Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013465

Physical Location & Seq

Genomic Coordinates Reverse (-)

2755144 .. 2758540

Gene Structure 3397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G08520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGACGGTGGAGGAAGTTAGTGATGGTTCTGTGTGGAGTAGGGAGGATGATATTGCCTTTGAGAGAGCTCTAGCCAATAATACCGATGAATCAGAGGAACGGTGGGAGAAGATTGCTGCAGACGTTCCAGGCAAAAGTGTTGAACAGATTAAAGAACATTACGAGCTTTTAGTTGAAGATGTTACTAGGATTGAATCAGGATGTGTGCCTCTTCCTGCCTATGGGTCTCCTGAAGGATCGAATGGCCATGCTGGTGATGAAGGAGCAAGTAGTAAGAAAGGAGGTAACAGTCATGCGGGAGAGTCTAACCAAGCAGGTAAATCAAAGTCCGATCAAGAACGACGAAAGGGTATCGCGTGGACAGAAGATGAGCACAGGTTATTTCTTCTTGGTTTGGATAAGTACGGGAAAGGTGATTGGCGTAGCATTTCTCGCAACTTTGTAGTAACAAGAACACCGACCCAAGTTGCGAGCCATGCTCAAAAGTATTTCATTCGTCTAAATTCAATGAACAAAGACAGAAGGCGATCAAGCATTCACGACATCACTAGTGTTGGCAACGCAGATGTCTCAACGCCACAAGGACCAATCACTGGTCAGAACAACAGCAATAACAACAACAACAACAACAACAACAACAGTTCTCCTGCTGTTGCTGGAGGAGGAAACAAATCAGCCAAGCAAGCCGTCTCTCAAGCACCACCTGGACCTCCTATGTATGGAACACCCGCCATAGGTCAGCCAGCAGTTGGAACACCAGTGAACCTCCCAGCTCCACCTCACATGGCTTATGGAGTTCATGCGGCTCCAGTCCCTGGCTCAGTGGTTCCTGGTGCAGCAATGAACATTGGTCAAATGCCGTACACCATGCCGCGTACACCAACGGCTCATAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009739 GO:0009751 GO:0009787 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0010033 GO:0010035 GO:0010115 GO:0010116 GO:0010468 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0010628 GO:0010646 GO:0014070 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0022603 GO:0023051 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0040008 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044424 GO:0044464 GO:0045828 GO:0045834 GO:0045893 GO:0045927 GO:0045935 GO:0046677 GO:0046889 GO:0046890 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0048638 GO:0048639 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1900618 GO:1901000 GO:1901001 GO:1901371 GO:1901419 GO:1901700 GO:1902680 GO:1902930 GO:1902932 GO:1903506 GO:1903508 GO:1905421 GO:1905613 GO:1905615 GO:1905957 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

298

Amino Acids

31.81

Weight (kDa)

6.32

Isoelectric Point (pI)

50.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	11 - 54	2.8e-06	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	119 - 164	2.5e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08520
fragaria_vesca	FvH4_4g37210 FvH4_4g37210
malus_domestica	MD00G1126800.v1.1 MD13G1002700.v1.1
prunus_persica	Prupe.1G349700_v2.0.a1
pyrus_communis	pycom13g00230 pycom16g00150
rosa_chinensis	RchiOBHm_Chr4g0446981
rosa_laevigata	RLG00000005614
rosa_multiflora	Rmu_sc0001753.1_g000003
rosa_roxburghii	Rroxscaffold_5G00387320
rosa_rugosa	Rorug04G0376800
rosa_samantha	Rh4AG438400 Rh4BG447400 Rh4CG464500 Rh4DG446000
rosa_wichuraiana	Rw4G037490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	305
AccB7I	CCANNNNNTGG	3 cut(s)	593, 749, 815
AccII	CGCG	2 cut(s)	356, 874
AciI	CCGC	4 cut(s)	296, 729, 803, 872
AclWI	GGATC	1 cut(s)	244
AcoI	YGGCCR	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	502
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	3 cut(s)	404, 863, 877
AfiI	CCNNNNNNNGG	6 cut(s)	221, 593, 719, 734, 749, 815
AgsI	TTSAA	4 cut(s)	143, 176, 194, 507
AhlI	ACTAGT	1 cut(s)	548
AjnI	CCWGG	4 cut(s)	127, 703, 814, 829
AluBI	AGCT	3 cut(s)	68, 166, 773
AluI	AGCT	3 cut(s)	68, 166, 773
Alw21I	GWGCWC	2 cut(s)	70, 375
Alw26I	GTCTC	3 cut(s)	231, 574, 694
AlwI	GGATC	1 cut(s)	244
AlwNI	CAGNNNCTG	1 cut(s)	815
AoxI	GGCC	1 cut(s)	244
ApeKI	GCWGC	2 cut(s)	116, 836
ApoI	RAATTY	1 cut(s)	502
AspS9I	GGNCC	2 cut(s)	584, 707
AsuHPI	GGTGA	2 cut(s)	266, 425
AvaII	GGWCC	2 cut(s)	584, 707
BalI	TGGCCA	1 cut(s)	246
BanII	GRGCYC	1 cut(s)	70
Bbv12I	GWGCWC	2 cut(s)	70, 375
BbvI	GCAGC	2 cut(s)	103, 848
BccI	CCATC	1 cut(s)	17
BceAI	ACGGC	2 cut(s)	671, 844
BciT130I	CCWGG	4 cut(s)	129, 705, 816, 831
BcoDI	GTCTC	3 cut(s)	231, 574, 694
BcuI	ACTAGT	1 cut(s)	548
BfaI	CTAG	3 cut(s)	71, 186, 549
BfmI	CTRYAG	1 cut(s)	117
BfuAI	ACCTGC	1 cut(s)	305
BisI	GCNGC	4 cut(s)	117, 804, 837, 872
BlsI	GCNGC	4 cut(s)	118, 805, 838, 873
Bme1390I	CCNGG	4 cut(s)	129, 705, 816, 831
Bme18I	GGWCC	2 cut(s)	584, 707
BmgT120I	GGNCC	2 cut(s)	584, 707
BmiI	GGNNCC	2 cut(s)	807, 828
BmrFI	CCNGG	4 cut(s)	129, 705, 816, 831
BplI	GAGNNNNNCTC	2 cut(s)	463, 495
BpmI	CTGGAG	2 cut(s)	678, 792
BpuEI	CTTGAG	1 cut(s)	678
BsaI	GGTCTC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	814
Bsc4I	CCNNNNNNNGG	6 cut(s)	221, 593, 719, 734, 749, 815
Bse1I	ACTGG	3 cut(s)	598, 758, 809
Bse3DI	GCAATG	1 cut(s)	846
BseBI	CCWGG	4 cut(s)	129, 705, 816, 831
BseDI	CCNNGG	1 cut(s)	814
BseGI	GGATG	2 cut(s)	52, 206
BseLI	CCNNNNNNNGG	6 cut(s)	221, 593, 719, 734, 749, 815
BseMI	GCAATG	1 cut(s)	846
BseMII	CTCAG	1 cut(s)	834
BseNI	ACTGG	3 cut(s)	598, 758, 809
BseRI	GAGGAG	1 cut(s)	675
BseXI	GCAGC	2 cut(s)	103, 848
BseYI	CCCAGC	1 cut(s)	769
BsgI	GTGCAG	1 cut(s)	855
Bsh1236I	CGCG	2 cut(s)	356, 874
BshFI	GGCC	1 cut(s)	246
BsiHKAI	GWGCWC	2 cut(s)	70, 375
BslFI	GGGAC	1 cut(s)	797
BslI	CCNNNNNNNGG	6 cut(s)	221, 593, 719, 734, 749, 815
BsmAI	GTCTC	3 cut(s)	231, 574, 694
BsmBI	CGTCTC	1 cut(s)	694
BsmFI	GGGAC	1 cut(s)	797
BsmI	GAATGC	1 cut(s)	534
BsnI	GGCC	1 cut(s)	246
Bso31I	GGTCTC	1 cut(s)	231
Bsp1286I	GDGCHC	2 cut(s)	70, 375
Bsp143I	GATC	3 cut(s)	236, 331, 527
BspACI	CCGC	4 cut(s)	296, 729, 803, 872
BspANI	GGCC	1 cut(s)	246
BspCNI	CTCAG	1 cut(s)	833
BspFNI	CGCG	2 cut(s)	356, 874
BspLI	GGNNCC	2 cut(s)	807, 828
BspMAI	CTGCAG	1 cut(s)	121
BspMI	ACCTGC	1 cut(s)	305
BspPI	GGATC	1 cut(s)	244
BspTNI	GGTCTC	1 cut(s)	231
BsrDI	GCAATG	1 cut(s)	846
BsrI	ACTGG	3 cut(s)	598, 758, 809
BssECI	CCNNGG	1 cut(s)	814
BssMI	GATC	3 cut(s)	236, 331, 527
Bst2UI	CCWGG	4 cut(s)	129, 705, 816, 831
Bst4CI	ACNGT	4 cut(s)	7, 102, 290, 641
Bst6I	CTCTTC	1 cut(s)	216
BstC8I	GCNNGC	3 cut(s)	472, 684, 744
BstDEI	CTNAG	1 cut(s)	820
BstF5I	GGATG	2 cut(s)	52, 206
BstFNI	CGCG	2 cut(s)	356, 874
BstKTI	GATC	3 cut(s)	239, 334, 530
BstMAI	GTCTC	3 cut(s)	231, 574, 694
BstMBI	GATC	3 cut(s)	236, 331, 527
BstMWI	GCNNNNNNNGC	3 cut(s)	432, 476, 683
BstNI	CCWGG	4 cut(s)	129, 705, 816, 831
BstSCI	CCNGG	4 cut(s)	127, 703, 814, 829
BstSFI	CTRYAG	1 cut(s)	117
BstUI	CGCG	2 cut(s)	356, 874
BstV1I	GCAGC	2 cut(s)	103, 848
BsuRI	GGCC	1 cut(s)	246
BtsCI	GGATG	2 cut(s)	52, 206
BtsIMutI	CAGTG	3 cut(s)	591, 765, 828
BveI	ACCTGC	1 cut(s)	305
Cac8I	GCNNGC	3 cut(s)	472, 684, 744
CaiI	CAGNNNCTG	1 cut(s)	815
Cfr13I	GGNCC	2 cut(s)	584, 707
Csp6I	GTAC	3 cut(s)	403, 862, 876
CviAII	CATG	6 cut(s)	248, 293, 476, 784, 800, 868
CviQI	GTAC	3 cut(s)	403, 862, 876
DdeI	CTNAG	1 cut(s)	820
DpnI	GATC	3 cut(s)	238, 333, 529
DpnII	GATC	3 cut(s)	236, 331, 527
EaeI	YGGCCR	1 cut(s)	244
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Ecl136II	GAGCTC	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	70
Eco31I	GGTCTC	1 cut(s)	231
Eco47I	GGWCC	2 cut(s)	584, 707
Eco53kI	GAGCTC	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	68
EcoRII	CCWGG	4 cut(s)	127, 703, 814, 829
EcoT38I	GRGCYC	1 cut(s)	70
Esp3I	CGTCTC	1 cut(s)	694
FaeI	CATG	6 cut(s)	251, 296, 479, 787, 803, 871
FaqI	GGGAC	1 cut(s)	797
FatI	CATG	6 cut(s)	247, 292, 475, 783, 799, 867
FauI	CCCGC	2 cut(s)	289, 736
Fnu4HI	GCNGC	4 cut(s)	117, 804, 837, 872
FokI	GGATG	2 cut(s)	59, 213
FriOI	GRGCYC	1 cut(s)	70
Fsp4HI	GCNGC	4 cut(s)	117, 804, 837, 872
FspBI	CTAG	3 cut(s)	71, 186, 549
GluI	GCNGC	4 cut(s)	117, 804, 837, 872
GsaI	CCCAGC	1 cut(s)	773
GsuI	CTGGAG	2 cut(s)	678, 792
HaeIII	GGCC	1 cut(s)	246
Hin1II	CATG	6 cut(s)	251, 296, 479, 787, 803, 871
HinfI	GANTC	3 cut(s)	89, 194, 302
HphI	GGTGA	2 cut(s)	266, 425
Hpy166II	GTNNAC	4 cut(s)	360, 763, 864, 878
Hpy188I	TCNGA	3 cut(s)	94, 331, 600
Hpy188III	TCNNGA	4 cut(s)	198, 230, 335, 539
Hpy8I	GTNNAC	4 cut(s)	360, 763, 864, 878
Hpy99I	CGWCG	1 cut(s)	345
HpyAV	CCTTC	3 cut(s)	227, 254, 516
HpyCH4III	ACNGT	4 cut(s)	7, 102, 290, 641
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	2 cut(s)	119, 836
HpyF10VI	GCNNNNNNNGC	3 cut(s)	432, 476, 683
HpyF3I	CTNAG	1 cut(s)	820
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	6 cut(s)	251, 296, 479, 787, 803, 871
Kzo9I	GATC	3 cut(s)	236, 331, 527
LmnI	GCTCC	3 cut(s)	263, 778, 811
Lsp1109I	GCAGC	2 cut(s)	103, 848
MaeI	CTAG	3 cut(s)	71, 186, 549
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	3 cut(s)	181, 284, 445
MalI	GATC	3 cut(s)	238, 333, 529
MboI	GATC	3 cut(s)	236, 331, 527
MboII	GAAGA	5 cut(s)	121, 188, 203, 377, 377
MhlI	GDGCHC	2 cut(s)	70, 375
MlsI	TGGCCA	1 cut(s)	246
MluCI	AATT	1 cut(s)	502
MluNI	TGGCCA	1 cut(s)	246
MlyI	GAGTC	1 cut(s)	311
MmeI	TCCRAC	1 cut(s)	730
Mox20I	TGGCCA	1 cut(s)	246
MscI	TGGCCA	1 cut(s)	246
MseI	TTAA	1 cut(s)	150
MslI	CAYNNNNRTG	1 cut(s)	252
Msp20I	TGGCCA	1 cut(s)	246
MspR9I	CCNGG	4 cut(s)	129, 705, 816, 831
Mva1269I	GAATGC	1 cut(s)	534
MvaI	CCWGG	4 cut(s)	129, 705, 816, 831
MvnI	CGCG	2 cut(s)	356, 874
MwoI	GCNNNNNNNGC	3 cut(s)	432, 476, 683
NdeII	GATC	3 cut(s)	236, 331, 527
NlaIII	CATG	6 cut(s)	251, 296, 479, 787, 803, 871
NlaIV	GGNNCC	2 cut(s)	807, 828
PctI	GAATGC	1 cut(s)	534
PfeI	GAWTC	2 cut(s)	89, 194
PflMI	CCANNNNNTGG	3 cut(s)	593, 749, 815
PkrI	GCNGC	4 cut(s)	118, 805, 838, 873
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
Psp124BI	GAGCTC	1 cut(s)	70
Psp6I	CCWGG	4 cut(s)	127, 703, 814, 829
PspFI	CCCAGC	1 cut(s)	769
PspGI	CCWGG	4 cut(s)	127, 703, 814, 829
PspN4I	GGNNCC	2 cut(s)	807, 828
PspPI	GGNCC	2 cut(s)	584, 707
PstI	CTGCAG	1 cut(s)	121
PstNI	CAGNNNCTG	1 cut(s)	815
RsaI	GTAC	3 cut(s)	404, 863, 877
RsaNI	GTAC	3 cut(s)	403, 862, 876
RseI	CAYNNNNRTG	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	4 cut(s)	117, 804, 837, 872
Sau3AI	GATC	3 cut(s)	236, 331, 527
Sau96I	GGNCC	2 cut(s)	584, 707
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	4 cut(s)	129, 705, 816, 831
SduI	GDGCHC	2 cut(s)	70, 375
SfcI	CTRYAG	1 cut(s)	117
SinI	GGWCC	2 cut(s)	584, 707
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	693
SmoI	CTYRAG	1 cut(s)	693
SpeI	ACTAGT	1 cut(s)	548
Sse9I	AATT	1 cut(s)	502
SsiI	CCGC	4 cut(s)	296, 729, 803, 872
SspMI	CTAG	3 cut(s)	71, 186, 549
SstI	GAGCTC	1 cut(s)	70
StyD4I	CCNGG	4 cut(s)	127, 703, 814, 829
TaaI	ACNGT	4 cut(s)	7, 102, 290, 641
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	239
TasI	AATT	1 cut(s)	502
TauI	GCSGC	2 cut(s)	806, 874
TfiI	GAWTC	2 cut(s)	89, 194
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	3 cut(s)	598, 765, 828
TseI	GCWGC	2 cut(s)	116, 836
TspDTI	ATGAA	6 cut(s)	102, 273, 481, 524, 788, 857
TspRI	CASTG	3 cut(s)	598, 765, 828
Van91I	CCANNNNNTGG	3 cut(s)	593, 749, 815
VpaK11BI	GGWCC	2 cut(s)	584, 707
XapI	RAATTY	1 cut(s)	502
XspI	CTAG	3 cut(s)	71, 186, 549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.