FvH4_4g06750

E2F-associated phosphoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014441
Physical Location & Seq
Reverse (-)
6081615 .. 6083980
2366 bp
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UTR
Exon/CDS
Intron
FvH4_4g06750.t1

Sequence Viewer

Length: 486 bp
ATGGATGGGCACGATGATGAAATAAAAGAAAATTTGGCCTCTCCGACCAATTCTCAGAAAACCGTTTCTGATGATGAAGAAATAGACTACTCCATCAAACCAGAGTTCTATGATTCAGATCTTGATGTGAAAGATGAGTTGTGGGTTCAAAAGAAAAGGAAAAGTCGTGCTTCTGATGCCGTCCTCAGCTGTCCAGCTTGCTTCACCACACTGTGTCTGGAATGTCAGAGGCATGAAAAATATGTGACACAGTACAGAGCGGTTTTTGTTGCTAACTGCAAAATTGGACGTGATCAAGTGATCCACCAAAAAGGCGCAAAACCAAGAAGGGGCAAAAGTGGGAGACAATCTTCTGAGATTGAATCAGTCCCTGCTGGAAACCAAACTGTCAAGCAAGTCTGCTGCTTAGTTTGCTCAACAGAGGTAGGCATAATTGATGAGGATGAAGTTTATCATTTCTTCAATGTTCTTCCCAGCGAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Eapp_C

Protein Analysis

162

Amino Acids

18.18

Weight (kDa)

5.13

Isoelectric Point (pI)

55.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Eapp_C PF10238 36 - 159 1.7e-47 E2F-associated phosphoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014441)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08320
fragaria_vesca FvH4_4g06750
malus_domestica MD16G1243400.v1.1
prunus_persica Prupe.1G070600_v2.0.a1
pyrus_communis pycom16g20430
rosa_chinensis RchiOBHm_Chr4g0398681
rosa_laevigata RLG00000009333
rosa_multiflora Rmu_sc0000586.1_g000015 Rmu_sc0008600.1_g000024
rosa_roxburghii Rroxscaffold_5G00343630
rosa_rugosa Rorug04G0010700
rosa_samantha Rh4AG088300 Rh4BG085000 Rh4BG085200 Rh4CG096500 Rh4DG080000
rosa_wichuraiana Rw4G007320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 260
AciI CCGC 1 cut(s) 260
AclWI GGATC 1 cut(s) 295
AcsI RAATTY 1 cut(s) 31
AdeI CACNNNGTG 1 cut(s) 213
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 1 cut(s) 329
AgsI TTSAA 3 cut(s) 149, 362, 463
AjiI CACGTC 1 cut(s) 290
AluBI AGCT 2 cut(s) 189, 197
AluI AGCT 2 cut(s) 189, 197
Alw26I GTCTC 1 cut(s) 337
AlwI GGATC 1 cut(s) 295
AlwNI CAGNNNCTG 1 cut(s) 371
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 1 cut(s) 402
ApoI RAATTY 1 cut(s) 31
AspLEI GCGC 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 196
BaeGI GKGCMC 1 cut(s) 12
BbvCI CCTCAGC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 389
BccI CCATC 1 cut(s) 101
BceAI ACGGC 1 cut(s) 164
BclI TGATCA 1 cut(s) 292
BcoDI GTCTC 1 cut(s) 337
BglII AGATCT 1 cut(s) 118
BisI GCNGC 1 cut(s) 403
BlsI GCNGC 1 cut(s) 404
BmgBI CACGTC 1 cut(s) 290
BmsI GCATC 1 cut(s) 166
Bpu10I CCTNAGC 1 cut(s) 185
BsaBI GATNNNNATC 1 cut(s) 117
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse8I GATNNNNATC 1 cut(s) 117
BseGI GGATG 2 cut(s) 10, 448
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 329
BseMII CTCAG 3 cut(s) 68, 199, 345
BseSI GKGCMC 1 cut(s) 12
BseXI GCAGC 1 cut(s) 389
BseYI CCCAGC 1 cut(s) 473
BshFI GGCC 1 cut(s) 38
BslFI GGGAC 1 cut(s) 353
BslI CCNNNNNNNGG 1 cut(s) 329
BsmAI GTCTC 1 cut(s) 337
BsmFI GGGAC 1 cut(s) 353
BsnI GGCC 1 cut(s) 38
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 3 cut(s) 118, 292, 300
BspACI CCGC 1 cut(s) 260
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 3 cut(s) 67, 198, 346
BspPI GGATC 1 cut(s) 295
BsrBI CCGCTC 1 cut(s) 260
BssMI GATC 3 cut(s) 118, 292, 300
Bst4CI ACNGT 4 cut(s) 64, 213, 252, 388
BstC8I GCNNGC 1 cut(s) 199
BstDEI CTNAG 4 cut(s) 54, 185, 354, 406
BstF5I GGATG 2 cut(s) 10, 448
BstHHI GCGC 1 cut(s) 317
BstKTI GATC 3 cut(s) 121, 295, 303
BstMAI GTCTC 1 cut(s) 337
BstMBI GATC 3 cut(s) 118, 292, 300
BstMWI GCNNNNNNNGC 2 cut(s) 176, 411
BstSLI GKGCMC 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 389
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BsuRI GGCC 1 cut(s) 38
BtrI CACGTC 1 cut(s) 290
BtsCI GGATG 2 cut(s) 10, 448
BtsIMutI CAGTG 1 cut(s) 209
Cac8I GCNNGC 1 cut(s) 199
CaiI CAGNNNCTG 1 cut(s) 371
CfoI GCGC 1 cut(s) 317
Csp6I GTAC 1 cut(s) 253
CviAII CATG 1 cut(s) 233
CviJI RGCY 3 cut(s) 38, 189, 197
CviKI_1 RGCY 3 cut(s) 38, 189, 197
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 4 cut(s) 54, 185, 354, 406
DpnI GATC 3 cut(s) 120, 294, 302
DpnII GATC 3 cut(s) 118, 292, 300
DraIII CACNNNGTG 1 cut(s) 213
FaeI CATG 1 cut(s) 236
FaiI YATR 4 cut(s) 111, 234, 243, 431
FalI AAGNNNNNCTT 2 cut(s) 154, 186
FaqI GGGAC 1 cut(s) 353
FatI CATG 1 cut(s) 232
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 1 cut(s) 403
FokI GGATG 2 cut(s) 17, 455
Fsp4HI GCNGC 1 cut(s) 403
GlaI GCGC 1 cut(s) 316
GluI GCNGC 1 cut(s) 403
GsaI CCCAGC 1 cut(s) 477
HaeIII GGCC 1 cut(s) 38
HhaI GCGC 1 cut(s) 317
Hin1II CATG 1 cut(s) 236
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HinfI GANTC 3 cut(s) 113, 362, 479
HphI GGTGA 1 cut(s) 196
Hpy188I TCNGA 7 cut(s) 45, 57, 70, 118, 175, 228, 355
Hpy188III TCNNGA 3 cut(s) 122, 218, 483
HpyAV CCTTC 1 cut(s) 321
HpyCH4III ACNGT 4 cut(s) 64, 213, 252, 388
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 1 cut(s) 279
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 411
HpyF3I CTNAG 4 cut(s) 54, 185, 354, 406
HpySE526I ACGT 1 cut(s) 289
Hsp92II CATG 1 cut(s) 236
HspAI GCGC 1 cut(s) 315
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 3 cut(s) 118, 292, 300
LpnPI CCDG 5 cut(s) 114, 203, 207, 360, 384
Lsp1109I GCAGC 1 cut(s) 389
LweI GCATC 1 cut(s) 166
MaeII ACGT 1 cut(s) 289
MaeIII GTNAC 1 cut(s) 244
MalI GATC 3 cut(s) 120, 294, 302
MbiI CCGCTC 1 cut(s) 260
MboI GATC 3 cut(s) 118, 292, 300
MboII GAAGA 4 cut(s) 89, 342, 451, 461
MflI RGATCY 1 cut(s) 118
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 4 cut(s) 31, 49, 282, 432
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 5 cut(s) 49, 194, 222, 415, 433
MslI CAYNNNNRTG 1 cut(s) 15
MspA1I CMGCKG 1 cut(s) 189
MwoI GCNNNNNNNGC 2 cut(s) 176, 411
NdeII GATC 3 cut(s) 118, 292, 300
NlaIII CATG 1 cut(s) 236
NmuCI GTSAC 1 cut(s) 244
PfeI GAWTC 2 cut(s) 113, 362
PkrI GCNGC 1 cut(s) 404
PspFI CCCAGC 1 cut(s) 473
PstNI CAGNNNCTG 1 cut(s) 371
PsuI RGATCY 1 cut(s) 118
PvuII CAGCTG 1 cut(s) 189
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 15
SatI GCNGC 1 cut(s) 403
Sau3AI GATC 3 cut(s) 118, 292, 300
SduI GDGCHC 1 cut(s) 12
SetI ASST 4 cut(s) 191, 199, 292, 426
SfaNI GCATC 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 4 cut(s) 31, 49, 282, 432
SsiI CCGC 1 cut(s) 260
TaaI ACNGT 4 cut(s) 64, 213, 252, 388
TaiI ACGT 1 cut(s) 292
TasI AATT 4 cut(s) 31, 49, 282, 432
TatI WGTACW 1 cut(s) 252
TfiI GAWTC 2 cut(s) 113, 362
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 1 cut(s) 402
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 4 cut(s) 33, 90, 249, 459
TspRI CASTG 1 cut(s) 216
XapI RAATTY 1 cut(s) 31
XcmI CCANNNNNNNNNTGG 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.