Rh4CG096500

E2F-associated phosphoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0014441
Physical Location & Seq
Reverse (-)
17404143 .. 17407155
3013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG096500.1

Sequence Viewer

Length: 438 bp
ATGTTGTGTATTTCAGTTTCTGATGATGATGAAATAGACTACTCCGTCAAGCCAGAGTTCTATGATTCAGACCTTGATGTAAAAGATGAGTCATGGGTTCAAAAGAAAAGGAAAGGGCGTGCTTCTGATGCTGTCCTTAGTTGTCCAGCTTGTTTCACCACACTGTGCCTCGAGTGTCAGAGGCATGAAAAATATGTGACACAGTACAGAGCAGTTTTTGTTGTTAACTGCAAAATTGGAAGTGATCAAGTGATCCACCAAAAAGGCACAAAACCAAGAAAGGGCAAAAGTGGGAGACAATCTTCTGAGATTGAAACAGTCCCTGCTGGAAACCAAACCTTCAAGCACGTCAGCTGCTTAGTTTGCTCAACAGAGGTAGGCGTAATTGATGAGGACGAAGTTTATCATTTCTTCAATGTTCTTCCTAGTGAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Eapp_C

Protein Analysis

145

Amino Acids

16.33

Weight (kDa)

5.36

Isoelectric Point (pI)

48.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Eapp_C PF10238 20 - 143 1.5e-48 E2F-associated phosphoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014441)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08320
fragaria_vesca FvH4_4g06750
malus_domestica MD16G1243400.v1.1
prunus_persica Prupe.1G070600_v2.0.a1
pyrus_communis pycom16g20430
rosa_chinensis RchiOBHm_Chr4g0398681
rosa_laevigata RLG00000009333
rosa_multiflora Rmu_sc0000586.1_g000015 Rmu_sc0008600.1_g000024
rosa_roxburghii Rroxscaffold_5G00343630
rosa_rugosa Rorug04G0010700
rosa_samantha Rh4AG088300 Rh4BG085000 Rh4BG085200 Rh4CG096500 Rh4DG080000
rosa_wichuraiana Rw4G007320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 44
AclWI GGATC 1 cut(s) 247
AdeI CACNNNGTG 1 cut(s) 165
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 4 cut(s) 101, 314, 343, 415
AjiI CACGTC 1 cut(s) 349
AluBI AGCT 2 cut(s) 149, 354
AluI AGCT 2 cut(s) 149, 354
Alw26I GTCTC 1 cut(s) 289
AlwI GGATC 1 cut(s) 247
AlwNI CAGNNNCTG 2 cut(s) 20, 323
Ama87I CYCGRG 1 cut(s) 170
ApeKI GCWGC 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 148
AvaI CYCGRG 1 cut(s) 170
BbvI GCAGC 1 cut(s) 341
BclI TGATCA 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 289
BfaI CTAG 1 cut(s) 426
BisI GCNGC 1 cut(s) 355
BlsI GCNGC 1 cut(s) 356
BmeT110I CYCGRG 1 cut(s) 170
BmgBI CACGTC 1 cut(s) 349
BmsI GCATC 1 cut(s) 118
Bsc4I CCNNNNNNNGG 1 cut(s) 281
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMII CTCAG 1 cut(s) 297
BseXI GCAGC 1 cut(s) 341
BsiHKCI CYCGRG 1 cut(s) 170
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 289
BsmFI GGGAC 1 cut(s) 305
BsoBI CYCGRG 1 cut(s) 170
Bsp143I GATC 2 cut(s) 244, 252
BspCNI CTCAG 1 cut(s) 298
BspPI GGATC 1 cut(s) 247
BssMI GATC 2 cut(s) 244, 252
Bst4CI ACNGT 3 cut(s) 165, 204, 319
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 3 cut(s) 137, 306, 358
BstKTI GATC 2 cut(s) 247, 255
BstMAI GTCTC 1 cut(s) 289
BstMBI GATC 2 cut(s) 244, 252
BstMWI GCNNNNNNNGC 2 cut(s) 128, 363
BstV1I GCAGC 1 cut(s) 341
BtrI CACGTC 1 cut(s) 349
BtsIMutI CAGTG 1 cut(s) 161
Cac8I GCNNGC 1 cut(s) 120
CaiI CAGNNNCTG 2 cut(s) 20, 323
Csp6I GTAC 1 cut(s) 205
CviAII CATG 2 cut(s) 93, 185
CviJI RGCY 3 cut(s) 52, 149, 354
CviKI_1 RGCY 3 cut(s) 52, 149, 354
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 3 cut(s) 137, 306, 358
DpnI GATC 2 cut(s) 246, 254
DpnII GATC 2 cut(s) 244, 252
DraIII CACNNNGTG 1 cut(s) 165
DrdI GACNNNNNNGTC 1 cut(s) 44
DseDI GACNNNNNNGTC 1 cut(s) 44
Eco88I CYCGRG 1 cut(s) 170
FaeI CATG 2 cut(s) 96, 188
FaiI YATR 4 cut(s) 63, 94, 186, 195
FaqI GGGAC 1 cut(s) 305
FatI CATG 2 cut(s) 92, 184
FbaI TGATCA 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 355
Fsp4HI GCNGC 1 cut(s) 355
FspBI CTAG 1 cut(s) 426
GluI GCNGC 1 cut(s) 355
Hin1II CATG 2 cut(s) 96, 188
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 3 cut(s) 65, 89, 431
HpaI GTTAAC 1 cut(s) 226
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 5 cut(s) 22, 70, 127, 180, 307
Hpy188III TCNNGA 1 cut(s) 435
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 1 cut(s) 349
HpyCH4III ACNGT 3 cut(s) 165, 204, 319
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 1 cut(s) 231
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 363
HpyF3I CTNAG 3 cut(s) 137, 306, 358
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 2 cut(s) 96, 188
Ksp22I TGATCA 1 cut(s) 244
KspAI GTTAAC 1 cut(s) 226
Kzo9I GATC 2 cut(s) 244, 252
LpnPI CCDG 4 cut(s) 66, 159, 312, 336
Lsp1109I GCAGC 1 cut(s) 341
LweI GCATC 1 cut(s) 118
MaeI CTAG 1 cut(s) 426
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 1 cut(s) 196
MalI GATC 2 cut(s) 246, 254
MboI GATC 2 cut(s) 244, 252
MboII GAAGA 3 cut(s) 294, 403, 413
MluCI AATT 2 cut(s) 234, 384
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 4 cut(s) 174, 179, 367, 385
MseI TTAA 1 cut(s) 225
MspA1I CMGCKG 1 cut(s) 354
MwoI GCNNNNNNNGC 2 cut(s) 128, 363
NdeII GATC 2 cut(s) 244, 252
NlaIII CATG 2 cut(s) 96, 188
NmuCI GTSAC 1 cut(s) 196
PaeR7I CTCGAG 1 cut(s) 170
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 356
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PspXI VCTCGAGB 1 cut(s) 170
PstNI CAGNNNCTG 2 cut(s) 20, 323
PvuII CAGCTG 1 cut(s) 354
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 1 cut(s) 355
Sau3AI GATC 2 cut(s) 244, 252
SchI GAGTC 1 cut(s) 98
SetI ASST 6 cut(s) 75, 151, 341, 351, 356, 378
SfaNI GCATC 1 cut(s) 118
Sfr274I CTCGAG 1 cut(s) 170
SlaI CTCGAG 1 cut(s) 170
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 2 cut(s) 234, 384
SspMI CTAG 1 cut(s) 426
TaaI ACNGT 3 cut(s) 165, 204, 319
TaiI ACGT 1 cut(s) 351
TaqI TCGA 1 cut(s) 171
TasI AATT 2 cut(s) 234, 384
TatI WGTACW 1 cut(s) 204
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 1 cut(s) 168
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 1 cut(s) 354
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 2 cut(s) 45, 201
TspGWI ACGGA 1 cut(s) 34
TspRI CASTG 1 cut(s) 168
XhoI CTCGAG 1 cut(s) 170
XspI CTAG 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.