Rh4AG088300

E2F-associated phosphoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0014441
Physical Location & Seq
Reverse (-)
18457509 .. 18460521
3013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG088300.1

Sequence Viewer

Length: 486 bp
ATGGACGGGCACGATGATGAAATGAAAGACAATATGCCCTCTCCAACCAATTCTCAGAAAACTGTTTCTGATGATGATGAAATAGACTACTCCGTCAAGCCAGAGTTCTATGATTCAGACCTTGATGTAAAAGATGAGTCATGGGTTCAAAAGAAAAGGAAAGGGCGTGCTTCTGATGCTGTCCTTAGTTGTCCAGCTTGTTTCACCACACTGTGCCTCGAGTGTCAGAGGCATGAAAAATATGTGACACAGTACAGAGCAGTTTTTGTTGTTAACTGCAAAATTGGAAGTGATCAAGTGATCCACCAAAAAGGCACAAAACCAAGAAAGGGCAAAAGTGGGAGACAATCTTCTGAGATTGAAACAGTCCCTGCTGGAAACCAAACCTTCAAGCACGTCAGCTGCTTAGTTTGCTCAACAGAGGTAGGCGTAATTGATGAGGACGAAGTTTATCATTTCTTCAATGTTCTTCCTAGTGAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Eapp_C

Protein Analysis

161

Amino Acids

18.15

Weight (kDa)

5.09

Isoelectric Point (pI)

51.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Eapp_C PF10238 36 - 159 2.2e-48 E2F-associated phosphoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014441)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08320
fragaria_vesca FvH4_4g06750
malus_domestica MD16G1243400.v1.1
prunus_persica Prupe.1G070600_v2.0.a1
pyrus_communis pycom16g20430
rosa_chinensis RchiOBHm_Chr4g0398681
rosa_laevigata RLG00000009333
rosa_multiflora Rmu_sc0000586.1_g000015 Rmu_sc0008600.1_g000024
rosa_roxburghii Rroxscaffold_5G00343630
rosa_rugosa Rorug04G0010700
rosa_samantha Rh4AG088300 Rh4BG085000 Rh4BG085200 Rh4CG096500 Rh4DG080000
rosa_wichuraiana Rw4G007320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
AclWI GGATC 1 cut(s) 295
AdeI CACNNNGTG 1 cut(s) 213
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 1 cut(s) 329
AgsI TTSAA 4 cut(s) 149, 362, 391, 463
AjiI CACGTC 1 cut(s) 397
AluBI AGCT 2 cut(s) 197, 402
AluI AGCT 2 cut(s) 197, 402
Alw26I GTCTC 1 cut(s) 337
AlwI GGATC 1 cut(s) 295
AlwNI CAGNNNCTG 1 cut(s) 371
Ama87I CYCGRG 1 cut(s) 218
ApeKI GCWGC 1 cut(s) 402
AsuHPI GGTGA 1 cut(s) 196
AvaI CYCGRG 1 cut(s) 218
BaeGI GKGCMC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 389
BclI TGATCA 1 cut(s) 292
BcoDI GTCTC 1 cut(s) 337
BfaI CTAG 1 cut(s) 474
BisI GCNGC 1 cut(s) 403
BlsI GCNGC 1 cut(s) 404
BmeT110I CYCGRG 1 cut(s) 218
BmgBI CACGTC 1 cut(s) 397
BmsI GCATC 1 cut(s) 166
Bsc4I CCNNNNNNNGG 1 cut(s) 329
BseLI CCNNNNNNNGG 1 cut(s) 329
BseMII CTCAG 2 cut(s) 68, 345
BseSI GKGCMC 1 cut(s) 12
BseXI GCAGC 1 cut(s) 389
BsiHKCI CYCGRG 1 cut(s) 218
BslFI GGGAC 1 cut(s) 353
BslI CCNNNNNNNGG 1 cut(s) 329
BsmAI GTCTC 1 cut(s) 337
BsmFI GGGAC 1 cut(s) 353
BsoBI CYCGRG 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 2 cut(s) 292, 300
BspCNI CTCAG 2 cut(s) 67, 346
BspPI GGATC 1 cut(s) 295
BssMI GATC 2 cut(s) 292, 300
Bst4CI ACNGT 4 cut(s) 64, 213, 252, 367
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 4 cut(s) 54, 185, 354, 406
BstKTI GATC 2 cut(s) 295, 303
BstMAI GTCTC 1 cut(s) 337
BstMBI GATC 2 cut(s) 292, 300
BstMWI GCNNNNNNNGC 2 cut(s) 176, 411
BstSLI GKGCMC 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 389
BtrI CACGTC 1 cut(s) 397
BtsIMutI CAGTG 1 cut(s) 209
Cac8I GCNNGC 1 cut(s) 168
CaiI CAGNNNCTG 1 cut(s) 371
Csp6I GTAC 1 cut(s) 253
CviAII CATG 2 cut(s) 141, 233
CviJI RGCY 3 cut(s) 100, 197, 402
CviKI_1 RGCY 3 cut(s) 100, 197, 402
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 4 cut(s) 54, 185, 354, 406
DpnI GATC 2 cut(s) 294, 302
DpnII GATC 2 cut(s) 292, 300
DraIII CACNNNGTG 1 cut(s) 213
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
Eco88I CYCGRG 1 cut(s) 218
FaeI CATG 2 cut(s) 144, 236
FaiI YATR 5 cut(s) 35, 111, 142, 234, 243
FaqI GGGAC 1 cut(s) 353
FatI CATG 2 cut(s) 140, 232
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 1 cut(s) 403
Fsp4HI GCNGC 1 cut(s) 403
FspBI CTAG 1 cut(s) 474
GluI GCNGC 1 cut(s) 403
Hin1II CATG 2 cut(s) 144, 236
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HinfI GANTC 3 cut(s) 113, 137, 479
HpaI GTTAAC 1 cut(s) 274
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 6 cut(s) 57, 70, 118, 175, 228, 355
Hpy188III TCNNGA 1 cut(s) 483
Hpy8I GTNNAC 1 cut(s) 274
HpyAV CCTTC 1 cut(s) 397
HpyCH4III ACNGT 4 cut(s) 64, 213, 252, 367
HpyCH4IV ACGT 1 cut(s) 396
HpyCH4V TGCA 1 cut(s) 279
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 411
HpyF3I CTNAG 4 cut(s) 54, 185, 354, 406
HpySE526I ACGT 1 cut(s) 396
Hsp92II CATG 2 cut(s) 144, 236
Ksp22I TGATCA 1 cut(s) 292
KspAI GTTAAC 1 cut(s) 274
Kzo9I GATC 2 cut(s) 292, 300
LpnPI CCDG 4 cut(s) 114, 207, 360, 384
Lsp1109I GCAGC 1 cut(s) 389
LweI GCATC 1 cut(s) 166
MaeI CTAG 1 cut(s) 474
MaeII ACGT 1 cut(s) 396
MaeIII GTNAC 1 cut(s) 244
MalI GATC 2 cut(s) 294, 302
MboI GATC 2 cut(s) 292, 300
MboII GAAGA 3 cut(s) 342, 451, 461
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 3 cut(s) 49, 282, 432
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 5 cut(s) 49, 222, 227, 415, 433
MseI TTAA 1 cut(s) 273
MslI CAYNNNNRTG 1 cut(s) 15
MspA1I CMGCKG 1 cut(s) 402
MwoI GCNNNNNNNGC 2 cut(s) 176, 411
NdeII GATC 2 cut(s) 292, 300
NlaIII CATG 2 cut(s) 144, 236
NmuCI GTSAC 1 cut(s) 244
PaeR7I CTCGAG 1 cut(s) 218
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 1 cut(s) 404
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
PspXI VCTCGAGB 1 cut(s) 218
PstNI CAGNNNCTG 1 cut(s) 371
PvuII CAGCTG 1 cut(s) 402
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 1 cut(s) 403
Sau3AI GATC 2 cut(s) 292, 300
SchI GAGTC 1 cut(s) 146
SduI GDGCHC 1 cut(s) 12
SetI ASST 6 cut(s) 123, 199, 389, 399, 404, 426
SfaNI GCATC 1 cut(s) 166
Sfr274I CTCGAG 1 cut(s) 218
SlaI CTCGAG 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 3 cut(s) 49, 282, 432
SspMI CTAG 1 cut(s) 474
TaaI ACNGT 4 cut(s) 64, 213, 252, 367
TaiI ACGT 1 cut(s) 399
TaqI TCGA 1 cut(s) 219
TasI AATT 3 cut(s) 49, 282, 432
TatI WGTACW 1 cut(s) 252
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 1 cut(s) 402
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 4 cut(s) 33, 38, 93, 249
TspGWI ACGGA 1 cut(s) 82
TspRI CASTG 1 cut(s) 216
XhoI CTCGAG 1 cut(s) 218
XspI CTAG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.