 919, 1165
BfaI	CTAG	1 cut(s)	84
BfmI	CTRYAG	3 cut(s)	867, 876, 938
BfrI	CTTAAG	1 cut(s)	617
BfuAI	ACCTGC	2 cut(s)	83, 679
BfuI	GTATCC	2 cut(s)	623, 856
BisI	GCNGC	2 cut(s)	186, 189
BlsI	GCNGC	2 cut(s)	187, 190
Bme18I	GGWCC	2 cut(s)	851, 1095
BmgT120I	GGNCC	2 cut(s)	851, 1095
BmiI	GGNNCC	1 cut(s)	810
BmrI	ACTGGG	1 cut(s)	542
BmsI	GCATC	1 cut(s)	1136
BmuI	ACTGGG	1 cut(s)	542
BplI	GAGNNNNNCTC	2 cut(s)	1082, 1114
BpmI	CTGGAG	1 cut(s)	901
BsaAI	YACGTR	2 cut(s)	712, 957
BsaI	GGTCTC	2 cut(s)	919, 1165
BsaJI	CCNNGG	1 cut(s)	854
BsaWI	WCCGGW	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	2 cut(s)	439, 985
Bse1I	ACTGG	5 cut(s)	373, 507, 548, 682, 1028
Bse3DI	GCAATG	1 cut(s)	141
BseAI	TCCGGA	1 cut(s)	532
BseDI	CCNNGG	1 cut(s)	854
BseLI	CCNNNNNNNGG	2 cut(s)	439, 985
BseMI	GCAATG	1 cut(s)	141
BseNI	ACTGG	5 cut(s)	373, 507, 548, 682, 1028
BseSI	GKGCMC	1 cut(s)	948
BseXI	GCAGC	2 cut(s)	172, 175
BsgI	GTGCAG	3 cut(s)	237, 965, 1124
Bsh1236I	CGCG	1 cut(s)	1010
BshFI	GGCC	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	948
BsiSI	CCGG	1 cut(s)	533
BslI	CCNNNNNNNGG	2 cut(s)	439, 985
BsmAI	GTCTC	3 cut(s)	605, 919, 1165
BsmI	GAATGC	1 cut(s)	1129
BsnI	GGCC	1 cut(s)	67
Bso31I	GGTCTC	2 cut(s)	919, 1165
Bsp1286I	GDGCHC	2 cut(s)	925, 948
Bsp13I	TCCGGA	1 cut(s)	532
Bsp143I	GATC	6 cut(s)	97, 328, 442, 555, 808, 1000
BspACI	CCGC	1 cut(s)	1010
BspANI	GGCC	1 cut(s)	67
BspEI	TCCGGA	1 cut(s)	532
BspFNI	CGCG	1 cut(s)	1010
BspHI	TCATGA	1 cut(s)	274
BspLI	GGNNCC	1 cut(s)	810
BspMI	ACCTGC	2 cut(s)	83, 679
BspPI	GGATC	5 cut(s)	92, 450, 803, 816, 995
BspTI	CTTAAG	1 cut(s)	617
BspTNI	GGTCTC	2 cut(s)	919, 1165
BsrDI	GCAATG	1 cut(s)	141
BsrI	ACTGG	5 cut(s)	373, 507, 548, 682, 1028
BssECI	CCNNGG	1 cut(s)	854
BssMI	GATC	6 cut(s)	97, 328, 442, 555, 808, 1000
BssNAI	GTATAC	1 cut(s)	709
Bst1107I	GTATAC	1 cut(s)	709
Bst4CI	ACNGT	3 cut(s)	382, 763, 855
Bst6I	CTCTTC	1 cut(s)	477
BstAFI	CTTAAG	1 cut(s)	617
BstBAI	YACGTR	2 cut(s)	712, 957
BstC8I	GCNNGC	1 cut(s)	1076
BstDSI	CCRYGG	1 cut(s)	854
BstFNI	CGCG	1 cut(s)	1010
BstKTI	GATC	6 cut(s)	100, 331, 445, 558, 811, 1003
BstMAI	GTCTC	3 cut(s)	605, 919, 1165
BstMBI	GATC	6 cut(s)	97, 328, 442, 555, 808, 1000
BstNSI	RCATGY	1 cut(s)	569
BstSFI	CTRYAG	3 cut(s)	867, 876, 938
BstSLI	GKGCMC	1 cut(s)	948
BstSNI	TACGTA	1 cut(s)	712
BstUI	CGCG	1 cut(s)	1010
BstV1I	GCAGC	2 cut(s)	172, 175
BstX2I	RGATCY	2 cut(s)	808, 1000
BstYI	RGATCY	2 cut(s)	808, 1000
BstZ17I	GTATAC	1 cut(s)	709
BsuI	GTATCC	2 cut(s)	623, 856
BsuRI	GGCC	1 cut(s)	67
BtgI	CCRYGG	1 cut(s)	854
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	2 cut(s)	13, 500
BveI	ACCTGC	2 cut(s)	83, 679
Cac8I	GCNNGC	1 cut(s)	1076
CciI	TCATGA	1 cut(s)	274
Cfr13I	GGNCC	2 cut(s)	851, 1095
CseI	GACGC	1 cut(s)	1140
Csp6I	GTAC	3 cut(s)	625, 958, 1015
CviAII	CATG	4 cut(s)	196, 275, 566, 932
CviJI	RGCY	6 cut(s)	5, 67, 115, 203, 923, 1074
CviKI_1	RGCY	6 cut(s)	5, 67, 115, 203, 923, 1074
CviQI	GTAC	3 cut(s)	625, 958, 1015
DpnI	GATC	6 cut(s)	99, 330, 444, 557, 810, 1002
DpnII	GATC	6 cut(s)	97, 328, 442, 555, 808, 1000
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Eco105I	TACGTA	1 cut(s)	712
Eco24I	GRGCYC	1 cut(s)	925
Eco31I	GGTCTC	2 cut(s)	919, 1165
Eco32I	GATATC	1 cut(s)	238
Eco47I	GGWCC	2 cut(s)	851, 1095
Eco57I	CTGAAG	1 cut(s)	425
EcoRV	GATATC	1 cut(s)	238
EcoT22I	ATGCAT	1 cut(s)	1129
EcoT38I	GRGCYC	1 cut(s)	925
FaeI	CATG	4 cut(s)	199, 278, 569, 935
FalI	AAGNNNNNCTT	2 cut(s)	728, 760
FatI	CATG	4 cut(s)	195, 274, 565, 931
FbaI	TGATCA	1 cut(s)	555
FblI	GTMKAC	1 cut(s)	708
Fnu4HI	GCNGC	2 cut(s)	186, 189
FriOI	GRGCYC	1 cut(s)	925
Fsp4HI	GCNGC	2 cut(s)	186, 189
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	2 cut(s)	186, 189
GsuI	CTGGAG	1 cut(s)	901
HaeIII	GGCC	1 cut(s)	67
HapII	CCGG	1 cut(s)	533
HgaI	GACGC	1 cut(s)	1140
Hin1II	CATG	4 cut(s)	199, 278, 569, 935
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	1 cut(s)	506
HpaII	CCGG	1 cut(s)	533
HphI	GGTGA	2 cut(s)	107, 501
Hpy166II	GTNNAC	5 cut(s)	361, 709, 946, 1095, 1136
Hpy188I	TCNGA	2 cut(s)	723, 808
Hpy188III	TCNNGA	8 cut(s)	60, 173, 275, 440, 533, 918, 998, 1088
Hpy8I	GTNNAC	5 cut(s)	361, 709, 946, 1095, 1136
HpyAV	CCTTC	4 cut(s)	57, 853, 1111, 1168
HpyCH4III	ACNGT	3 cut(s)	382, 763, 855
HpyCH4IV	ACGT	2 cut(s)	711, 956
HpySE526I	ACGT	2 cut(s)	711, 956
Hsp92II	CATG	4 cut(s)	199, 278, 569, 935
Kpn2I	TCCGGA	1 cut(s)	532
Ksp22I	TGATCA	1 cut(s)	555
Kzo9I	GATC	6 cut(s)	97, 328, 442, 555, 808, 1000
LmnI	GCTCC	3 cut(s)	28, 48, 697
Lsp1109I	GCAGC	2 cut(s)	172, 175
LweI	GCATC	1 cut(s)	1136
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	2 cut(s)	711, 956
MaeIII	GTNAC	2 cut(s)	280, 757
MalI	GATC	6 cut(s)	99, 330, 444, 557, 810, 1002
MboI	GATC	6 cut(s)	97, 328, 442, 555, 808, 1000
MboII	GAAGA	4 cut(s)	188, 237, 418, 494
MflI	RGATCY	2 cut(s)	808, 1000
MhlI	GDGCHC	2 cut(s)	925, 948
MluCI	AATT	7 cut(s)	168, 320, 410, 747, 798, 886, 1018
MmeI	TCCRAC	3 cut(s)	502, 719, 791
MnlI	CCTC	7 cut(s)	19, 126, 146, 205, 582, 589, 1108
Mph1103I	ATGCAT	1 cut(s)	1129
MroI	TCCGGA	1 cut(s)	532
MroXI	GAANNNNTTC	1 cut(s)	974
MseI	TTAA	6 cut(s)	207, 540, 618, 746, 828, 1029
MslI	CAYNNNNRTG	1 cut(s)	930
MspCI	CTTAAG	1 cut(s)	617
MspI	CCGG	1 cut(s)	533
Mva1269I	GAATGC	1 cut(s)	1129
MvnI	CGCG	1 cut(s)	1010
NdeII	GATC	6 cut(s)	97, 328, 442, 555, 808, 1000
NlaIII	CATG	4 cut(s)	199, 278, 569, 935
NlaIV	GGNNCC	1 cut(s)	810
NmuCI	GTSAC	1 cut(s)	280
NsiI	ATGCAT	1 cut(s)	1129
NspI	RCATGY	1 cut(s)	569
PagI	TCATGA	1 cut(s)	274
PaqCI	CACCTGC	1 cut(s)	83
PciI	ACATGT	1 cut(s)	565
PctI	GAATGC	1 cut(s)	1129
PdmI	GAANNNNTTC	1 cut(s)	974
PfeI	GAWTC	1 cut(s)	506
PkrI	GCNGC	2 cut(s)	187, 190
Ppu21I	YACGTR	2 cut(s)	712, 957
PscI	ACATGT	1 cut(s)	565
PspN4I	GGNNCC	1 cut(s)	810
PspPI	GGNCC	2 cut(s)	851, 1095
PsuI	RGATCY	2 cut(s)	808, 1000
RsaI	GTAC	3 cut(s)	626, 959, 1016
RsaNI	GTAC	3 cut(s)	625, 958, 1015
RseI	CAYNNNNRTG	1 cut(s)	930
SaqAI	TTAA	6 cut(s)	207, 540, 618, 746, 828, 1029
SatI	GCNGC	2 cut(s)	186, 189
Sau3AI	GATC	6 cut(s)	97, 328, 442, 555, 808, 1000
Sau96I	GGNCC	2 cut(s)	851, 1095
SduI	GDGCHC	2 cut(s)	925, 948
SfaNI	GCATC	1 cut(s)	1136
SfcI	CTRYAG	3 cut(s)	867, 876, 938
SinI	GGWCC	2 cut(s)	851, 1095
SmiMI	CAYNNNNRTG	1 cut(s)	930
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
SnaBI	TACGTA	1 cut(s)	712
Sse9I	AATT	7 cut(s)	168, 320, 410, 747, 798, 886, 1018
SsiI	CCGC	1 cut(s)	1010
SspMI	CTAG	1 cut(s)	84
TaaI	ACNGT	3 cut(s)	382, 763, 855
TaiI	ACGT	2 cut(s)	714, 959
TaqI	TCGA	3 cut(s)	151, 594, 1044
TasI	AATT	7 cut(s)	168, 320, 410, 747, 798, 886, 1018
TatI	WGTACW	1 cut(s)	1014
TfiI	GAWTC	1 cut(s)	506
Tru1I	TTAA	6 cut(s)	207, 540, 618, 746, 828, 1029
Tru9I	TTAA	6 cut(s)	207, 540, 618, 746, 828, 1029
TscAI	CASTG	2 cut(s)	20, 507
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	2 cut(s)	185, 188
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	7 cut(s)	214, 263, 360, 478, 630, 983, 1122
TspGWI	ACGGA	2 cut(s)	248, 642
TspRI	CASTG	2 cut(s)	20, 507
Vha464I	CTTAAG	1 cut(s)	617
VneI	GTGCAC	1 cut(s)	944
VpaK11BI	GGWCC	2 cut(s)	851, 1095
XapI	RAATTY	2 cut(s)	168, 320
XceI	RCATGY	1 cut(s)	569
XmiI	GTMKAC	1 cut(s)	708
XmnI	GAANNNNTTC	1 cut(s)	974
XspI	CTAG	1 cut(s)	84
Zsp2I	ATGCAT	1 cut(s)	1129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.