Prupe.1G070600_v2.0.a1

E2F-associated phosphoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014441
Physical Location & Seq
Reverse (-)
5010491 .. 5014119
3629 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G070600.1

Sequence Viewer

Length: 552 bp
ATGAAGTCCGACTTAAACCCAGCAGATACAAAGAAAGAAAGTGAGAACAGAGCAGAGACGAAGATGGAAGTAGATGGAGATGACAAGAGAGACCCCCCCGTGGGCTCTCCAACCAATTCTCAGAAAACTGTTTCTGATGACGATGAAATAGACTACTCCGTCAAACCCGAGTTCTATGATTCAGATATTGATGACAAAGATGAGTTGTGGGTTCAAACGAAAAGGAAAGGTCGTACTTCTGATGCTGTGCTTAGTTGTCCATCTTGTTTCACCACACTATGCCTGGAGTGTCAAAGGCATGAAAAGTATGTGACCCAATACAGAGCAGTGTTTGTTGTTAACTGCAAGACTGGAAGTGATCAAATGTTCCATCAAAAAGAAGGAAGACCTAGAAAGGGCAAACTAGGGAGAGAATCTTCTGAGAGCAAAGCAATTCCTGCAGGTAACCAAACCTTCAAGCAAGTCTGCTGCTTACTTTGCTCAACAGAGGTAGGTGTAATTGATGAAGAAGAAGTCTATCATTTCTTCAATGTTCTTCCCAGCGAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Eapp_C

Protein Analysis

184

Amino Acids

20.71

Weight (kDa)

4.94

Isoelectric Point (pI)

45.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014441)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08320
fragaria_vesca FvH4_4g06750
malus_domestica MD16G1243400.v1.1
prunus_persica Prupe.1G070600_v2.0.a1
pyrus_communis pycom16g20430
rosa_chinensis RchiOBHm_Chr4g0398681
rosa_laevigata RLG00000009333
rosa_multiflora Rmu_sc0000586.1_g000015 Rmu_sc0008600.1_g000024
rosa_roxburghii Rroxscaffold_5G00343630
rosa_rugosa Rorug04G0010700
rosa_samantha Rh4AG088300 Rh4BG085000 Rh4BG085200 Rh4CG096500 Rh4DG080000
rosa_wichuraiana Rw4G007320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
Acc36I ACCTGC 1 cut(s) 431
AfaI GTAC 1 cut(s) 235
AfiI CCNNNNNNNGG 3 cut(s) 100, 101, 395
AgsI TTSAA 3 cut(s) 215, 457, 529
AjnI CCWGG 1 cut(s) 282
Alw26I GTCTC 2 cut(s) 50, 84
Ama87I CYCGRG 1 cut(s) 167
ApeKI GCWGC 1 cut(s) 468
AsuHPI GGTGA 1 cut(s) 262
AvaI CYCGRG 1 cut(s) 167
BanII GRGCYC 1 cut(s) 107
BbsI GAAGAC 1 cut(s) 391
BbvI GCAGC 1 cut(s) 455
BccI CCATC 4 cut(s) 58, 68, 268, 378
BciT130I CCWGG 1 cut(s) 284
BclI TGATCA 1 cut(s) 358
BcoDI GTCTC 2 cut(s) 50, 84
BfaI CTAG 2 cut(s) 390, 404
BfmI CTRYAG 1 cut(s) 438
BfuAI ACCTGC 1 cut(s) 431
BisI GCNGC 1 cut(s) 469
BlsI GCNGC 1 cut(s) 470
Bme1390I CCNGG 1 cut(s) 284
BmeT110I CYCGRG 1 cut(s) 167
BmrFI CCNGG 1 cut(s) 284
BmsI GCATC 1 cut(s) 232
BpiI GAAGAC 1 cut(s) 391
BpmI CTGGAG 1 cut(s) 305
BsaI GGTCTC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 99
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 101, 395
Bse1I ACTGG 1 cut(s) 355
BseBI CCWGG 1 cut(s) 284
BseDI CCNNGG 1 cut(s) 99
BseLI CCNNNNNNNGG 3 cut(s) 100, 101, 395
BseMII CTCAG 2 cut(s) 134, 411
BseNI ACTGG 1 cut(s) 355
BseXI GCAGC 1 cut(s) 455
BseYI CCCAGC 2 cut(s) 19, 539
BsiHKCI CYCGRG 1 cut(s) 167
BslI CCNNNNNNNGG 3 cut(s) 100, 101, 395
BsmAI GTCTC 2 cut(s) 50, 84
BsmBI CGTCTC 1 cut(s) 50
Bso31I GGTCTC 1 cut(s) 84
BsoBI CYCGRG 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 1 cut(s) 358
BspCNI CTCAG 2 cut(s) 133, 412
BspMAI CTGCAG 1 cut(s) 442
BspMI ACCTGC 1 cut(s) 431
BspTNI GGTCTC 1 cut(s) 84
BsrI ACTGG 1 cut(s) 355
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 1 cut(s) 358
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 1 cut(s) 130
BstAPI GCANNNNNTGC 1 cut(s) 437
BstDEI CTNAG 3 cut(s) 120, 251, 420
BstDSI CCRYGG 1 cut(s) 99
BstEII GGTNACC 1 cut(s) 443
BstKTI GATC 1 cut(s) 361
BstMAI GTCTC 2 cut(s) 50, 84
BstMBI GATC 1 cut(s) 358
BstMWI GCNNNNNNNGC 2 cut(s) 437, 477
BstNI CCWGG 1 cut(s) 284
BstPI GGTNACC 1 cut(s) 443
BstSCI CCNGG 1 cut(s) 282
BstSFI CTRYAG 1 cut(s) 438
BstV1I GCAGC 1 cut(s) 455
BstV2I GAAGAC 1 cut(s) 391
BtgI CCRYGG 1 cut(s) 99
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 1 cut(s) 333
BveI ACCTGC 1 cut(s) 431
Csp6I GTAC 1 cut(s) 234
CviAII CATG 1 cut(s) 299
CviJI RGCY 1 cut(s) 105
CviKI_1 RGCY 1 cut(s) 105
CviQI GTAC 1 cut(s) 234
DdeI CTNAG 3 cut(s) 120, 251, 420
DpnI GATC 1 cut(s) 360
DpnII GATC 1 cut(s) 358
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 107
Eco31I GGTCTC 1 cut(s) 84
Eco88I CYCGRG 1 cut(s) 167
Eco91I GGTNACC 1 cut(s) 443
EcoO65I GGTNACC 1 cut(s) 443
EcoRII CCWGG 1 cut(s) 282
EcoT38I GRGCYC 1 cut(s) 107
Esp3I CGTCTC 1 cut(s) 50
FaeI CATG 1 cut(s) 302
FaiI YATR 4 cut(s) 177, 280, 300, 309
FalI AAGNNNNNCTT 1 cut(s) 28
FatI CATG 1 cut(s) 298
FbaI TGATCA 1 cut(s) 358
Fnu4HI GCNGC 1 cut(s) 469
FriOI GRGCYC 1 cut(s) 107
Fsp4HI GCNGC 1 cut(s) 469
FspBI CTAG 2 cut(s) 390, 404
GluI GCNGC 1 cut(s) 469
GsaI CCCAGC 2 cut(s) 23, 543
GsuI CTGGAG 1 cut(s) 305
Hin1II CATG 1 cut(s) 302
HincII GTYRAC 1 cut(s) 340
HindII GTYRAC 1 cut(s) 340
HinfI GANTC 3 cut(s) 179, 413, 545
HpaI GTTAAC 1 cut(s) 340
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 1 cut(s) 340
Hpy188I TCNGA 6 cut(s) 10, 123, 136, 184, 241, 421
Hpy188III TCNNGA 1 cut(s) 549
Hpy8I GTNNAC 1 cut(s) 340
HpyAV CCTTC 2 cut(s) 374, 463
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4V TGCA 2 cut(s) 345, 440
HpyF10VI GCNNNNNNNGC 2 cut(s) 437, 477
HpyF3I CTNAG 3 cut(s) 120, 251, 420
Hsp92II CATG 1 cut(s) 302
Ksp22I TGATCA 1 cut(s) 358
KspAI GTTAAC 1 cut(s) 340
Kzo9I GATC 1 cut(s) 358
LpnPI CCDG 6 cut(s) 33, 269, 296, 336, 426, 450
Lsp1109I GCAGC 1 cut(s) 455
LweI GCATC 1 cut(s) 232
MaeI CTAG 2 cut(s) 390, 404
MaeIII GTNAC 2 cut(s) 310, 443
MalI GATC 1 cut(s) 360
MboI GATC 1 cut(s) 358
MboII GAAGA 7 cut(s) 73, 396, 408, 517, 518, 521, 527
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 3 cut(s) 115, 432, 498
MmeI TCCRAC 2 cut(s) 33, 134
MnlI CCTC 1 cut(s) 481
MseI TTAA 2 cut(s) 14, 339
MspR9I CCNGG 1 cut(s) 284
MvaI CCWGG 1 cut(s) 284
MwoI GCNNNNNNNGC 2 cut(s) 437, 477
NdeII GATC 1 cut(s) 358
NlaIII CATG 1 cut(s) 302
NmuCI GTSAC 1 cut(s) 310
PfeI GAWTC 2 cut(s) 179, 413
PkrI GCNGC 1 cut(s) 470
Psp6I CCWGG 1 cut(s) 282
PspEI GGTNACC 1 cut(s) 443
PspFI CCCAGC 2 cut(s) 19, 539
PspGI CCWGG 1 cut(s) 282
PstI CTGCAG 1 cut(s) 442
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
SaqAI TTAA 2 cut(s) 14, 339
SatI GCNGC 1 cut(s) 469
Sau3AI GATC 1 cut(s) 358
SbfI CCTGCAGG 1 cut(s) 442
ScrFI CCNGG 1 cut(s) 284
SdaI CCTGCAGG 1 cut(s) 442
SduI GDGCHC 1 cut(s) 107
SetI ASST 6 cut(s) 232, 391, 445, 455, 492, 496
SfaNI GCATC 1 cut(s) 232
SfcI CTRYAG 1 cut(s) 438
Sse8387I CCTGCAGG 1 cut(s) 442
Sse9I AATT 3 cut(s) 115, 432, 498
SspMI CTAG 2 cut(s) 390, 404
StyD4I CCNGG 1 cut(s) 282
TaaI ACNGT 1 cut(s) 130
TasI AATT 3 cut(s) 115, 432, 498
TfiI GAWTC 2 cut(s) 179, 413
Tru1I TTAA 2 cut(s) 14, 339
Tru9I TTAA 2 cut(s) 14, 339
TscAI CASTG 1 cut(s) 333
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 1 cut(s) 468
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 4 cut(s) 17, 159, 315, 519
TspGWI ACGGA 1 cut(s) 148
TspRI CASTG 1 cut(s) 333
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
XspI CTAG 2 cut(s) 390, 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.