Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0007756

Physical Location & Seq

Genomic Coordinates Reverse (-)

35619957 .. 35624319

Gene Structure 4363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1225600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGCTTCCTCACACTGCTTTGCACCTCTTGTGTTCCTACTGCTCCTTGTTGGGTGTTCCGGAAGGCCAATCGATCCGCATGCCACCAATAGACAGCCTCTACAGACTTCTCGTCCATACAACATTGCTCATCGAGGTTCAAATGGAGAGATTCCTGAAGAAACTGCTGCTGCATACATAAGAGCTATTGAAGAGGGTGCAGACTTCATTGAAACGGATATCCTATCTTCCAAAGATGGTGTTCTTATATGCTTTCATGATGTGACCCTTGATGATACAACTGATGTTGCCGAACACAAGGAGTTTGCAGATCGTAAAAGAACCTATGAAGTTCAAGGGTTCAACACTACCGGTTTTTTTACTGTTGATTTTACACTAAAAGAACTGAAGTCATTACGAGTGAAGCAGAGATACTCATTTCGGGATCAACAATATAATGGAAAATATCCGATTATTACTTTTGAAGAGTACATTTCAATCGCACTGGACGCACCCAGAGTTGTTGGAATATATCCGGAGATTAAAAATCCTGTATTGATCAACCAACATGTGAAGTGGGCAGATGGTAAGAGGTTTGAGGACAAATTTGTGGAGACACTTACGAAGTACGGATACAAGGGTTCATACCTATCAAAAGATTGGTTGAAACAACCTGCATTTATCCAGTCATTTGCTCCAACTTCACTTGTATACGTATCAAATCTGACAGACTTGCCCAAGATCTTCTTAATTGACGATGTTACTATTCCAACGCAAGACACTAATCAGTCCTATTGGGAAATTACTTCGGATCCTTACCTTGACTACATTAAGGATTATGTGGTGGGCATTGGACCGTGGAAAGATACTATAGTTCCTGTAGTGAACAATTATTTGCAAACACCTACCGATTTGGTCTCCAGAGCCCATGCACATGACCTACAGGTGCACCCCTACACATACAGAAACGAGAACTCATTCCTGCACTTGAACTTTCATCAAGATCCATACGCAGAGTACAATTACTGGATTAACGAGATAGGTGTCGATGGACTTTTTACAGACTTCACAGGAAGCCTACATAACTTTCAAGAGTGGACCTCCTTCAATGACAAGAATGCATCAAGTTTATTGCACAAAATAGCATCAATGGTCTCTTCCTATGAGAAGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005575 GO:0005623 GO:0008081 GO:0008889 GO:0016787 GO:0016788 GO:0042578 GO:0042597 GO:0043167 GO:0043169 GO:0044464 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

GDPD

Protein Analysis

385

Amino Acids

44.05

Weight (kDa)

5.29

Isoelectric Point (pI)

26.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	44 - 351	7.8e-54	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74210 AT5G08030 AT5G08030
fragaria_vesca	FvH4_5g13770 FvH4_5g13770 FvH4_5g13770
malus_domestica	MD06G1225600.v1.1 MD14G1212500.v1.1
prunus_persica	Prupe.5G205800_v2.0.a1 Prupe.5G205800_v2.0.a1 Prupe.5G205800_v2.0.a1
pyrus_communis	pycom06g18010
rosa_chinensis	RchiOBHm_Chr7g0183171
rosa_laevigata	RLG00000005070
rosa_multiflora	Rmu_ssc0000111.1_g000016
rosa_roxburghii	Rroxscaffold_3G00270690
rosa_rugosa	Rorug06G0454600 Rorug06G0454600
rosa_samantha	Rh7AG056900 Rh7BG056600 Rh7CG057600 Rh7CG057700 Rh7DG056500
rosa_wichuraiana	Rw7G004640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	661
AccI	GTMKAC	1 cut(s)	690
AccIII	TCCGGA	2 cut(s)	59, 514
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	5 cut(s)	68, 432, 785, 798, 977
AcsI	RAATTY	1 cut(s)	584
AcuI	CTGAAG	2 cut(s)	177, 407
AfaI	GTAC	3 cut(s)	470, 608, 998
AflIII	ACRYGT	1 cut(s)	547
AgeI	ACCGGT	1 cut(s)	350
AhdI	GACNNNNNGTC	1 cut(s)	111
AluBI	AGCT	1 cut(s)	185
AluI	AGCT	1 cut(s)	185
Alw21I	GWGCWC	1 cut(s)	930
Alw26I	GTCTC	3 cut(s)	587, 901, 1138
Alw44I	GTGCAC	1 cut(s)	926
AlwI	GGATC	5 cut(s)	68, 432, 785, 798, 977
Aor13HI	TCCGGA	2 cut(s)	59, 514
AoxI	GGCC	1 cut(s)	65
ApaLI	GTGCAC	1 cut(s)	926
ApeKI	GCWGC	2 cut(s)	167, 170
ApoI	RAATTY	1 cut(s)	584
AsiGI	ACCGGT	1 cut(s)	350
Asp700I	GAANNNNTTC	1 cut(s)	956
AspS9I	GGNCC	2 cut(s)	833, 1077
AvaII	GGWCC	2 cut(s)	833, 1077
BaeGI	GKGCMC	1 cut(s)	930
BaeI	ACNNNNGTAYC	4 cut(s)	604, 637, 837, 870
BamHI	GGATCC	1 cut(s)	790
BanII	GRGCYC	1 cut(s)	907
BarI	GAAGNNNNNNTAC	4 cut(s)	395, 427, 596, 628
Bbv12I	GWGCWC	1 cut(s)	930
BbvI	GCAGC	2 cut(s)	154, 157
BccI	CCATC	3 cut(s)	230, 557, 1022
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BciVI	GTATCC	1 cut(s)	605
BclI	TGATCA	1 cut(s)	537
BcoDI	GTCTC	3 cut(s)	587, 901, 1138
BfmI	CTRYAG	4 cut(s)	101, 849, 858, 920
BfuAI	ACCTGC	1 cut(s)	661
BfuI	GTATCC	1 cut(s)	605
BglII	AGATCT	1 cut(s)	720
BisI	GCNGC	2 cut(s)	168, 171
BlsI	GCNGC	2 cut(s)	169, 172
Bme18I	GGWCC	2 cut(s)	833, 1077
BmeRI	GACNNNNNGTC	1 cut(s)	111
BmgT120I	GGNCC	2 cut(s)	833, 1077
BmiI	GGNNCC	1 cut(s)	792
BmsI	GCATC	2 cut(s)	1109, 1133
BplI	GAGNNNNNCTC	2 cut(s)	1064, 1096
BpmI	CTGGAG	1 cut(s)	883
Bsa29I	ATCGAT	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	694
BsaI	GGTCTC	2 cut(s)	901, 1138
BsaJI	CCNNGG	1 cut(s)	836
BsaWI	WCCGGW	3 cut(s)	59, 350, 514
Bse118I	RCCGGY	1 cut(s)	350
Bse1I	ACTGG	3 cut(s)	489, 664, 1010
Bse3DI	GCAATG	1 cut(s)	123
BseAI	TCCGGA	2 cut(s)	59, 514
BseCI	ATCGAT	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	836
BseMI	GCAATG	1 cut(s)	123
BseNI	ACTGG	3 cut(s)	489, 664, 1010
BseSI	GKGCMC	1 cut(s)	930
BseXI	GCAGC	2 cut(s)	154, 157
BsgI	GTGCAG	2 cut(s)	219, 947
BshFI	GGCC	1 cut(s)	67
BshTI	ACCGGT	1 cut(s)	350
BshVI	ATCGAT	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	930
BsiSI	CCGG	3 cut(s)	60, 351, 515
BsmAI	GTCTC	3 cut(s)	587, 901, 1138
BsmI	GAATGC	1 cut(s)	1102
BsnI	GGCC	1 cut(s)	67
Bso31I	GGTCTC	2 cut(s)	901, 1138
Bsp1286I	GDGCHC	2 cut(s)	907, 930
Bsp13I	TCCGGA	2 cut(s)	59, 514
Bsp143I	GATC	7 cut(s)	73, 310, 424, 537, 720, 790, 982
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	1 cut(s)	67
BspDI	ATCGAT	1 cut(s)	72
BspEI	TCCGGA	2 cut(s)	59, 514
BspHI	TCATGA	1 cut(s)	256
BspLI	GGNNCC	1 cut(s)	792
BspMI	ACCTGC	1 cut(s)	661
BspPI	GGATC	5 cut(s)	68, 432, 785, 798, 977
BspTNI	GGTCTC	2 cut(s)	901, 1138
BsrDI	GCAATG	1 cut(s)	123
BsrFI	RCCGGY	1 cut(s)	350
BsrI	ACTGG	3 cut(s)	489, 664, 1010
BssAI	RCCGGY	1 cut(s)	350
BssECI	CCNNGG	1 cut(s)	836
BssMI	GATC	7 cut(s)	73, 310, 424, 537, 720, 790, 982
BssNAI	GTATAC	1 cut(s)	691
Bst1107I	GTATAC	1 cut(s)	691
Bst4CI	ACNGT	2 cut(s)	364, 837
Bst6I	CTCTTC	3 cut(s)	186, 459, 1141
BstBAI	YACGTR	1 cut(s)	694
BstC8I	GCNNGC	1 cut(s)	81
BstDSI	CCRYGG	1 cut(s)	836
BstKTI	GATC	7 cut(s)	76, 313, 427, 540, 723, 793, 985
BstMAI	GTCTC	3 cut(s)	587, 901, 1138
BstMBI	GATC	7 cut(s)	73, 310, 424, 537, 720, 790, 982
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstNSI	RCATGY	2 cut(s)	83, 551
BstSFI	CTRYAG	4 cut(s)	101, 849, 858, 920
BstSLI	GKGCMC	1 cut(s)	930
BstSNI	TACGTA	1 cut(s)	694
BstV1I	GCAGC	2 cut(s)	154, 157
BstX2I	RGATCY	3 cut(s)	720, 790, 982
BstYI	RGATCY	3 cut(s)	720, 790, 982
BstZ17I	GTATAC	1 cut(s)	691
Bsu15I	ATCGAT	1 cut(s)	72
BsuI	GTATCC	1 cut(s)	605
BsuRI	GGCC	1 cut(s)	67
BsuTUI	ATCGAT	1 cut(s)	72
BtgI	CCRYGG	1 cut(s)	836
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	2 cut(s)	13, 482
BveI	ACCTGC	1 cut(s)	661
Cac8I	GCNNGC	1 cut(s)	81
CciI	TCATGA	1 cut(s)	256
Cfr10I	RCCGGY	1 cut(s)	350
Cfr13I	GGNCC	2 cut(s)	833, 1077
ClaI	ATCGAT	1 cut(s)	72
CseI	GACGC	1 cut(s)	497
Csp6I	GTAC	3 cut(s)	469, 607, 997
CspAI	ACCGGT	1 cut(s)	350
CviAII	CATG	5 cut(s)	80, 257, 548, 908, 914
CviJI	RGCY	6 cut(s)	5, 67, 97, 185, 905, 1056
CviKI_1	RGCY	6 cut(s)	5, 67, 97, 185, 905, 1056
CviQI	GTAC	3 cut(s)	469, 607, 997
DpnI	GATC	7 cut(s)	75, 312, 426, 539, 722, 792, 984
DpnII	GATC	7 cut(s)	73, 310, 424, 537, 720, 790, 982
DriI	GACNNNNNGTC	1 cut(s)	111
Eam1104I	CTCTTC	3 cut(s)	186, 459, 1141
Eam1105I	GACNNNNNGTC	1 cut(s)	111
EarI	CTCTTC	3 cut(s)	186, 459, 1141
Eco105I	TACGTA	1 cut(s)	694
Eco24I	GRGCYC	1 cut(s)	907
Eco31I	GGTCTC	2 cut(s)	901, 1138
Eco32I	GATATC	1 cut(s)	220
Eco47I	GGWCC	2 cut(s)	833, 1077
Eco57I	CTGAAG	2 cut(s)	177, 407
EcoRV	GATATC	1 cut(s)	220
EcoT22I	ATGCAT	1 cut(s)	1102
EcoT38I	GRGCYC	1 cut(s)	907
FaeI	CATG	5 cut(s)	83, 260, 551, 911, 917
FalI	AAGNNNNNCTT	2 cut(s)	710, 742
FatI	CATG	5 cut(s)	79, 256, 547, 907, 913
FbaI	TGATCA	1 cut(s)	537
FblI	GTMKAC	1 cut(s)	690
Fnu4HI	GCNGC	2 cut(s)	168, 171
FriOI	GRGCYC	1 cut(s)	907
Fsp4HI	GCNGC	2 cut(s)	168, 171
GluI	GCNGC	2 cut(s)	168, 171
GsuI	CTGGAG	1 cut(s)	883
HaeIII	GGCC	1 cut(s)	67
HapII	CCGG	3 cut(s)	60, 351, 515
HgaI	GACGC	1 cut(s)	497
Hin1II	CATG	5 cut(s)	83, 260, 551, 911, 917
HinfI	GANTC	1 cut(s)	151
HpaII	CCGG	3 cut(s)	60, 351, 515
Hpy166II	GTNNAC	4 cut(s)	691, 865, 928, 1077
Hpy188I	TCNGA	3 cut(s)	450, 705, 790
Hpy188III	TCNNGA	8 cut(s)	60, 155, 257, 422, 515, 900, 980, 1070
Hpy8I	GTNNAC	4 cut(s)	691, 865, 928, 1077
HpyAV	CCTTC	3 cut(s)	57, 1093, 1141
HpyCH4III	ACNGT	2 cut(s)	364, 837
HpyCH4IV	ACGT	1 cut(s)	693
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
HpySE526I	ACGT	1 cut(s)	693
Hsp92II	CATG	5 cut(s)	83, 260, 551, 911, 917
Kpn2I	TCCGGA	2 cut(s)	59, 514
Ksp22I	TGATCA	1 cut(s)	537
Kzo9I	GATC	7 cut(s)	73, 310, 424, 537, 720, 790, 982
LmnI	GCTCC	2 cut(s)	48, 679
Lsp1109I	GCAGC	2 cut(s)	154, 157
LweI	GCATC	2 cut(s)	1109, 1133
MaeII	ACGT	1 cut(s)	693
MaeIII	GTNAC	2 cut(s)	262, 739
MalI	GATC	7 cut(s)	75, 312, 426, 539, 722, 792, 984
MboI	GATC	7 cut(s)	73, 310, 424, 537, 720, 790, 982
MboII	GAAGA	6 cut(s)	170, 203, 219, 476, 715, 1128
MflI	RGATCY	3 cut(s)	720, 790, 982
MhlI	GDGCHC	2 cut(s)	907, 930
MluCI	AATT	5 cut(s)	584, 729, 780, 868, 1000
MmeI	TCCRAC	3 cut(s)	484, 701, 773
MnlI	CCTC	8 cut(s)	19, 36, 108, 128, 187, 564, 571, 1090
Mph1103I	ATGCAT	1 cut(s)	1102
MroI	TCCGGA	2 cut(s)	59, 514
MroXI	GAANNNNTTC	1 cut(s)	956
MseI	TTAA	4 cut(s)	522, 728, 810, 1011
MslI	CAYNNNNRTG	1 cut(s)	912
MspI	CCGG	3 cut(s)	60, 351, 515
Mva1269I	GAATGC	1 cut(s)	1102
MwoI	GCNNNNNNNGC	1 cut(s)	488
NdeII	GATC	7 cut(s)	73, 310, 424, 537, 720, 790, 982
NlaIII	CATG	5 cut(s)	83, 260, 551, 911, 917
NlaIV	GGNNCC	1 cut(s)	792
NmuCI	GTSAC	1 cut(s)	262
NsiI	ATGCAT	1 cut(s)	1102
NspI	RCATGY	2 cut(s)	83, 551
PaeI	GCATGC	1 cut(s)	83
PagI	TCATGA	1 cut(s)	256
PciI	ACATGT	1 cut(s)	547
PctI	GAATGC	1 cut(s)	1102
PdmI	GAANNNNTTC	1 cut(s)	956
PfeI	GAWTC	1 cut(s)	151
PinAI	ACCGGT	1 cut(s)	350
PkrI	GCNGC	2 cut(s)	169, 172
Ppu21I	YACGTR	1 cut(s)	694
PscI	ACATGT	1 cut(s)	547
PspN4I	GGNNCC	1 cut(s)	792
PspPI	GGNCC	2 cut(s)	833, 1077
PsuI	RGATCY	3 cut(s)	720, 790, 982
RsaI	GTAC	3 cut(s)	470, 608, 998
RsaNI	GTAC	3 cut(s)	469, 607, 997
RseI	CAYNNNNRTG	1 cut(s)	912
SaqAI	TTAA	4 cut(s)	522, 728, 810, 1011
SatI	GCNGC	2 cut(s)	168, 171
Sau3AI	GATC	7 cut(s)	73, 310, 424, 537, 720, 790, 982
Sau96I	GGNCC	2 cut(s)	833, 1077
SduI	GDGCHC	2 cut(s)	907, 930
SfaNI	GCATC	2 cut(s)	1109, 1133
SfcI	CTRYAG	4 cut(s)	101, 849, 858, 920
SinI	GGWCC	2 cut(s)	833, 1077
SmiMI	CAYNNNNRTG	1 cut(s)	912
SnaBI	TACGTA	1 cut(s)	694
SphI	GCATGC	1 cut(s)	83
Sse9I	AATT	5 cut(s)	584, 729, 780, 868, 1000
SsiI	CCGC	1 cut(s)	77
TaaI	ACNGT	2 cut(s)	364, 837
TaiI	ACGT	1 cut(s)	696
TaqI	TCGA	3 cut(s)	72, 133, 1026
TasI	AATT	5 cut(s)	584, 729, 780, 868, 1000
TatI	WGTACW	2 cut(s)	468, 996
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	4 cut(s)	522, 728, 810, 1011
Tru9I	TTAA	4 cut(s)	522, 728, 810, 1011
TscAI	CASTG	2 cut(s)	20, 489
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	2 cut(s)	167, 170
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	5 cut(s)	196, 245, 342, 612, 965
TspGWI	ACGGA	2 cut(s)	230, 624
TspRI	CASTG	2 cut(s)	20, 489
VneI	GTGCAC	1 cut(s)	926
VpaK11BI	GGWCC	2 cut(s)	833, 1077
XapI	RAATTY	1 cut(s)	584
XceI	RCATGY	2 cut(s)	83, 551
XmiI	GTMKAC	1 cut(s)	690
XmnI	GAANNNNTTC	1 cut(s)	956
Zsp2I	ATGCAT	1 cut(s)	1102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.