Rh4BG085000

E2F-associated phosphoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0014441
Physical Location & Seq
Reverse (-)
14664126 .. 14667732
3607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG085000.1

Sequence Viewer

Length: 522 bp
ATGGACGGGCACGATGATGAAATGAAAGACAATATGCCCTCTCCAACCAATTCTCAGAAAACTGTTTCTGATGATGAAGAAATAGACTACTCCCTCAAGCCAGAGTTCTATGATTCAGACCTTGATGTAAAAGATGAGTCATGGGTTCAAAAGAAAAGGAATGGGCGTGCTTCTGATGCTGTCCTTAGTTGTCCAGCTTGTTTCACCACACTGTGCCTCGAGTGTCAGAGGCATGAAAAATATGTGACACAGTACAGAGCAGTTTTTGTTGTTAACTGCAAAATTGGAAGTGATCAAGTGATCCACCAAAAAGGCACAAAACCAAGAAAGGGCAAAAGTGGGAGACAATCTTCTGAGATTGAAACACTCCCTGCTGGAAACCAAACCTTCAAGCACGTCAGCTGCTTAGTTTGCTCAACAGAGCGACTGCCTGATGTGCCAAACTGTGGTTGGGTTCTCCCGGGAAAACTTGGTGGCAAATCCACCTTTTTGAATCCAGAATCAAAGACTAAAACAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Eapp_C

Protein Analysis

173

Amino Acids

19.33

Weight (kDa)

6.42

Isoelectric Point (pI)

51.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Eapp_C PF10238 36 - 141 3e-35 E2F-associated phosphoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014441)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08320
fragaria_vesca FvH4_4g06750
malus_domestica MD16G1243400.v1.1
prunus_persica Prupe.1G070600_v2.0.a1
pyrus_communis pycom16g20430
rosa_chinensis RchiOBHm_Chr4g0398681
rosa_laevigata RLG00000009333
rosa_multiflora Rmu_sc0000586.1_g000015 Rmu_sc0008600.1_g000024
rosa_roxburghii Rroxscaffold_5G00343630
rosa_rugosa Rorug04G0010700
rosa_samantha Rh4AG088300 Rh4BG085000 Rh4BG085200 Rh4CG096500 Rh4DG080000
rosa_wichuraiana Rw4G007320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 446
AclWI GGATC 1 cut(s) 295
AdeI CACNNNGTG 1 cut(s) 213
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 2 cut(s) 329, 446
AgsI TTSAA 4 cut(s) 149, 362, 391, 493
AjiI CACGTC 1 cut(s) 397
AluBI AGCT 2 cut(s) 197, 402
AluI AGCT 2 cut(s) 197, 402
Alw26I GTCTC 1 cut(s) 337
AlwI GGATC 1 cut(s) 295
Ama87I CYCGRG 2 cut(s) 218, 460
ApeKI GCWGC 1 cut(s) 402
AsuC2I CCSGG 2 cut(s) 461, 462
AsuHPI GGTGA 1 cut(s) 196
AvaI CYCGRG 2 cut(s) 218, 460
BaeGI GKGCMC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 389
BclI TGATCA 1 cut(s) 292
BcnI CCSGG 2 cut(s) 461, 462
BcoDI GTCTC 1 cut(s) 337
BisI GCNGC 1 cut(s) 403
BlsI GCNGC 1 cut(s) 404
Bme1390I CCNGG 2 cut(s) 461, 462
BmeT110I CYCGRG 2 cut(s) 218, 460
BmgBI CACGTC 1 cut(s) 397
BmrFI CCNGG 2 cut(s) 461, 462
BmsI GCATC 1 cut(s) 166
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 2 cut(s) 461, 462
BsaJI CCNNGG 1 cut(s) 460
Bsc4I CCNNNNNNNGG 2 cut(s) 329, 446
BseDI CCNNGG 1 cut(s) 460
BseLI CCNNNNNNNGG 2 cut(s) 329, 446
BseMII CTCAG 2 cut(s) 68, 345
BseSI GKGCMC 1 cut(s) 12
BseXI GCAGC 1 cut(s) 389
BsiHKCI CYCGRG 2 cut(s) 218, 460
BsiSI CCGG 1 cut(s) 461
BslI CCNNNNNNNGG 2 cut(s) 329, 446
BsmAI GTCTC 1 cut(s) 337
BsoBI CYCGRG 2 cut(s) 218, 460
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 2 cut(s) 292, 300
BspCNI CTCAG 2 cut(s) 67, 346
BspPI GGATC 1 cut(s) 295
BssECI CCNNGG 1 cut(s) 460
BssMI GATC 2 cut(s) 292, 300
Bst4CI ACNGT 4 cut(s) 64, 213, 252, 446
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 4 cut(s) 54, 185, 354, 406
BstKTI GATC 2 cut(s) 295, 303
BstMAI GTCTC 1 cut(s) 337
BstMBI GATC 2 cut(s) 292, 300
BstMWI GCNNNNNNNGC 3 cut(s) 176, 411, 436
BstSCI CCNGG 2 cut(s) 459, 460
BstSLI GKGCMC 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 389
BtrI CACGTC 1 cut(s) 397
BtsIMutI CAGTG 1 cut(s) 209
Cac8I GCNNGC 1 cut(s) 168
Cfr9I CCCGGG 1 cut(s) 460
Csp6I GTAC 1 cut(s) 253
CviAII CATG 2 cut(s) 141, 233
CviJI RGCY 3 cut(s) 100, 197, 402
CviKI_1 RGCY 3 cut(s) 100, 197, 402
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 4 cut(s) 54, 185, 354, 406
DpnI GATC 2 cut(s) 294, 302
DpnII GATC 2 cut(s) 292, 300
DraIII CACNNNGTG 1 cut(s) 213
Eco88I CYCGRG 2 cut(s) 218, 460
FaeI CATG 2 cut(s) 144, 236
FaiI YATR 6 cut(s) 35, 111, 142, 234, 243, 520
FatI CATG 2 cut(s) 140, 232
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 1 cut(s) 403
Fsp4HI GCNGC 1 cut(s) 403
GluI GCNGC 1 cut(s) 403
HapII CCGG 1 cut(s) 461
Hin1II CATG 2 cut(s) 144, 236
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HinfI GANTC 4 cut(s) 113, 137, 493, 500
HpaI GTTAAC 1 cut(s) 274
HpaII CCGG 1 cut(s) 461
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 6 cut(s) 57, 70, 118, 175, 228, 355
Hpy188III TCNNGA 1 cut(s) 497
Hpy8I GTNNAC 1 cut(s) 274
HpyAV CCTTC 1 cut(s) 397
HpyCH4III ACNGT 4 cut(s) 64, 213, 252, 446
HpyCH4IV ACGT 1 cut(s) 396
HpyCH4V TGCA 1 cut(s) 279
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 411, 436
HpyF3I CTNAG 4 cut(s) 54, 185, 354, 406
HpySE526I ACGT 1 cut(s) 396
Hsp92II CATG 2 cut(s) 144, 236
Ksp22I TGATCA 1 cut(s) 292
KspAI GTTAAC 1 cut(s) 274
Kzo9I GATC 2 cut(s) 292, 300
LpnPI CCDG 7 cut(s) 114, 207, 360, 384, 444, 474, 510
Lsp1109I GCAGC 1 cut(s) 389
LweI GCATC 1 cut(s) 166
MaeII ACGT 1 cut(s) 396
MaeIII GTNAC 1 cut(s) 244
MalI GATC 2 cut(s) 294, 302
MboI GATC 2 cut(s) 292, 300
MboII GAAGA 2 cut(s) 89, 342
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 2 cut(s) 49, 282
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 4 cut(s) 49, 104, 222, 227
MseI TTAA 1 cut(s) 273
MslI CAYNNNNRTG 1 cut(s) 15
MspA1I CMGCKG 1 cut(s) 402
MspI CCGG 1 cut(s) 461
MspR9I CCNGG 2 cut(s) 461, 462
MwoI GCNNNNNNNGC 3 cut(s) 176, 411, 436
NciI CCSGG 2 cut(s) 461, 462
NdeII GATC 2 cut(s) 292, 300
NlaIII CATG 2 cut(s) 144, 236
NmuCI GTSAC 1 cut(s) 244
PaeR7I CTCGAG 1 cut(s) 218
PfeI GAWTC 3 cut(s) 113, 493, 500
PflMI CCANNNNNTGG 1 cut(s) 446
PkrI GCNGC 1 cut(s) 404
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
PspXI VCTCGAGB 1 cut(s) 218
PvuII CAGCTG 1 cut(s) 402
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 1 cut(s) 403
Sau3AI GATC 2 cut(s) 292, 300
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 2 cut(s) 461, 462
SduI GDGCHC 1 cut(s) 12
SetI ASST 6 cut(s) 123, 199, 389, 399, 404, 488
SfaNI GCATC 1 cut(s) 166
Sfr274I CTCGAG 1 cut(s) 218
SlaI CTCGAG 1 cut(s) 218
SmaI CCCGGG 1 cut(s) 462
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 2 cut(s) 95, 218
SmoI CTYRAG 2 cut(s) 95, 218
Sse9I AATT 2 cut(s) 49, 282
StyD4I CCNGG 2 cut(s) 459, 460
TaaI ACNGT 4 cut(s) 64, 213, 252, 446
TaiI ACGT 1 cut(s) 399
TaqI TCGA 1 cut(s) 219
TasI AATT 2 cut(s) 49, 282
TatI WGTACW 1 cut(s) 252
TfiI GAWTC 3 cut(s) 113, 493, 500
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 1 cut(s) 402
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 4 cut(s) 33, 38, 90, 249
TspMI CCCGGG 1 cut(s) 460
TspRI CASTG 1 cut(s) 216
Van91I CCANNNNNTGG 1 cut(s) 446
XcmI CCANNNNNNNNNTGG 1 cut(s) 447
XhoI CTCGAG 1 cut(s) 218
XmaI CCCGGG 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.