Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0014441

Physical Location & Seq

Genomic Coordinates Reverse (-)

18212569 .. 18215944

Gene Structure 3376 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g20430.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGATATGGTTTTGTGCAACTCCTTCCAGAATCCAGCCGAGCCCAGATAATGCTGGGTGGGCTCATCAAAATATCAGCAACCCAAATACAACCGCCATAAATAAAACTAAACAAATTAAAACAAAGCAAAGGGGAAAGAGGCGAGACAGAGTCTTAAACCCTGGACAGATGGAGATGGACAAGATGACAGACCACATGGCCTCTCCATCCAATTCTCAGAAAACTGTTTCTGATGATGATGAAATTGACTACTCCGTCAAACCAGAGTTCTATGATTCAGATATTGATTACAAGGATGAGTCATGGGTTCAAAAGAAAAGGAAAGGTGGCACTTCTGATGCTGTGCTTAGTTGTCCATCTTGTTTCACCACGCTCTGCCTTGACTGTCAAAGGCATGAAAAATATGTGACCCAGTACAGAGCAATTTTTGTTGAGAACTGCAAGATTGGAAGTGATCAAATAGTGCATCAAAAAGAAGCAAGACCTAGAAGGGGCAAAAGAGGGAGAGAATCTTCGGAGCATGAAGCAACTCCTGCAGGTAACCAGACCGTCAAGCAAGTTTGCTGCTTAGTTTGCTCAACTGAGGTAGGTGTAATCGACGCTGATGAAGTTTATCATTTCTTCAATGTTCTTCCAAGCGAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Eapp_C

Protein Analysis

216

Amino Acids

24.4

Weight (kDa)

6.98

Isoelectric Point (pI)

48.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08320
fragaria_vesca	FvH4_4g06750
malus_domestica	MD16G1243400.v1.1
prunus_persica	Prupe.1G070600_v2.0.a1
pyrus_communis	pycom16g20430
rosa_chinensis	RchiOBHm_Chr4g0398681
rosa_laevigata	RLG00000009333
rosa_multiflora	Rmu_sc0000586.1_g000015 Rmu_sc0008600.1_g000024
rosa_roxburghii	Rroxscaffold_5G00343630
rosa_rugosa	Rorug04G0010700
rosa_samantha	Rh4AG088300 Rh4BG085000 Rh4BG085200 Rh4CG096500 Rh4DG080000
rosa_wichuraiana	Rw4G007320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	254
Acc36I	ACCTGC	1 cut(s)	527
AciI	CCGC	1 cut(s)	93
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	1 cut(s)	491
AgsI	TTSAA	2 cut(s)	311, 625
AjnI	CCWGG	1 cut(s)	160
Alw26I	GTCTC	1 cut(s)	138
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	1 cut(s)	564
AsuHPI	GGTGA	1 cut(s)	358
BanII	GRGCYC	2 cut(s)	44, 64
BbvI	GCAGC	1 cut(s)	551
BccI	CCATC	4 cut(s)	163, 169, 214, 364
BciT130I	CCWGG	1 cut(s)	162
BclI	TGATCA	1 cut(s)	454
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	1 cut(s)	486
BfmI	CTRYAG	1 cut(s)	534
BfuAI	ACCTGC	1 cut(s)	527
BisI	GCNGC	1 cut(s)	565
BlsI	GCNGC	1 cut(s)	566
Bme1390I	CCNGG	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	162
BmrI	ACTGGG	1 cut(s)	406
BmsI	GCATC	2 cut(s)	328, 475
BmuI	ACTGGG	1 cut(s)	406
BsaJI	CCNNGG	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	1 cut(s)	491
Bse1I	ACTGG	1 cut(s)	412
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	2 cut(s)	206, 301
BseLI	CCNNNNNNNGG	1 cut(s)	491
BseMII	CTCAG	2 cut(s)	230, 573
BseNI	ACTGG	1 cut(s)	412
BseXI	GCAGC	1 cut(s)	551
BseYI	CCCAGC	1 cut(s)	53
BshFI	GGCC	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	491
BsmAI	GTCTC	1 cut(s)	138
BsnI	GGCC	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	44, 64
Bsp143I	GATC	1 cut(s)	454
BspACI	CCGC	1 cut(s)	93
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	2 cut(s)	229, 574
BspMAI	CTGCAG	1 cut(s)	538
BspMI	ACCTGC	1 cut(s)	527
BsrI	ACTGG	1 cut(s)	412
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	1 cut(s)	454
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	3 cut(s)	226, 386, 550
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstDEI	CTNAG	4 cut(s)	216, 347, 568, 582
BstEII	GGTNACC	1 cut(s)	539
BstF5I	GGATG	2 cut(s)	206, 301
BstKTI	GATC	1 cut(s)	457
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	454
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 533, 573
BstNI	CCWGG	1 cut(s)	162
BstPI	GGTNACC	1 cut(s)	539
BstSCI	CCNGG	1 cut(s)	160
BstSFI	CTRYAG	1 cut(s)	534
BstV1I	GCAGC	1 cut(s)	551
BsuRI	GGCC	1 cut(s)	200
BtsCI	GGATG	2 cut(s)	206, 301
BveI	ACCTGC	1 cut(s)	527
CseI	GACGC	1 cut(s)	608
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	4 cut(s)	196, 303, 395, 521
CviJI	RGCY	4 cut(s)	37, 42, 62, 200
CviKI_1	RGCY	4 cut(s)	37, 42, 62, 200
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	4 cut(s)	216, 347, 568, 582
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
Eco24I	GRGCYC	2 cut(s)	44, 64
Eco91I	GGTNACC	1 cut(s)	539
EcoO65I	GGTNACC	1 cut(s)	539
EcoRII	CCWGG	1 cut(s)	160
EcoT38I	GRGCYC	2 cut(s)	44, 64
FaeI	CATG	4 cut(s)	199, 306, 398, 524
FaiI	YATR	8 cut(s)	7, 98, 197, 273, 304, 396, 405, 522
FalI	AAGNNNNNCTT	1 cut(s)	628
FatI	CATG	4 cut(s)	195, 302, 394, 520
FbaI	TGATCA	1 cut(s)	454
Fnu4HI	GCNGC	1 cut(s)	565
FokI	GGATG	2 cut(s)	193, 308
FriOI	GRGCYC	2 cut(s)	44, 64
Fsp4HI	GCNGC	1 cut(s)	565
FspBI	CTAG	1 cut(s)	486
GluI	GCNGC	1 cut(s)	565
GsaI	CCCAGC	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	200
HgaI	GACGC	1 cut(s)	608
Hin1II	CATG	4 cut(s)	199, 306, 398, 524
HinfI	GANTC	6 cut(s)	30, 150, 275, 299, 509, 641
HphI	GGTGA	1 cut(s)	358
Hpy188I	TCNGA	5 cut(s)	219, 232, 280, 337, 517
Hpy188III	TCNNGA	2 cut(s)	27, 645
Hpy99I	CGWCG	1 cut(s)	602
HpyAV	CCTTC	2 cut(s)	33, 483
HpyCH4III	ACNGT	3 cut(s)	226, 386, 550
HpyCH4V	TGCA	4 cut(s)	17, 441, 466, 536
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 533, 573
HpyF3I	CTNAG	4 cut(s)	216, 347, 568, 582
Hsp92II	CATG	4 cut(s)	199, 306, 398, 524
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	1 cut(s)	454
LmnI	GCTCC	1 cut(s)	517
Lsp1109I	GCAGC	1 cut(s)	551
LweI	GCATC	2 cut(s)	328, 475
MaeI	CTAG	1 cut(s)	486
MaeIII	GTNAC	2 cut(s)	406, 539
MalI	GATC	1 cut(s)	456
MboI	GATC	1 cut(s)	454
MboII	GAAGA	3 cut(s)	504, 613, 623
MhlI	GDGCHC	2 cut(s)	44, 64
MluCI	AATT	4 cut(s)	114, 211, 243, 423
MlyI	GAGTC	2 cut(s)	159, 308
MnlI	CCTC	4 cut(s)	132, 211, 494, 577
MseI	TTAA	2 cut(s)	117, 155
MspR9I	CCNGG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	3 cut(s)	59, 533, 573
NdeII	GATC	1 cut(s)	454
NlaIII	CATG	4 cut(s)	199, 306, 398, 524
NmeAIII	GCCGAG	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	406
PfeI	GAWTC	3 cut(s)	30, 275, 509
PflFI	GACNNNGTC	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	566
PleI	GAGTC	2 cut(s)	158, 307
PpsI	GAGTC	2 cut(s)	158, 307
Psp6I	CCWGG	1 cut(s)	160
PspEI	GGTNACC	1 cut(s)	539
PspFI	CCCAGC	1 cut(s)	53
PspGI	CCWGG	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	538
PsyI	GACNNNGTC	1 cut(s)	149
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
SaqAI	TTAA	2 cut(s)	117, 155
SatI	GCNGC	1 cut(s)	565
Sau3AI	GATC	1 cut(s)	454
SbfI	CCTGCAGG	1 cut(s)	538
SchI	GAGTC	2 cut(s)	159, 308
ScrFI	CCNGG	1 cut(s)	162
SdaI	CCTGCAGG	1 cut(s)	538
SduI	GDGCHC	2 cut(s)	44, 64
SetI	ASST	5 cut(s)	328, 487, 541, 588, 592
SfaNI	GCATC	2 cut(s)	328, 475
SfcI	CTRYAG	1 cut(s)	534
Sse8387I	CCTGCAGG	1 cut(s)	538
Sse9I	AATT	4 cut(s)	114, 211, 243, 423
SsiI	CCGC	1 cut(s)	93
SspMI	CTAG	1 cut(s)	486
StyD4I	CCNGG	1 cut(s)	160
TaaI	ACNGT	3 cut(s)	226, 386, 550
TaqI	TCGA	1 cut(s)	597
TasI	AATT	4 cut(s)	114, 211, 243, 423
TatI	WGTACW	1 cut(s)	414
TfiI	GAWTC	3 cut(s)	30, 275, 509
Tru1I	TTAA	2 cut(s)	117, 155
Tru9I	TTAA	2 cut(s)	117, 155
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	1 cut(s)	564
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	4 cut(s)	255, 411, 537, 621
TspGWI	ACGGA	1 cut(s)	244
Tth111I	GACNNNGTC	1 cut(s)	149
XspI	CTAG	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.