pycom16g00150
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0013465
Physical Location & Seq
Forward (+)
82591 .. 85453
2863 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g00150.2

Sequence Viewer

Length: 876 bp
ATGACTGTGGAGGAAGCAGGCTGTAGCTCCTTGTGGACTCGAGAGCAGGATAAGGCATTCGAGAATGCCCTCGCAATTTATCCTGAGGATTCTTCAGATCGGTGGGAGAAAATTGCAGCTGATGTACAAGGGAAAACCCTAGAGGAGATTAGACATCATTATGACCTCTTACTTGAGGATATATCCCAGATCGAAGCTGGTGTTGTGCCTCTGCCTTGCTACAATTCTTCTTCAGAGGGTTCAACTAGCCACGCCAGTGATGAAGGAACCAATAAGAAAGGGGGACATTCTGGAAACTATAGCAATGAATCTAATCATGGAAGTAAGGCTTCAAGGGCAGATCAGGAACGCCGAAAGGGAATTGCTTGGACAGAGGATGAACACAGGCTATTTCTTCTTGGTTTGGAAAAATATGGGAAAGGCGATTGGCGAAGTATATCCCGGAACTTTGTGGTAACAAGAACCCCTACGCAAGTGGCAAGCCATGCACAAAAGTACTTCATACGCTTGAATTCAATGAACAAGGACAGGAGGCGATCAAGCATTCATGACATAACCAGTGTCAACAATGGAGAAATTTCGGCAGCTCAAGGGCCAATCACTGGTCAAGCAAATGGTGCTGCAGTAGGTTCCTCTGGTAAGTCCACCAAACAATCTCCTGCTGGGGCCCCAGGTGTTGGAATGTACGGCAGTGCACCGAGTATAGGGCAACCAATTGGAGGACCCCTTGTCTCAGCTGTTGGCACACCTGTGAATCTCCCTGCTCCCCCGCACATGGCATATGGTGTGAGCGCCCCAGTACCTGGAGTTGTTCCTGGTGCACCAATGAACATGGTTCCAATGACATATCCAATGCCTCACAGTTCGCATAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

292

Amino Acids

31.11

Weight (kDa)

6.6

Isoelectric Point (pI)

52.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013465)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08520
fragaria_vesca FvH4_4g37210 FvH4_4g37210
malus_domestica MD00G1126800.v1.1 MD13G1002700.v1.1
prunus_persica Prupe.1G349700_v2.0.a1
pyrus_communis pycom13g00230 pycom16g00150
rosa_chinensis RchiOBHm_Chr4g0446981
rosa_laevigata RLG00000005614
rosa_multiflora Rmu_sc0001753.1_g000003
rosa_roxburghii Rroxscaffold_5G00387320
rosa_rugosa Rorug04G0376800
rosa_samantha Rh4AG438400 Rh4BG447400 Rh4CG464500 Rh4DG446000
rosa_wichuraiana Rw4G037490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 602, 677, 803
AciI CCGC 1 cut(s) 770
AcsI RAATTY 2 cut(s) 511, 576
AcuI CTGAAG 2 cut(s) 78, 216
AfaI GTAC 4 cut(s) 126, 497, 686, 801
AfiI CCNNNNNNNGG 6 cut(s) 602, 677, 704, 719, 775, 803
AgsI TTSAA 4 cut(s) 243, 333, 511, 516
AhdI GACNNNNNGTC 1 cut(s) 728
AjnI CCWGG 3 cut(s) 670, 802, 814
AleI CACNNNNGTG 2 cut(s) 255, 749
AluBI AGCT 5 cut(s) 27, 119, 197, 587, 737
AluI AGCT 5 cut(s) 27, 119, 197, 587, 737
Alw21I GWGCWC 2 cut(s) 697, 823
Alw26I GTCTC 1 cut(s) 736
Alw44I GTGCAC 2 cut(s) 693, 819
AlwNI CAGNNNCTG 1 cut(s) 803
Ama87I CYCGRG 1 cut(s) 39
AoxI GGCC 2 cut(s) 593, 666
ApaI GGGCCC 1 cut(s) 670
ApaLI GTGCAC 2 cut(s) 693, 819
ApeKI GCWGC 3 cut(s) 116, 584, 620
ApoI RAATTY 2 cut(s) 511, 576
AspLEI GCGC 1 cut(s) 794
AspS9I GGNCC 4 cut(s) 593, 666, 667, 722
AsuC2I CCSGG 1 cut(s) 442
AvaI CYCGRG 1 cut(s) 39
AvaII GGWCC 1 cut(s) 722
AxyI CCTNAGG 1 cut(s) 84
BaeGI GKGCMC 3 cut(s) 670, 697, 823
BanII GRGCYC 1 cut(s) 670
Bbv12I GWGCWC 2 cut(s) 697, 823
BbvI GCAGC 3 cut(s) 128, 596, 607
BceAI ACGGC 1 cut(s) 703
BciT130I CCWGG 3 cut(s) 672, 804, 816
BcnI CCSGG 1 cut(s) 442
BcoDI GTCTC 1 cut(s) 736
BfaI CTAG 2 cut(s) 140, 246
BfmI CTRYAG 3 cut(s) 22, 298, 621
BfoI RGCGCY 1 cut(s) 795
BisI GCNGC 3 cut(s) 117, 585, 621
BlsI GCNGC 3 cut(s) 118, 586, 622
BmcAI AGTACT 1 cut(s) 497
Bme1390I CCNGG 4 cut(s) 442, 672, 804, 816
Bme18I GGWCC 1 cut(s) 722
BmeRI GACNNNNNGTC 1 cut(s) 728
BmeT110I CYCGRG 1 cut(s) 39
BmgT120I GGNCC 4 cut(s) 593, 666, 667, 722
BmiI GGNNCC 7 cut(s) 268, 631, 667, 668, 669, 724, 837
BmrFI CCNGG 4 cut(s) 442, 672, 804, 816
BmrI ACTGGG 1 cut(s) 791
BmuI ACTGGG 1 cut(s) 791
BpmI CTGGAG 1 cut(s) 825
BpuEI CTTGAG 2 cut(s) 194, 573
BpuMI CCSGG 1 cut(s) 442
BsaJI CCNNGG 1 cut(s) 670
Bsc4I CCNNNNNNNGG 6 cut(s) 602, 677, 704, 719, 775, 803
Bse1I ACTGG 4 cut(s) 255, 558, 607, 797
Bse21I CCTNAGG 1 cut(s) 84
Bse3DI GCAATG 1 cut(s) 310
BseBI CCWGG 3 cut(s) 672, 804, 816
BseDI CCNNGG 1 cut(s) 670
BseGI GGATG 1 cut(s) 382
BseLI CCNNNNNNNGG 6 cut(s) 602, 677, 704, 719, 775, 803
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 2 cut(s) 75, 747
BseNI ACTGG 4 cut(s) 255, 558, 607, 797
BseRI GAGGAG 1 cut(s) 158
BseSI GKGCMC 3 cut(s) 670, 697, 823
BseXI GCAGC 3 cut(s) 128, 596, 607
BseYI CCCAGC 1 cut(s) 662
BshFI GGCC 2 cut(s) 595, 668
BsiHKAI GWGCWC 2 cut(s) 697, 823
BsiHKCI CYCGRG 1 cut(s) 39
BsiSI CCGG 1 cut(s) 442
BslFI GGGAC 1 cut(s) 297
BslI CCNNNNNNNGG 6 cut(s) 602, 677, 704, 719, 775, 803
BsmAI GTCTC 1 cut(s) 736
BsmFI GGGAC 1 cut(s) 297
BsmI GAATGC 3 cut(s) 56, 70, 543
BsnI GGCC 2 cut(s) 595, 668
BsoBI CYCGRG 1 cut(s) 39
Bsp120I GGGCCC 1 cut(s) 666
Bsp1286I GDGCHC 3 cut(s) 670, 697, 823
Bsp1407I TGTACA 1 cut(s) 124
Bsp143I GATC 4 cut(s) 97, 189, 340, 536
BspACI CCGC 1 cut(s) 770
BspANI GGCC 2 cut(s) 595, 668
BspCNI CTCAG 2 cut(s) 76, 746
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 7 cut(s) 268, 631, 667, 668, 669, 724, 837
BspMAI CTGCAG 1 cut(s) 625
BsrDI GCAATG 1 cut(s) 310
BsrGI TGTACA 1 cut(s) 124
BsrI ACTGG 4 cut(s) 255, 558, 607, 797
BssECI CCNNGG 1 cut(s) 670
BssMI GATC 4 cut(s) 97, 189, 340, 536
Bst2UI CCWGG 3 cut(s) 672, 804, 816
Bst4CI ACNGT 2 cut(s) 7, 863
BstAPI GCANNNNNTGC 2 cut(s) 485, 617
BstAUI TGTACA 1 cut(s) 124
BstC8I GCNNGC 2 cut(s) 19, 481
BstDEI CTNAG 2 cut(s) 84, 733
BstF5I GGATG 1 cut(s) 382
BstH2I RGCGCY 1 cut(s) 795
BstHHI GCGC 1 cut(s) 794
BstKTI GATC 4 cut(s) 100, 192, 343, 539
BstMAI GTCTC 1 cut(s) 736
BstMBI GATC 4 cut(s) 97, 189, 340, 536
BstMWI GCNNNNNNNGC 3 cut(s) 335, 485, 617
BstNI CCWGG 3 cut(s) 672, 804, 816
BstSCI CCNGG 4 cut(s) 440, 670, 802, 814
BstSFI CTRYAG 3 cut(s) 22, 298, 621
BstSLI GKGCMC 3 cut(s) 670, 697, 823
BstV1I GCAGC 3 cut(s) 128, 596, 607
Bsu36I CCTNAGG 1 cut(s) 84
BsuRI GGCC 2 cut(s) 595, 668
BtsCI GGATG 1 cut(s) 382
BtsI GCAGTG 1 cut(s) 697
BtsIMutI CAGTG 4 cut(s) 262, 565, 600, 697
Cac8I GCNNGC 2 cut(s) 19, 481
CaiI CAGNNNCTG 1 cut(s) 803
CciI TCATGA 1 cut(s) 547
CfoI GCGC 1 cut(s) 794
Cfr13I GGNCC 4 cut(s) 593, 666, 667, 722
Csp6I GTAC 4 cut(s) 125, 496, 685, 800
CviAII CATG 5 cut(s) 317, 485, 548, 775, 832
CviQI GTAC 4 cut(s) 125, 496, 685, 800
DdeI CTNAG 2 cut(s) 84, 733
DpnI GATC 4 cut(s) 99, 191, 342, 538
DpnII GATC 4 cut(s) 97, 189, 340, 536
DriI GACNNNNNGTC 1 cut(s) 728
Eam1105I GACNNNNNGTC 1 cut(s) 728
Eco24I GRGCYC 1 cut(s) 670
Eco47I GGWCC 1 cut(s) 722
Eco57I CTGAAG 2 cut(s) 78, 216
Eco81I CCTNAGG 1 cut(s) 84
Eco88I CYCGRG 1 cut(s) 39
EcoO109I RGGNCCY 3 cut(s) 666, 667, 722
EcoRI GAATTC 1 cut(s) 511
EcoRII CCWGG 3 cut(s) 670, 802, 814
EcoT38I GRGCYC 1 cut(s) 670
FaeI CATG 5 cut(s) 320, 488, 551, 778, 835
FalI AAGNNNNNCTT 2 cut(s) 313, 345
FaqI GGGAC 1 cut(s) 297
FatI CATG 5 cut(s) 316, 484, 547, 774, 831
FauI CCCGC 1 cut(s) 777
FauNDI CATATG 1 cut(s) 781
Fnu4HI GCNGC 3 cut(s) 117, 585, 621
FokI GGATG 1 cut(s) 389
FriOI GRGCYC 1 cut(s) 670
Fsp4HI GCNGC 3 cut(s) 117, 585, 621
FspBI CTAG 2 cut(s) 140, 246
GlaI GCGC 1 cut(s) 793
GluI GCNGC 3 cut(s) 117, 585, 621
GsaI CCCAGC 1 cut(s) 666
GsuI CTGGAG 1 cut(s) 825
HaeII RGCGCY 1 cut(s) 795
HaeIII GGCC 2 cut(s) 595, 668
HapII CCGG 1 cut(s) 442
HhaI GCGC 1 cut(s) 794
Hin1II CATG 5 cut(s) 320, 488, 551, 778, 835
Hin6I GCGC 1 cut(s) 792
HinP1I GCGC 1 cut(s) 792
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HinfI GANTC 4 cut(s) 37, 89, 308, 754
HpaII CCGG 1 cut(s) 442
Hpy166II GTNNAC 5 cut(s) 36, 565, 645, 695, 821
Hpy188I TCNGA 2 cut(s) 97, 235
Hpy188III TCNNGA 6 cut(s) 41, 61, 83, 291, 344, 548
Hpy8I GTNNAC 5 cut(s) 36, 565, 645, 695, 821
HpyAV CCTTC 1 cut(s) 257
HpyCH4III ACNGT 2 cut(s) 7, 863
HpyCH4V TGCA 5 cut(s) 116, 488, 623, 695, 821
HpyF10VI GCNNNNNNNGC 3 cut(s) 335, 485, 617
HpyF3I CTNAG 2 cut(s) 84, 733
Hsp92II CATG 5 cut(s) 320, 488, 551, 778, 835
HspAI GCGC 1 cut(s) 792
Kzo9I GATC 4 cut(s) 97, 189, 340, 536
LmnI GCTCC 2 cut(s) 32, 769
Lsp1109I GCAGC 3 cut(s) 128, 596, 607
MaeI CTAG 2 cut(s) 140, 246
MaeIII GTNAC 1 cut(s) 454
MalI GATC 4 cut(s) 99, 191, 342, 538
MboI GATC 4 cut(s) 97, 189, 340, 536
MboII GAAGA 4 cut(s) 84, 219, 222, 386
MfeI CAATTG 1 cut(s) 714
MhlI GDGCHC 3 cut(s) 670, 697, 823
MluCI AATT 7 cut(s) 75, 111, 223, 360, 511, 576, 714
MlyI GAGTC 1 cut(s) 31
MmeI TCCRAC 1 cut(s) 658
MslI CAYNNNNRTG 3 cut(s) 159, 255, 749
MspA1I CMGCKG 2 cut(s) 119, 737
MspI CCGG 1 cut(s) 442
MspR9I CCNGG 4 cut(s) 442, 672, 804, 816
MunI CAATTG 1 cut(s) 714
Mva1269I GAATGC 3 cut(s) 56, 70, 543
MvaI CCWGG 3 cut(s) 672, 804, 816
MwoI GCNNNNNNNGC 3 cut(s) 335, 485, 617
NciI CCSGG 1 cut(s) 442
NdeI CATATG 1 cut(s) 781
NdeII GATC 4 cut(s) 97, 189, 340, 536
NlaIII CATG 5 cut(s) 320, 488, 551, 778, 835
NlaIV GGNNCC 7 cut(s) 268, 631, 667, 668, 669, 724, 837
OliI CACNNNNGTG 2 cut(s) 255, 749
PaeR7I CTCGAG 1 cut(s) 39
PagI TCATGA 1 cut(s) 547
PctI GAATGC 3 cut(s) 56, 70, 543
PfeI GAWTC 3 cut(s) 89, 308, 754
PflMI CCANNNNNTGG 3 cut(s) 602, 677, 803
PfoI TCCNGGA 1 cut(s) 440
PkrI GCNGC 3 cut(s) 118, 586, 622
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PpuMI RGGWCCY 1 cut(s) 722
Psp5II RGGWCCY 1 cut(s) 722
Psp6I CCWGG 3 cut(s) 670, 802, 814
PspFI CCCAGC 1 cut(s) 662
PspGI CCWGG 3 cut(s) 670, 802, 814
PspN4I GGNNCC 7 cut(s) 268, 631, 667, 668, 669, 724, 837
PspOMI GGGCCC 1 cut(s) 666
PspPI GGNCC 4 cut(s) 593, 666, 667, 722
PspPPI RGGWCCY 1 cut(s) 722
PstI CTGCAG 1 cut(s) 625
PstNI CAGNNNCTG 1 cut(s) 803
PvuII CAGCTG 2 cut(s) 119, 737
RsaI GTAC 4 cut(s) 126, 497, 686, 801
RsaNI GTAC 4 cut(s) 125, 496, 685, 800
RseI CAYNNNNRTG 3 cut(s) 159, 255, 749
SatI GCNGC 3 cut(s) 117, 585, 621
Sau3AI GATC 4 cut(s) 97, 189, 340, 536
Sau96I GGNCC 4 cut(s) 593, 666, 667, 722
ScaI AGTACT 1 cut(s) 497
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 4 cut(s) 442, 672, 804, 816
SduI GDGCHC 3 cut(s) 670, 697, 823
SfcI CTRYAG 3 cut(s) 22, 298, 621
Sfr274I CTCGAG 1 cut(s) 39
SinI GGWCC 1 cut(s) 722
SlaI CTCGAG 1 cut(s) 39
SmiMI CAYNNNNRTG 3 cut(s) 159, 255, 749
SmlI CTYRAG 3 cut(s) 39, 173, 588
SmoI CTYRAG 3 cut(s) 39, 173, 588
Sse9I AATT 7 cut(s) 75, 111, 223, 360, 511, 576, 714
SsiI CCGC 1 cut(s) 770
SspMI CTAG 2 cut(s) 140, 246
StyD4I CCNGG 4 cut(s) 440, 670, 802, 814
TaaI ACNGT 2 cut(s) 7, 863
TaqI TCGA 3 cut(s) 40, 60, 192
TasI AATT 7 cut(s) 75, 111, 223, 360, 511, 576, 714
TatI WGTACW 2 cut(s) 124, 495
TfiI GAWTC 3 cut(s) 89, 308, 754
TscAI CASTG 4 cut(s) 262, 565, 607, 697
TseI GCWGC 3 cut(s) 116, 584, 620
TspDTI ATGAA 7 cut(s) 276, 321, 393, 490, 533, 536, 842
TspRI CASTG 4 cut(s) 262, 565, 607, 697
Van91I CCANNNNNTGG 3 cut(s) 602, 677, 803
VneI GTGCAC 2 cut(s) 693, 819
VpaK11BI GGWCC 1 cut(s) 722
XapI RAATTY 2 cut(s) 511, 576
XcmI CCANNNNNNNNNTGG 1 cut(s) 194
XhoI CTCGAG 1 cut(s) 39
XspI CTAG 2 cut(s) 140, 246
ZrmI AGTACT 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.