Rroxscaffold_5G00343630

E2F-associated phosphoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0014441
Physical Location & Seq
Reverse (-)
13163311 .. 13165981
2671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00343630.1

Sequence Viewer

Length: 549 bp
ATGGACGGGCACGATGATGAAATGAAAGACAACATGCCCTCTCCAACCAATTCTCAGAAAACTGGTAATCTTCTCCACCCCACTTTGGTTTTGGGTATTGATAATTTCAACATGTTGTGTATTTCAGTTTCTGATGATGAAGAAATAGACTACTCCATCAAGCCAGAGTTCTATGATTCAGACCTTGATGTAAAAGATGAGTCATGGGTTCAAAAGAAAAGGAAGGGGCGTGCTTCTGATGCTGTCCTTAGTTGTCCAGCTTGTTTCACCACACTGTGCCTCGAGTGTCAGAGGCATGAAAAATATGTGACACAGTACAGAGCAGTTTTTGTTGTTAACTGCAAAATTGGAAGTGATCAAGTGATCCACCAAAAAGGCACAAAACCAAGAAAGGGCAAAAGTGGGAGACAATCTTCTGAGATTGAAACAGTCCCTGCTGGAAACCAAACCTTCAAGCACGTCAGCTGCTTAGTTTGCTCAACAGAGGTAGGCGTAATTGACGAGGACGAAGTTTATCATTTCTTCAATGTTCTTCCTAGTGAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Eapp_C

Protein Analysis

182

Amino Acids

20.44

Weight (kDa)

5.1

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Eapp_C PF10238 57 - 180 3.3e-48 E2F-associated phosphoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014441)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08320
fragaria_vesca FvH4_4g06750
malus_domestica MD16G1243400.v1.1
prunus_persica Prupe.1G070600_v2.0.a1
pyrus_communis pycom16g20430
rosa_chinensis RchiOBHm_Chr4g0398681
rosa_laevigata RLG00000009333
rosa_multiflora Rmu_sc0000586.1_g000015 Rmu_sc0008600.1_g000024
rosa_roxburghii Rroxscaffold_5G00343630
rosa_rugosa Rorug04G0010700
rosa_samantha Rh4AG088300 Rh4BG085000 Rh4BG085200 Rh4CG096500 Rh4DG080000
rosa_wichuraiana Rw4G007320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 358
AdeI CACNNNGTG 1 cut(s) 276
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 2 cut(s) 85, 392
AflIII ACRYGT 1 cut(s) 111
AgsI TTSAA 5 cut(s) 109, 212, 425, 454, 526
AjiI CACGTC 1 cut(s) 460
AluBI AGCT 2 cut(s) 260, 465
AluI AGCT 2 cut(s) 260, 465
Alw26I GTCTC 1 cut(s) 400
AlwI GGATC 1 cut(s) 358
AlwNI CAGNNNCTG 2 cut(s) 131, 434
Ama87I CYCGRG 1 cut(s) 281
ApeKI GCWGC 1 cut(s) 465
AsuHPI GGTGA 1 cut(s) 259
AvaI CYCGRG 1 cut(s) 281
BaeGI GKGCMC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 452
BccI CCATC 1 cut(s) 164
BclI TGATCA 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 400
BfaI CTAG 1 cut(s) 537
BisI GCNGC 1 cut(s) 466
BlsI GCNGC 1 cut(s) 467
BmeT110I CYCGRG 1 cut(s) 281
BmgBI CACGTC 1 cut(s) 460
BmsI GCATC 1 cut(s) 229
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 392
Bse1I ACTGG 1 cut(s) 67
BseLI CCNNNNNNNGG 2 cut(s) 85, 392
BseMII CTCAG 2 cut(s) 68, 408
BseNI ACTGG 1 cut(s) 67
BseSI GKGCMC 1 cut(s) 12
BseXI GCAGC 1 cut(s) 452
BsiHKCI CYCGRG 1 cut(s) 281
BslFI GGGAC 1 cut(s) 416
BslI CCNNNNNNNGG 2 cut(s) 85, 392
BsmAI GTCTC 1 cut(s) 400
BsmFI GGGAC 1 cut(s) 416
BsoBI CYCGRG 1 cut(s) 281
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 2 cut(s) 355, 363
BspCNI CTCAG 2 cut(s) 67, 409
BspPI GGATC 1 cut(s) 358
BsrI ACTGG 1 cut(s) 67
BssMI GATC 2 cut(s) 355, 363
Bst4CI ACNGT 3 cut(s) 276, 315, 430
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 4 cut(s) 54, 248, 417, 469
BstKTI GATC 2 cut(s) 358, 366
BstMAI GTCTC 1 cut(s) 400
BstMBI GATC 2 cut(s) 355, 363
BstMWI GCNNNNNNNGC 2 cut(s) 239, 474
BstNSI RCATGY 2 cut(s) 37, 115
BstSLI GKGCMC 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 452
BtrI CACGTC 1 cut(s) 460
BtsIMutI CAGTG 1 cut(s) 272
Cac8I GCNNGC 1 cut(s) 231
CaiI CAGNNNCTG 2 cut(s) 131, 434
Csp6I GTAC 1 cut(s) 316
CviAII CATG 4 cut(s) 34, 112, 204, 296
CviJI RGCY 3 cut(s) 163, 260, 465
CviKI_1 RGCY 3 cut(s) 163, 260, 465
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 4 cut(s) 54, 248, 417, 469
DpnI GATC 2 cut(s) 357, 365
DpnII GATC 2 cut(s) 355, 363
DraIII CACNNNGTG 1 cut(s) 276
Eco88I CYCGRG 1 cut(s) 281
FaeI CATG 4 cut(s) 37, 115, 207, 299
FaiI YATR 6 cut(s) 35, 113, 174, 205, 297, 306
FaqI GGGAC 1 cut(s) 416
FatI CATG 4 cut(s) 33, 111, 203, 295
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 1 cut(s) 466
Fsp4HI GCNGC 1 cut(s) 466
FspBI CTAG 1 cut(s) 537
GluI GCNGC 1 cut(s) 466
Hin1II CATG 4 cut(s) 37, 115, 207, 299
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HinfI GANTC 3 cut(s) 176, 200, 542
HpaI GTTAAC 1 cut(s) 337
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 6 cut(s) 57, 133, 181, 238, 291, 418
Hpy188III TCNNGA 1 cut(s) 546
Hpy8I GTNNAC 1 cut(s) 337
HpyAV CCTTC 2 cut(s) 217, 460
HpyCH4III ACNGT 3 cut(s) 276, 315, 430
HpyCH4IV ACGT 1 cut(s) 459
HpyCH4V TGCA 1 cut(s) 342
HpyF10VI GCNNNNNNNGC 2 cut(s) 239, 474
HpyF3I CTNAG 4 cut(s) 54, 248, 417, 469
HpySE526I ACGT 1 cut(s) 459
Hsp92II CATG 4 cut(s) 37, 115, 207, 299
Ksp22I TGATCA 1 cut(s) 355
KspAI GTTAAC 1 cut(s) 337
Kzo9I GATC 2 cut(s) 355, 363
LpnPI CCDG 5 cut(s) 48, 177, 270, 423, 447
Lsp1109I GCAGC 1 cut(s) 452
LweI GCATC 1 cut(s) 229
MaeI CTAG 1 cut(s) 537
MaeII ACGT 1 cut(s) 459
MaeIII GTNAC 1 cut(s) 307
MalI GATC 2 cut(s) 357, 365
MboI GATC 2 cut(s) 355, 363
MboII GAAGA 5 cut(s) 62, 152, 405, 514, 524
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 4 cut(s) 49, 103, 345, 495
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 5 cut(s) 49, 285, 290, 478, 496
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 1 cut(s) 15
MspA1I CMGCKG 1 cut(s) 465
MwoI GCNNNNNNNGC 2 cut(s) 239, 474
NdeII GATC 2 cut(s) 355, 363
NlaIII CATG 4 cut(s) 37, 115, 207, 299
NmuCI GTSAC 1 cut(s) 307
NspI RCATGY 2 cut(s) 37, 115
PaeR7I CTCGAG 1 cut(s) 281
PciI ACATGT 1 cut(s) 111
PfeI GAWTC 1 cut(s) 176
PkrI GCNGC 1 cut(s) 467
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PscI ACATGT 1 cut(s) 111
PspXI VCTCGAGB 1 cut(s) 281
PstNI CAGNNNCTG 2 cut(s) 131, 434
PvuII CAGCTG 1 cut(s) 465
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 1 cut(s) 466
Sau3AI GATC 2 cut(s) 355, 363
SchI GAGTC 1 cut(s) 209
SduI GDGCHC 1 cut(s) 12
SetI ASST 6 cut(s) 186, 262, 452, 462, 467, 489
SfaNI GCATC 1 cut(s) 229
Sfr274I CTCGAG 1 cut(s) 281
SlaI CTCGAG 1 cut(s) 281
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 4 cut(s) 49, 103, 345, 495
SspMI CTAG 1 cut(s) 537
TaaI ACNGT 3 cut(s) 276, 315, 430
TaiI ACGT 1 cut(s) 462
TaqI TCGA 1 cut(s) 282
TasI AATT 4 cut(s) 49, 103, 345, 495
TatI WGTACW 1 cut(s) 315
TfiI GAWTC 1 cut(s) 176
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 1 cut(s) 465
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 4 cut(s) 33, 38, 153, 312
TspRI CASTG 1 cut(s) 279
XceI RCATGY 2 cut(s) 37, 115
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
XhoI CTCGAG 1 cut(s) 281
XspI CTAG 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.