MD16G1243400.v1.1

E2F-associated phosphoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0014441
Physical Location & Seq
Reverse (-)
26478665 .. 26481206
2542 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1243400.v1.1.491

Sequence Viewer

Length: 480 bp
ATGGAGATGGACAAGATGACAGACGACATGGCCTCTCCATCCAATTCTCAGAAAACTGTTTCTGATGATGATGAAATCGACTACTCCGTCAAACCAGAGTTCTATGATTCAGATATTGATGACAAAGATGAGTTATGGGTTCAAAAGAAAAGGAAAGGTGGCACTTCTGATGCTGTGCTTAGTTGTCCATCTTGTTTCACCACGCTCTGCCTCGACTGTCAAAGGCATGAAAAATATGTGACCCAGTACAGAGCAATTTTTGTTGAGAACTGCAAGATTGGAAGTGATCAAATAGTGCATCAAAAAGAAGCAAGACCTAGAAAGGGCAAAAGAGGGAGAGAATCTTCGGAGCATGAAGCAACTCCTGCAGGTAAGCAGACCGTCAAGCAAGTTTGCTGCTTAGTTTGCTCAACTGAGGTAGGTGTAATCGACGCAGAAGAAGTTTATCATTTCTTCAATGTTCTTCCAAGCGAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Eapp_C

Protein Analysis

160

Amino Acids

18.0

Weight (kDa)

4.93

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Eapp_C PF10238 34 - 157 4.5e-49 E2F-associated phosphoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014441)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08320
fragaria_vesca FvH4_4g06750
malus_domestica MD16G1243400.v1.1
prunus_persica Prupe.1G070600_v2.0.a1
pyrus_communis pycom16g20430
rosa_chinensis RchiOBHm_Chr4g0398681
rosa_laevigata RLG00000009333
rosa_multiflora Rmu_sc0000586.1_g000015 Rmu_sc0008600.1_g000024
rosa_roxburghii Rroxscaffold_5G00343630
rosa_rugosa Rorug04G0010700
rosa_samantha Rh4AG088300 Rh4BG085000 Rh4BG085200 Rh4CG096500 Rh4DG080000
rosa_wichuraiana Rw4G007320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 86
Acc36I ACCTGC 1 cut(s) 359
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 1 cut(s) 323
AgsI TTSAA 2 cut(s) 143, 457
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 396
AsuHPI GGTGA 1 cut(s) 190
BbvI GCAGC 1 cut(s) 383
BccI CCATC 2 cut(s) 46, 196
BclI TGATCA 1 cut(s) 286
BfaI CTAG 1 cut(s) 318
BfmI CTRYAG 1 cut(s) 366
BfuAI ACCTGC 1 cut(s) 359
BisI GCNGC 1 cut(s) 397
BlsI GCNGC 1 cut(s) 398
BmrI ACTGGG 1 cut(s) 238
BmsI GCATC 2 cut(s) 160, 307
BmuI ACTGGG 1 cut(s) 238
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse1I ACTGG 1 cut(s) 244
BseGI GGATG 1 cut(s) 38
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMII CTCAG 2 cut(s) 62, 405
BseNI ACTGG 1 cut(s) 244
BseXI GCAGC 1 cut(s) 383
BshFI GGCC 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 323
BsnI GGCC 1 cut(s) 32
Bsp143I GATC 1 cut(s) 286
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 2 cut(s) 61, 406
BspMAI CTGCAG 1 cut(s) 370
BspMI ACCTGC 1 cut(s) 359
BsrI ACTGG 1 cut(s) 244
BssMI GATC 1 cut(s) 286
Bst4CI ACNGT 3 cut(s) 58, 218, 382
BstAPI GCANNNNNTGC 1 cut(s) 365
BstDEI CTNAG 4 cut(s) 48, 179, 400, 414
BstF5I GGATG 1 cut(s) 38
BstKTI GATC 1 cut(s) 289
BstMBI GATC 1 cut(s) 286
BstMWI GCNNNNNNNGC 2 cut(s) 365, 405
BstSFI CTRYAG 1 cut(s) 366
BstV1I GCAGC 1 cut(s) 383
BsuRI GGCC 1 cut(s) 32
BtsCI GGATG 1 cut(s) 38
BveI ACCTGC 1 cut(s) 359
CseI GACGC 1 cut(s) 440
Csp6I GTAC 1 cut(s) 247
CviAII CATG 3 cut(s) 28, 227, 353
CviJI RGCY 1 cut(s) 32
CviKI_1 RGCY 1 cut(s) 32
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 4 cut(s) 48, 179, 400, 414
DpnI GATC 1 cut(s) 288
DpnII GATC 1 cut(s) 286
DrdI GACNNNNNNGTC 1 cut(s) 86
DseDI GACNNNNNNGTC 1 cut(s) 86
FaeI CATG 3 cut(s) 31, 230, 356
FaiI YATR 6 cut(s) 29, 105, 136, 228, 237, 354
FalI AAGNNNNNCTT 1 cut(s) 460
FatI CATG 3 cut(s) 27, 226, 352
FbaI TGATCA 1 cut(s) 286
Fnu4HI GCNGC 1 cut(s) 397
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 397
FspBI CTAG 1 cut(s) 318
GluI GCNGC 1 cut(s) 397
HaeIII GGCC 1 cut(s) 32
HgaI GACGC 1 cut(s) 440
Hin1II CATG 3 cut(s) 31, 230, 356
HinfI GANTC 3 cut(s) 107, 341, 473
HphI GGTGA 1 cut(s) 190
Hpy188I TCNGA 5 cut(s) 51, 64, 112, 169, 349
Hpy188III TCNNGA 1 cut(s) 477
Hpy99I CGWCG 1 cut(s) 434
HpyCH4III ACNGT 3 cut(s) 58, 218, 382
HpyCH4V TGCA 3 cut(s) 273, 298, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 365, 405
HpyF3I CTNAG 4 cut(s) 48, 179, 400, 414
Hsp92II CATG 3 cut(s) 31, 230, 356
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 1 cut(s) 286
LmnI GCTCC 1 cut(s) 349
LpnPI CCDG 4 cut(s) 108, 257, 354, 378
Lsp1109I GCAGC 1 cut(s) 383
LweI GCATC 2 cut(s) 160, 307
MaeI CTAG 1 cut(s) 318
MaeIII GTNAC 1 cut(s) 238
MalI GATC 1 cut(s) 288
MboI GATC 1 cut(s) 286
MboII GAAGA 4 cut(s) 336, 445, 449, 455
MluCI AATT 2 cut(s) 43, 255
MnlI CCTC 4 cut(s) 43, 221, 326, 409
MwoI GCNNNNNNNGC 2 cut(s) 365, 405
NdeII GATC 1 cut(s) 286
NlaIII CATG 3 cut(s) 31, 230, 356
NmuCI GTSAC 1 cut(s) 238
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PfeI GAWTC 2 cut(s) 107, 341
PkrI GCNGC 1 cut(s) 398
PstI CTGCAG 1 cut(s) 370
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SatI GCNGC 1 cut(s) 397
Sau3AI GATC 1 cut(s) 286
SbfI CCTGCAGG 1 cut(s) 370
SdaI CCTGCAGG 1 cut(s) 370
SetI ASST 5 cut(s) 160, 319, 373, 420, 424
SfaNI GCATC 2 cut(s) 160, 307
SfcI CTRYAG 1 cut(s) 366
Sse8387I CCTGCAGG 1 cut(s) 370
Sse9I AATT 2 cut(s) 43, 255
SspMI CTAG 1 cut(s) 318
TaaI ACNGT 3 cut(s) 58, 218, 382
TaqI TCGA 3 cut(s) 78, 213, 429
TasI AATT 2 cut(s) 43, 255
TatI WGTACW 1 cut(s) 246
TfiI GAWTC 2 cut(s) 107, 341
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 1 cut(s) 396
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 3 cut(s) 87, 243, 369
TspGWI ACGGA 1 cut(s) 76
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.