AT5G08320

E2F-associated phosphoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014441
Physical Location & Seq
Forward (+)
2677037 .. 2678819
1783 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G08320.2

Sequence Viewer

Length: 453 bp
ATGGCTTCTCCGACCAATTCACAGAAAACAGTTTCGGATGACGAGGAAGTTGATTACTCCATCAAACCGGAGTTCTATGATTCAGATATTGATGATAAAGATGAGCTTTGGATGGATAAGAAGAGAGATGGTCGTACTTCTGATGCTCTTCTTAGCTGTCCAGCTTGTTTCACCACTGTCTGCTTAGAGTGTCAGAGGCACGAGCAGTATGTGACACAGTACAGAGCAGTCTTTGTGGTCAATTGCAAAGTAGGTACAGACACAGTTTTGCAACAGAATACAATGCCCTTAAAGGTTGGTAAAAGAAGGAGAGATTCCGAGATGCAAGAAACTGGTTCTGAAGATAGCGAAAAAGTTAACCCGGTCTTTTGCTCAGCTTGTTCCACAGAGATCGGAGTAGTTGACAGTGAAGAGATCTACCATTTCTTTAATGTCATTCCAAGCGAGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Eapp_C

Protein Analysis

150

Amino Acids

17.06

Weight (kDa)

4.47

Isoelectric Point (pI)

68.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Eapp_C PF10238 25 - 67 1.4e-16 E2F-associated phosphoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014441)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08320
fragaria_vesca FvH4_4g06750
malus_domestica MD16G1243400.v1.1
prunus_persica Prupe.1G070600_v2.0.a1
pyrus_communis pycom16g20430
rosa_chinensis RchiOBHm_Chr4g0398681
rosa_laevigata RLG00000009333
rosa_multiflora Rmu_sc0000586.1_g000015 Rmu_sc0008600.1_g000024
rosa_roxburghii Rroxscaffold_5G00343630
rosa_rugosa Rorug04G0010700
rosa_samantha Rh4AG088300 Rh4BG085000 Rh4BG085200 Rh4CG096500 Rh4DG080000
rosa_wichuraiana Rw4G007320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 360
AfaI GTAC 3 cut(s) 136, 221, 256
AluBI AGCT 4 cut(s) 106, 156, 164, 377
AluI AGCT 4 cut(s) 106, 156, 164, 377
AsuC2I CCSGG 1 cut(s) 362
AsuHPI GGTGA 1 cut(s) 163
BauI CACGAG 1 cut(s) 200
BccI CCATC 3 cut(s) 68, 106, 122
BcnI CCSGG 1 cut(s) 362
BglII AGATCT 1 cut(s) 414
BlpI GCTNAGC 1 cut(s) 373
Bme1390I CCNGG 1 cut(s) 362
BmrFI CCNGG 1 cut(s) 362
BmsI GCATC 2 cut(s) 133, 312
Bpu1102I GCTNAGC 1 cut(s) 373
BpuMI CCSGG 1 cut(s) 362
BsaWI WCCGGW 1 cut(s) 67
Bse1I ACTGG 1 cut(s) 337
BseGI GGATG 2 cut(s) 43, 117
BseMII CTCAG 1 cut(s) 387
BseNI ACTGG 1 cut(s) 337
BsiSI CCGG 2 cut(s) 68, 362
Bsp143I GATC 2 cut(s) 390, 414
Bsp1720I GCTNAGC 1 cut(s) 373
BspCNI CTCAG 1 cut(s) 386
BspQI GCTCTTC 1 cut(s) 153
BsrI ACTGG 1 cut(s) 337
BssMI GATC 2 cut(s) 390, 414
BssSI CACGAG 1 cut(s) 200
Bst2BI CACGAG 1 cut(s) 200
Bst4CI ACNGT 5 cut(s) 31, 178, 219, 265, 407
Bst6I CTCTTC 3 cut(s) 116, 153, 405
BstC8I GCNNGC 1 cut(s) 446
BstDEI CTNAG 3 cut(s) 152, 184, 373
BstF5I GGATG 2 cut(s) 43, 117
BstKTI GATC 2 cut(s) 393, 417
BstMBI GATC 2 cut(s) 390, 414
BstSCI CCNGG 1 cut(s) 360
BstX2I RGATCY 1 cut(s) 414
BstYI RGATCY 1 cut(s) 414
BtsCI GGATG 2 cut(s) 43, 117
BtsIMutI CAGTG 2 cut(s) 174, 412
Cac8I GCNNGC 1 cut(s) 446
Csp6I GTAC 3 cut(s) 135, 220, 255
CviJI RGCY 6 cut(s) 5, 106, 156, 164, 377, 448
CviKI_1 RGCY 6 cut(s) 5, 106, 156, 164, 377, 448
CviQI GTAC 3 cut(s) 135, 220, 255
DdeI CTNAG 3 cut(s) 152, 184, 373
DpnI GATC 2 cut(s) 392, 416
DpnII GATC 2 cut(s) 390, 414
Eam1104I CTCTTC 3 cut(s) 116, 153, 405
EarI CTCTTC 3 cut(s) 116, 153, 405
Eco57I CTGAAG 1 cut(s) 360
FaiI YATR 2 cut(s) 78, 210
FalI AAGNNNNNCTT 3 cut(s) 90, 122, 433
FokI GGATG 2 cut(s) 50, 124
HapII CCGG 2 cut(s) 68, 362
HincII GTYRAC 2 cut(s) 358, 403
HindII GTYRAC 2 cut(s) 358, 403
HinfI GANTC 2 cut(s) 80, 314
HpaI GTTAAC 1 cut(s) 358
HpaII CCGG 2 cut(s) 68, 362
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 2 cut(s) 358, 403
Hpy188I TCNGA 8 cut(s) 12, 37, 85, 142, 195, 319, 340, 395
Hpy8I GTNNAC 2 cut(s) 358, 403
HpyAV CCTTC 1 cut(s) 300
HpyCH4III ACNGT 5 cut(s) 31, 178, 219, 265, 407
HpyCH4V TGCA 3 cut(s) 246, 271, 325
HpyF3I CTNAG 3 cut(s) 152, 184, 373
KspAI GTTAAC 1 cut(s) 358
Kzo9I GATC 2 cut(s) 390, 414
LguI GCTCTTC 1 cut(s) 153
LpnPI CCDG 4 cut(s) 81, 174, 318, 375
LweI GCATC 2 cut(s) 133, 312
MaeIII GTNAC 1 cut(s) 211
MalI GATC 2 cut(s) 392, 416
MboI GATC 2 cut(s) 390, 414
MboII GAAGA 4 cut(s) 133, 140, 353, 422
MfeI CAATTG 1 cut(s) 241
MflI RGATCY 1 cut(s) 414
MluCI AATT 2 cut(s) 16, 241
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 2 cut(s) 37, 189
MseI TTAA 4 cut(s) 290, 357, 429, 451
MspI CCGG 2 cut(s) 68, 362
MspR9I CCNGG 1 cut(s) 362
MunI CAATTG 1 cut(s) 241
NciI CCSGG 1 cut(s) 362
NdeII GATC 2 cut(s) 390, 414
NmuCI GTSAC 1 cut(s) 211
PciSI GCTCTTC 1 cut(s) 153
PfeI GAWTC 2 cut(s) 80, 314
PsuI RGATCY 1 cut(s) 414
RsaI GTAC 3 cut(s) 136, 221, 256
RsaNI GTAC 3 cut(s) 135, 220, 255
SapI GCTCTTC 1 cut(s) 153
SaqAI TTAA 4 cut(s) 290, 357, 429, 451
Sau3AI GATC 2 cut(s) 390, 414
ScrFI CCNGG 1 cut(s) 362
SetI ASST 6 cut(s) 108, 158, 166, 256, 297, 379
SfaNI GCATC 2 cut(s) 133, 312
Sse9I AATT 2 cut(s) 16, 241
StyD4I CCNGG 1 cut(s) 360
TaaI ACNGT 5 cut(s) 31, 178, 219, 265, 407
TasI AATT 2 cut(s) 16, 241
TatI WGTACW 1 cut(s) 219
TfiI GAWTC 2 cut(s) 80, 314
Tru1I TTAA 4 cut(s) 290, 357, 429, 451
Tru9I TTAA 4 cut(s) 290, 357, 429, 451
TscAI CASTG 2 cut(s) 181, 412
TseFI GTSAC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 211
TspRI CASTG 2 cut(s) 181, 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.