RLG00000009333

E2F-associated phosphoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0014441
Physical Location & Seq
Forward (+)
51176851 .. 51179321
2471 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009333

Sequence Viewer

Length: 486 bp
ATGGACGGGCTCGATGATGAAATGAAAGACAATATCCCCTCTCCAACCAATTCTCAGAAAACTGTTTCTGATGATGAAGAAATAGACTACTCCATCAAGCCAGAGTTCTATGATTCAGACCTTGATGTAAAAGATGAGTCATGGGTTCAAAAGAAAAGGGAAGGGCGTGCTTCTGATGCTGTCCTTAGTTGTCCAGCTTGTTTCACCACACTGTGCCTCGAGTGTCAGAGGCATGAAAAATACGTGACACAGTACAGAGCAGTTTTTGTTGTCAACTGCAAAATTGGAAGTGATCAAGTGATCCACCAAAAAGGCACAAAACCAAGAAAGGGCAAAAGTGGGAGACAATCTTCTGAGATTGAAACAGTCCCTGCTGGAAACCAAACCTTCAAGCACGTCAACTGCTTAGTTTGCTCGACAGAGGTAGGCGTAATTGATGAGGACGAAGTTTATCATTTCTTCAATGTTCTTCCTAGTGAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Eapp_C

Protein Analysis

162

Amino Acids

18.16

Weight (kDa)

4.83

Isoelectric Point (pI)

51.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Eapp_C PF10238 36 - 159 2.9e-48 E2F-associated phosphoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014441)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08320
fragaria_vesca FvH4_4g06750
malus_domestica MD16G1243400.v1.1
prunus_persica Prupe.1G070600_v2.0.a1
pyrus_communis pycom16g20430
rosa_chinensis RchiOBHm_Chr4g0398681
rosa_laevigata RLG00000009333
rosa_multiflora Rmu_sc0000586.1_g000015 Rmu_sc0008600.1_g000024
rosa_roxburghii Rroxscaffold_5G00343630
rosa_rugosa Rorug04G0010700
rosa_samantha Rh4AG088300 Rh4BG085000 Rh4BG085200 Rh4CG096500 Rh4DG080000
rosa_wichuraiana Rw4G007320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 295
AdeI CACNNNGTG 1 cut(s) 213
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 1 cut(s) 329
AgsI TTSAA 4 cut(s) 149, 362, 391, 463
AjiI CACGTC 1 cut(s) 397
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
Alw26I GTCTC 1 cut(s) 337
AlwI GGATC 1 cut(s) 295
AlwNI CAGNNNCTG 1 cut(s) 371
Ama87I CYCGRG 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 196
AvaI CYCGRG 1 cut(s) 218
BanII GRGCYC 1 cut(s) 12
BccI CCATC 1 cut(s) 101
BclI TGATCA 1 cut(s) 292
BcoDI GTCTC 1 cut(s) 337
BfaI CTAG 1 cut(s) 474
BmeT110I CYCGRG 1 cut(s) 218
BmgBI CACGTC 1 cut(s) 397
BmsI GCATC 1 cut(s) 166
BsaAI YACGTR 1 cut(s) 244
Bsc4I CCNNNNNNNGG 1 cut(s) 329
BseLI CCNNNNNNNGG 1 cut(s) 329
BseMII CTCAG 2 cut(s) 68, 345
BsiHKCI CYCGRG 1 cut(s) 218
BslFI GGGAC 1 cut(s) 353
BslI CCNNNNNNNGG 1 cut(s) 329
BsmAI GTCTC 1 cut(s) 337
BsmFI GGGAC 1 cut(s) 353
BsoBI CYCGRG 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 2 cut(s) 292, 300
BspCNI CTCAG 2 cut(s) 67, 346
BspPI GGATC 1 cut(s) 295
BssMI GATC 2 cut(s) 292, 300
Bst4CI ACNGT 4 cut(s) 64, 213, 252, 367
BstBAI YACGTR 1 cut(s) 244
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 4 cut(s) 54, 185, 354, 406
BstKTI GATC 2 cut(s) 295, 303
BstMAI GTCTC 1 cut(s) 337
BstMBI GATC 2 cut(s) 292, 300
BstMWI GCNNNNNNNGC 2 cut(s) 176, 411
BtrI CACGTC 1 cut(s) 397
BtsIMutI CAGTG 1 cut(s) 209
Cac8I GCNNGC 1 cut(s) 168
CaiI CAGNNNCTG 1 cut(s) 371
Csp6I GTAC 1 cut(s) 253
CviAII CATG 2 cut(s) 141, 233
CviJI RGCY 3 cut(s) 10, 100, 197
CviKI_1 RGCY 3 cut(s) 10, 100, 197
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 4 cut(s) 54, 185, 354, 406
DpnI GATC 2 cut(s) 294, 302
DpnII GATC 2 cut(s) 292, 300
DraIII CACNNNGTG 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 12
Eco88I CYCGRG 1 cut(s) 218
EcoT38I GRGCYC 1 cut(s) 12
FaeI CATG 2 cut(s) 144, 236
FaiI YATR 3 cut(s) 111, 142, 234
FaqI GGGAC 1 cut(s) 353
FatI CATG 2 cut(s) 140, 232
FbaI TGATCA 1 cut(s) 292
FriOI GRGCYC 1 cut(s) 12
FspBI CTAG 1 cut(s) 474
Hin1II CATG 2 cut(s) 144, 236
HincII GTYRAC 2 cut(s) 274, 400
HindII GTYRAC 2 cut(s) 274, 400
HinfI GANTC 3 cut(s) 113, 137, 479
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 2 cut(s) 274, 400
Hpy188I TCNGA 6 cut(s) 57, 70, 118, 175, 228, 355
Hpy188III TCNNGA 1 cut(s) 483
Hpy8I GTNNAC 2 cut(s) 274, 400
HpyAV CCTTC 2 cut(s) 155, 397
HpyCH4III ACNGT 4 cut(s) 64, 213, 252, 367
HpyCH4IV ACGT 2 cut(s) 243, 396
HpyCH4V TGCA 1 cut(s) 279
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 411
HpyF3I CTNAG 4 cut(s) 54, 185, 354, 406
HpySE526I ACGT 2 cut(s) 243, 396
Hsp92II CATG 2 cut(s) 144, 236
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 2 cut(s) 292, 300
LpnPI CCDG 4 cut(s) 114, 207, 360, 384
LweI GCATC 1 cut(s) 166
MaeI CTAG 1 cut(s) 474
MaeII ACGT 2 cut(s) 243, 396
MaeIII GTNAC 1 cut(s) 244
MalI GATC 2 cut(s) 294, 302
MboI GATC 2 cut(s) 292, 300
MboII GAAGA 4 cut(s) 89, 342, 451, 461
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 3 cut(s) 49, 282, 432
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 5 cut(s) 49, 222, 227, 415, 433
MwoI GCNNNNNNNGC 2 cut(s) 176, 411
NdeII GATC 2 cut(s) 292, 300
NlaIII CATG 2 cut(s) 144, 236
NmuCI GTSAC 1 cut(s) 244
PaeR7I CTCGAG 1 cut(s) 218
PfeI GAWTC 1 cut(s) 113
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
Ppu21I YACGTR 1 cut(s) 244
PspXI VCTCGAGB 1 cut(s) 218
PstNI CAGNNNCTG 1 cut(s) 371
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
Sau3AI GATC 2 cut(s) 292, 300
SchI GAGTC 1 cut(s) 146
SduI GDGCHC 1 cut(s) 12
SetI ASST 6 cut(s) 123, 199, 246, 389, 399, 426
SfaNI GCATC 1 cut(s) 166
Sfr274I CTCGAG 1 cut(s) 218
SlaI CTCGAG 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 3 cut(s) 49, 282, 432
SspMI CTAG 1 cut(s) 474
TaaI ACNGT 4 cut(s) 64, 213, 252, 367
TaiI ACGT 2 cut(s) 246, 399
TaqI TCGA 3 cut(s) 12, 219, 416
TasI AATT 3 cut(s) 49, 282, 432
TatI WGTACW 1 cut(s) 252
TfiI GAWTC 1 cut(s) 113
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 4 cut(s) 33, 38, 90, 249
TspRI CASTG 1 cut(s) 216
XhoI CTCGAG 1 cut(s) 218
XspI CTAG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.